SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000131435
Gene: PDLIM4 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:132257696-132273454 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104600903 chr5:132222226-132280677 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 903 28 1600 208 16 154 1553 P4HA2,PDLIM4,SLC22A4,P4HA2-AS1,MIR6830
SE_02_042300081 chr5:132225081-132274525 Sample_02_0423 Skin A375 81 10 1372 178 13 146 1478 PDLIM4,P4HA2,SLC22A4
SE_02_044000584 chr5:132234113-132279123 Sample_02_0440 Bone LM7 584 15 1236 165 11 107 1225 PDLIM4,SLC22A4,P4HA2,P4HA2-AS1,MIR6830
SE_02_042800121 chr5:132237837-132274910 Sample_02_0428 Kidney 12364284_VHL- 121 6 1019 137 10 104 1162 PDLIM4,SLC22A4,P4HA2
SE_02_043000183 chr5:132237877-132274592 Sample_02_0430 Kidney 12364284 183 12 1007 134 10 104 1162 PDLIM4,SLC22A4,P4HA2
SE_02_035600204 chr5:132242655-132275196 Sample_02_0356 Colon Sw480 204 3 885 117 7 101 1162 PDLIM4,SLC22A4,P4HA2
SE_02_050300172 chr5:132243360-132274803 Sample_02_0503 Esophagus KYSE140_1 172 9 856 111 6 101 1162 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_000800193 chr5:132243409-132271242 Sample_02_0008 Kidney 786-O_empty_vector 193 12 733 92 6 101 690 PDLIM4,SLC22A4,P4HA2
SE_02_006800063 chr5:132243453-132271064 Sample_02_0068 Skin A375_DMSO 63 4 726 92 6 101 653 PDLIM4,SLC22A4,P4HA2
SE_02_018000198 chr5:132243564-132270743 Sample_02_0180 melanoma CJM 198 4 718 92 6 101 574 PDLIM4,SLC22A4,P4HA2
SE_02_152100511 chr5:132243825-132270015 Sample_02_1521 Skin A375 DMSO 511 6 688 90 6 101 573 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_085500263 chr5:132249973-132268521 Sample_02_0855 Glioblastoma Glioblastoma neurosphere cell_HF-2927 263 3 485 62 4 101 472 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_008600872 chr5:132250182-132269853 Sample_01_0086 Thoracic aorta thoracic-aorta 872 2 511 66 4 101 461 PDLIM4,SLC22A4,P4HA2
SE_02_126300587 chr5:132250674-132269370 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 587 5 491 63 4 101 415 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_009300792 chr5:132250745-132269964 Sample_01_0093 Aorta ascending aorta 792 5 503 64 4 100 408 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_085600320 chr5:132250747-132270359 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 320 6 514 69 4 100 407 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126500748 chr5:132250776-132267823 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 748 3 444 59 4 99 403 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_078800283 chr5:132250786-132270550 Sample_02_0788 Brain 3565 283 4 523 69 4 99 403 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_026700226 chr5:132250797-132273072 Sample_02_0267 Kidney 786-O 226 7 611 80 3 99 927 PDLIM4,SLC22A4,P4HA2
SE_02_059400797 chr5:132250836-132270879 Sample_02_0594 iPSC-derived neural progenitors 797 3 529 68 3 99 435 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_093800270 chr5:132250845-132269768 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 270 3 495 63 3 99 395 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_041900924 chr5:132250846-132266312 Sample_02_0419 Pectoralis major muscle LHCN-M2_nodox 924 7 406 54 3 99 313 PDLIM4,SLC22A4,P4HA2
SE_02_126800388 chr5:132250869-132266392 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 388 4 406 53 3 99 318 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_025000135 chr5:132250870-132271363 Sample_02_0250 Brain tumormodel3691 135 4 544 68 3 99 537 PDLIM4,SLC22A4,P4HA2
SE_02_126400879 chr5:132250874-132266953 Sample_02_1264 Bone Im-GCT-4072_G34W KO 879 3 419 55 3 99 389 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126700312 chr5:132250893-132268414 Sample_02_1267 Bone Im-GCT-4072_G34W 312 5 457 58 3 99 387 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_118800492 chr5:132250902-132268615 Sample_02_1188 Brain GBM18 492 6 460 59 3 99 387 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_119301297 chr5:132250922-132273178 Sample_02_1193 Brain GBM27 1297 7 611 79 2 99 936 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_001200237 chr5:132250932-132271048 Sample_02_0012 Kidney 786-O_non-targeting 237 7 529 66 2 99 465 PDLIM4,SLC22A4,P4HA2
SE_02_093600572 chr5:132250933-132269824 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 572 5 493 61 2 99 385 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_011500678 chr5:132250952-132266401 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 678 4 404 52 2 99 313 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_113900906 chr5:132250972-132266833 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 906 3 412 53 2 99 381 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_046700036 chr5:132250973-132270638 Sample_02_0467 Kidney 786-O_control 36 12 517 66 2 99 381 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_016500527 chr5:132250974-132267362 Sample_02_0165 Lung H2087_LCC2 527 2 425 55 2 99 381 PDLIM4,SLC22A4,P4HA2
SE_02_119100594 chr5:132251029-132269356 Sample_02_1191 Brain GBM25 594 7 479 60 2 99 370 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126900364 chr5:132251036-132268208 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 364 4 447 56 2 99 370 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_085700449 chr5:132251047-132274997 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 449 4 659 86 2 99 958 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_081100730 chr5:132251065-132267017 Sample_02_0811 Thyroid BCPAP 730 7 415 54 2 99 368 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_113801109 chr5:132251125-132269089 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1109 5 470 59 2 98 359 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126000485 chr5:132251142-132266621 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 485 6 404 53 2 98 337 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_086701156 chr5:132251148-132268073 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 1156 9 440 56 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_046900231 chr5:132251156-132268829 Sample_02_0469 Kidney 786-O PBRM1 shRNA#2 231 10 457 58 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_079400202 chr5:132251157-132268755 Sample_02_0794 Brain 1552 202 6 454 58 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_118200087 chr5:132251170-132270854 Sample_02_1182 Brain GBM11 87 10 519 66 2 98 393 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_142700158 chr5:132251244-132269882 Sample_02_1427 Shoulder fibroblast_343 158 4 487 61 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_118700361 chr5:132251252-132269061 Sample_02_1187 Brain GBM16 361 9 467 59 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_120000098 chr5:132251252-132270844 Sample_02_1200 Brain GBM36 98 3 516 66 2 98 385 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_142600172 chr5:132251277-132269841 Sample_02_1426 Shoulder fibroblast_341 172 5 485 61 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_093700885 chr5:132251348-132269446 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 885 4 476 61 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_142800451 chr5:132251357-132269941 Sample_02_1428 Shoulder fibroblast_316 451 4 484 61 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_118600419 chr5:132251361-132269850 Sample_02_1186 Brain GBM15 419 5 482 61 2 98 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_114500815 chr5:132251383-132269396 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 815 15 470 59 2 97 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_119800409 chr5:132251487-132269955 Sample_02_1198 Brain GBM34 409 12 477 59 2 89 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_00_004300655 chr5:132252289-132270973 Sample_00_0043 Stomach stomach_96d 655 4 486 62 2 84 420 PDLIM4,SLC22A4,P4HA2
SE_02_144500667 chr5:132252328-132272852 Sample_02_1445 Adipose SW872_TAZ4SA 667 3 558 74 2 84 841 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_00_003100629 chr5:132252453-132268998 Sample_00_0031 Placenta placenta 629 3 430 55 2 83 357 PDLIM4,SLC22A4,P4HA2
SE_02_051500184 chr5:132252511-132274804 Sample_02_0515 Esophagus KYSE140 184 8 612 80 2 83 946 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_010701384 chr5:132252635-132267593 Sample_01_0107 Esophagus esophagus squamous epithelium 1384 5 384 51 2 83 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_00_001101105 chr5:132252673-132266736 Sample_00_0011 Esophagus esophagus 1105 3 357 47 2 83 354 PDLIM4,SLC22A4,P4HA2
SE_01_007200424 chr5:132252687-132271228 Sample_01_0072 Breast epithelium breast-epithelium 424 2 482 60 2 83 474 PDLIM4,SLC22A4,P4HA2
SE_02_125500139 chr5:132252689-132278725 Sample_02_1255 Bladder Bladder tumor Luminal2 139 11 697 93 2 83 1009 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_039600999 chr5:132252850-132275212 Sample_02_0396 Skin NHEK-D 999 5 611 80 2 83 946 PDLIM4,SLC22A4,P4HA2
SE_02_120100268 chr5:132253093-132269844 Sample_02_1201 Brain GBM37 268 3 435 55 2 83 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_053301232 chr5:132253357-132268567 Sample_02_0533 Blood vessel Circle of Willis_54y 1232 8 393 52 2 79 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_007500762 chr5:132253372-132270113 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 762 3 436 58 2 79 357 PDLIM4,SLC22A4,P4HA2
SE_02_155300696 chr5:132253524-132273307 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 696 12 544 72 2 75 921 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_008300520 chr5:132253877-132270177 Sample_01_0083 Sigmoid colon sigmoid-colon 520 2 418 57 2 70 357 PDLIM4,SLC22A4,P4HA2
SE_01_006100392 chr5:132253891-132275171 Sample_01_0061 Prostate RWPE1 392 6 580 78 2 70 946 PDLIM4,SLC22A4,P4HA2
SE_02_072500273 chr5:132254084-132265762 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 273 5 299 40 2 70 268 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_007700368 chr5:132254093-132273449 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 368 3 529 71 2 70 928 PDLIM4,SLC22A4,P4HA2
SE_01_007800599 chr5:132254313-132273645 Sample_01_0078 Heart left ventricle heart-left-ventricle 599 3 525 69 2 70 946 PDLIM4,SLC22A4,P4HA2
SE_02_143700613 chr5:132254725-132275100 Sample_02_1437 Liver LSEC-TNF 613 5 557 71 2 70 946 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_044400336 chr5:132255083-132271081 Sample_02_0444 Bone osteosarcoma tumor P10 336 1 411 50 1 68 443 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_008800318 chr5:132255117-132278955 Sample_01_0088 Tibial nerve tibial-nerve 318 4 638 84 1 68 1009 PDLIM4,SLC22A4,P4HA2
SE_01_009100233 chr5:132256247-132273594 Sample_01_0091 Uterus uterus 233 2 465 60 1 63 937 PDLIM4,SLC22A4,P4HA2
SE_01_008900485 chr5:132256374-132279097 Sample_01_0089 Transverse colon transverse-colon 485 3 608 79 1 63 1009 PDLIM4,SLC22A4,P4HA2
SE_02_155900798 chr5:132256529-132266655 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 798 4 250 32 1 62 343 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_007400531 chr5:132256538-132270253 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 531 1 345 44 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_027500459 chr5:132256569-132272516 Sample_02_0275 Retina FW14 459 2 430 55 1 62 773 PDLIM4,SLC22A4,P4HA2
SE_02_010700930 chr5:132256596-132270182 Sample_02_0107 Endometrium EEC16 930 1 338 44 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_156001082 chr5:132256603-132269869 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1082 6 331 40 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_005600520 chr5:132256661-132269746 Sample_02_0056 Mammary gland HMEC 520 4 325 40 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_01_009200448 chr5:132256703-132270287 Sample_01_0092 Vagina vagina 448 1 338 44 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_027400736 chr5:132256704-132269774 Sample_02_0274 Endometriosis hTERT_KD 736 2 325 40 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_026500727 chr5:132256704-132280337 Sample_02_0265 Skeletal muscle 7250-PAX3-FOXO1 727 3 629 84 4 62 1009 PDLIM4,SLC22A4,P4HA2
SE_02_003200571 chr5:132256705-132273536 Sample_02_0032 Pancreas pancreatic-islets-M 571 3 451 59 1 62 934 PDLIM4,SLC22A4,P4HA2
SE_02_030400545 chr5:132256706-132279128 Sample_02_0304 Neuroblastoma N206 545 4 599 79 1 62 1009 PDLIM4,SLC22A4,P4HA2
SE_02_118500174 chr5:132256781-132271897 Sample_02_1185 Brain GBM14 174 1 398 52 1 62 648 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_052100383 chr5:132256804-132269715 Sample_02_0521 Colon SW480 383 6 321 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_118300397 chr5:132256822-132266818 Sample_02_1183 Brain GBM12 397 1 244 31 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_017200673 chr5:132256838-132270874 Sample_02_0172 Lung IMR-90_quiescent 673 1 354 44 1 62 396 PDLIM4,SLC22A4,P4HA2
SE_02_113600460 chr5:132256842-132267990 Sample_02_1136 Bone U2OS-anaphase/telophase 460 5 272 34 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_030101344 chr5:132256857-132270719 Sample_02_0301 Neuroblastoma GIMEN 1344 1 348 44 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_017100415 chr5:132256878-132270905 Sample_02_0171 Lung IMR-90_proliferating 415 2 352 44 1 62 401 PDLIM4,SLC22A4,P4HA2
SE_02_001900451 chr5:132256878-132279004 Sample_02_0019 Embryo Neural crest cells 451 8 587 78 1 62 1009 PDLIM4,SLC22A4,P4HA2
SE_02_061500371 chr5:132256896-132271202 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 371 3 360 44 1 62 472 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_027600453 chr5:132256899-132271444 Sample_02_0276 Retina FW15 453 2 370 46 1 62 523 PDLIM4,SLC22A4,P4HA2
SE_02_037400301 chr5:132256904-132269995 Sample_02_0374 Skeletal muscle RMS209 301 2 324 40 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_01_010900774 chr5:132256913-132278828 Sample_01_0109 Colon transverse colon_54y 774 7 578 78 1 62 1009 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_086900347 chr5:132256932-132274929 Sample_02_0869 Fibroblast VH10_NO_UV 347 9 490 64 1 62 946 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_006600370 chr5:132256945-132266770 Sample_01_0066 Smooth muscle smooth-muscle-cell 370 2 238 31 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_095100331 chr5:132256956-132270572 Sample_02_0951 HMSCs hMSCs 331 5 343 44 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_097900523 chr5:132256969-132270731 Sample_02_0979 Brain JN14-BS1_H3.3K27M 523 5 348 44 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_056901016 chr5:132256974-132271140 Sample_02_0569 Periodontal ligament mesenchymal stem cell 1016 7 356 44 1 62 455 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_114800497 chr5:132256982-132265017 Sample_02_1148 Kidney WT 9-12_control_vehicle 497 5 187 27 1 62 268 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_00_003800471 chr5:132256984-132270793 Sample_00_0038 Spinal cord spinal-cord_108d 471 2 348 44 1 62 375 PDLIM4,SLC22A4,P4HA2
SE_02_117400301 chr5:132256988-132268610 Sample_02_1174 Brain GBM02 301 9 283 36 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_146900211 chr5:132256990-132273232 Sample_02_1469 Umbilical Vein HUVEC 211 4 437 57 1 62 918 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_021100260 chr5:132256993-132284361 Sample_02_0211 Lung MRC-5_NFD_1DPT 260 4 735 92 4 62 1054 PDLIM4,SLC22A4,P4HA2
SE_02_119900280 chr5:132257006-132270042 Sample_02_1199 Brain GBM35 280 3 324 42 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_085800299 chr5:132257031-132270024 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 299 1 323 42 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_095000848 chr5:132257038-132273189 Sample_02_0950 Umbilical vein HUVEC_WT 848 6 434 57 1 62 911 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_00_002900632 chr5:132257041-132266203 Sample_00_0029 Ovary ovary 632 4 225 30 1 62 268 PDLIM4,SLC22A4,P4HA2
SE_02_081600846 chr5:132257041-132278839 Sample_02_0816 Ovary Clear cell ovarian cancer 846 6 576 78 1 62 1009 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_147100510 chr5:132257046-132268086 Sample_02_1471 Blood Outgrowth Endothelia BOEC 510 2 271 34 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_020900616 chr5:132257060-132270047 Sample_02_0209 Lung MRC-5_MRC5_1DPT 616 2 323 42 1 62 357 PDLIM4,SLC22A4,P4HA2
SE_02_142500209 chr5:132257065-132268968 Sample_02_1425 Shoulder fibroblast_384 209 8 296 37 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064300570 chr5:132257067-132270441 Sample_02_0643 Mammary gland MDA-MB-436 570 10 335 44 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_119400584 chr5:132257084-132269196 Sample_02_1194 Brain GBM28 584 4 302 37 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_072701187 chr5:132257086-132270303 Sample_02_0727 Fetal lung IMR90_Etoposide 1187 3 328 43 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_044800344 chr5:132257092-132269948 Sample_02_0448 Bone MNNG 344 6 319 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064200487 chr5:132257100-132270594 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 487 9 341 44 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_079500075 chr5:132257101-132269915 Sample_02_0795 Brain 1953 75 6 318 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_105401005 chr5:132257103-132267046 Sample_02_1054 Esophagus SKGT4 1005 4 243 32 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_061300578 chr5:132257129-132268400 Sample_02_0613 Liposarcoma MLPS_T1 578 10 277 35 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_130901067 chr5:132257136-132266446 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 1067 2 229 30 1 62 303 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_080000217 chr5:132257136-132269254 Sample_02_0800 Brain 3679 217 5 303 38 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064600773 chr5:132257139-132265828 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 773 2 211 27 1 62 268 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_088100904 chr5:132257141-132269786 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 904 4 314 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_147200087 chr5:132257146-132270258 Sample_02_1472 Fetal lung IMR-90 87 3 327 43 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_135500993 chr5:132257150-132269535 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 993 3 311 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_057000557 chr5:132257151-132269881 Sample_02_0570 Brain LN229_10_mM_glucose 557 7 318 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_045200405 chr5:132257153-132271066 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 405 3 352 44 1 62 437 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_079900246 chr5:132257160-132268115 Sample_02_0799 Brain MESMN1 246 6 271 34 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064801035 chr5:132257163-132266371 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1035 4 226 30 1 62 285 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064501159 chr5:132257172-132269594 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1159 5 312 39 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_132500243 chr5:132257181-132268758 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 243 4 282 35 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126100807 chr5:132257182-132266394 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 807 4 225 29 1 62 286 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_144400273 chr5:132257197-132270254 Sample_02_1444 Adipose SW872_Empty Vector 273 4 323 41 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137500193 chr5:132257198-132269924 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 193 6 315 37 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_145400379 chr5:132257207-132269841 Sample_02_1454 Arter pulmonary arterial smooth muscle cells_PAH1_sialdh1a3 379 4 313 37 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_145200418 chr5:132257215-132269827 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 418 6 312 37 1 62 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064700638 chr5:132257233-132269490 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 638 4 305 37 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_064400544 chr5:132257240-132266328 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 544 4 220 28 1 61 275 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_065000623 chr5:132257244-132269382 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 623 4 301 36 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_153200483 chr5:132257256-132266482 Sample_02_1532 Mammary gland MCF10A 483 4 224 29 1 61 310 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_145500572 chr5:132257256-132269919 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 572 5 313 37 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_065200657 chr5:132257269-132266402 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 657 4 221 28 1 61 288 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_087901067 chr5:132257277-132270398 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1067 5 325 42 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_121100476 chr5:132257278-132268817 Sample_02_1211 Brain GBM21 476 7 279 34 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_130800907 chr5:132257295-132266552 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 907 2 225 29 1 61 321 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_144700369 chr5:132257296-132270398 Sample_02_1447 Adipose SW872_CAMTA1 369 1 325 42 1 61 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_145100332 chr5:132257356-132270005 Sample_02_1451 Arter pulmonary arterial smooth muscle cells_PAH1_sictrl 332 4 314 38 1 57 357 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_088200804 chr5:132257369-132269934 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 804 3 313 37 1 57 357 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_064900683 chr5:132257371-132266247 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 683 4 219 28 1 57 268 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_154100923 chr5:132257406-132275220 Sample_02_1541 Nasopharyngeal HNE1 923 10 481 62 1 57 946 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_001900517 chr5:132257455-132270010 Sample_01_0019 Brain and spinal cord astrocyte 517 3 315 39 1 57 357 PDLIM4,SLC22A4,P4HA2
SE_02_144900568 chr5:132257587-132270905 Sample_02_1449 Adipose SW872_YAP_TFE3 568 3 334 42 1 57 352 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_004500816 chr5:132257611-132267365 Sample_01_0045 Mammary gland mammary-epithelial-cell 816 2 236 31 1 57 298 PDLIM4,SLC22A4,P4HA2
SE_02_132700366 chr5:132257624-132260527 Sample_02_1327 Hindbrain Hindbrain derived neural stem cells_NS13_H3.3K27M_WT 366 2 72 8 1 44 103 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_01_005601049 chr5:132257625-132267197 Sample_01_0056 Bone osteoblast 1049 2 230 31 1 57 290 PDLIM4,SLC22A4,P4HA2
SE_01_002900277 chr5:132257634-132270092 Sample_01_0029 Lung fibroblast-of-lung 277 3 308 40 1 56 289 PDLIM4,SLC22A4,P4HA2
SE_02_094200120 chr5:132257638-132269186 Sample_02_0942 Brain LN229 120 4 287 35 1 56 287 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_021000792 chr5:132257641-132270140 Sample_02_0210 Lung MRC-5_N_1DPT 792 4 310 41 1 56 286 PDLIM4,SLC22A4,P4HA2
SE_02_007400440 chr5:132257651-132270566 Sample_02_0074 Other 90-8TL_PDJQ 440 4 325 42 1 56 283 PDLIM4,SLC22A4,P4HA2
SE_01_011700115 chr5:132257652-132270235 Sample_01_0117 Lung fibroblast of lung 115 6 311 41 1 56 283 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137600321 chr5:132257652-132270363 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 321 6 315 42 1 56 283 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137700274 chr5:132257654-132269929 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 274 7 304 37 1 56 283 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137200526 chr5:132257660-132266627 Sample_02_1372 Pancreas PSN1-untreated 526 6 217 29 1 56 261 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137400322 chr5:132257661-132269902 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 322 8 303 37 1 56 279 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_138000434 chr5:132257664-132267112 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 434 10 229 30 1 56 278 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_152200993 chr5:132257665-132269817 Sample_02_1522 Skin A375 RTKi 993 3 300 37 1 56 278 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_114900366 chr5:132257669-132266643 Sample_02_1149 Kidney WT 9-12_control_Nrf2_SFN 366 4 217 29 1 56 263 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_083901280 chr5:132257669-132269977 Sample_02_0839 Embryo hNPCs_K755R/+ 1280 7 305 37 1 56 278 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_079300493 chr5:132257670-132261516 Sample_02_0793 Brain MES20 493 2 98 11 1 56 91 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_018100278 chr5:132257671-132270087 Sample_02_0181 melanoma COLO679 278 2 308 40 1 56 278 PDLIM4,SLC22A4,P4HA2
SE_02_043800249 chr5:132257671-132271419 Sample_02_0438 Bone HOS 249 5 351 44 1 56 438 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_137900204 chr5:132257673-132269948 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 204 10 304 36 1 56 278 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_083101116 chr5:132257683-132267196 Sample_02_0831 Umblical vein HUVECs_TNF0min 1116 7 229 30 1 56 277 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_037500284 chr5:132257684-132266936 Sample_02_0375 Skeletal muscle RMS216 284 2 223 29 1 56 277 PDLIM4,SLC22A4,P4HA2
SE_02_017500448 chr5:132257685-132266761 Sample_02_0175 Lung IMR-90_Etoposide 448 6 219 28 1 56 277 PDLIM4,SLC22A4,P4HA2
SE_02_110400617 chr5:132257685-132271521 Sample_02_1104 Brain NB-69 617 5 351 43 1 56 459 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_107800252 chr5:132257687-132270843 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 252 7 331 41 1 56 305 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_083200430 chr5:132257689-132269356 Sample_02_0832 Umblical vein HUVECs_TNF30min 430 5 290 35 1 56 275 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_074100821 chr5:132257693-132260753 Sample_02_0741 Muscle RH30 821 1 81 9 1 45 87 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_088300710 chr5:132257694-132269704 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 710 2 297 36 1 56 273 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_137801116 chr5:132257696-132269989 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1116 12 304 37 1 56 273 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_087801300 chr5:132257697-132269689 Sample_02_0878 Ovary SVOG3e cells_noDox_control 1300 5 297 36 1 56 273 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_088000880 chr5:132257697-132269721 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 880 3 297 36 1 56 273 PDLIM4,MIR6830,P4HA2,SLC22A4,SLC22A5
SE_02_057100688 chr5:132257702-132269508 Sample_02_0571 Brain LN229_1mM_glucose_5mM_acetate 688 10 295 36 1 56 271 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_040600228 chr5:132257708-132268953 Sample_02_0406 Mammary gland ZR-75-30_parental 228 6 278 34 1 56 271 PDLIM4,SLC22A4,P4HA2
SE_02_040500083 chr5:132257710-132270586 Sample_02_0405 Mammary gland ZR-75-30_KO 83 3 325 41 1 56 271 PDLIM4,SLC22A4,P4HA2
SE_02_151900092 chr5:132257722-132273194 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 92 13 418 54 1 56 824 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_152000071 chr5:132257724-132273176 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 71 11 415 54 1 55 820 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_047400547 chr5:132257730-132269913 Sample_02_0474 Fibroblast umbilical cord Fibroblast 547 3 301 36 1 53 267 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_080100325 chr5:132257733-132264610 Sample_02_0801 Brain 2235 325 4 162 22 1 53 178 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_151800384 chr5:132257762-132273192 Sample_02_1518 Umbilical vein HUVEC_Scr 384 12 417 54 1 53 809 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_097200742 chr5:132257834-132270556 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 742 5 323 41 1 46 232 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_096100360 chr5:132258351-132270227 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 360 7 300 40 1 41 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_126200912 chr5:132258671-132269947 Sample_02_1262 Bone Im-GCT-3504_G34W 912 6 283 34 1 38 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_114100180 chr5:132259112-132268093 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 180 8 226 28 1 28 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_018400908 chr5:132259178-132273427 Sample_02_0184 Skin SKMEL30 908 5 393 52 1 28 757 PDLIM4,SLC22A4,P4HA2
SE_02_084900310 chr5:132259421-132269749 Sample_02_0849 iPSCs iPSC_CBP-30 310 5 260 33 1 20 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_084800172 chr5:132259446-132269718 Sample_02_0848 iPSCs iPSC_DMSO 172 4 260 33 1 20 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_027000586 chr5:132259465-132270387 Sample_02_0270 Kidney PCS-400 586 7 278 38 1 19 187 PDLIM4,SLC22A4,P4HA2
SE_02_062000814 chr5:132259585-132267520 Sample_02_0620 Aortic Aortic Endothelial Cells_DF 814 5 200 28 1 18 187 PDLIM4,MIR6830,P4HA2,SLC22A4
SE_02_001000657 chr5:132259926-132269063 Sample_02_0010 Kidney A-498_emptyvector 657 4 232 30 1 17 187 PDLIM4,SLC22A4,P4HA2
SE_02_076201212 chr5:132261006-132274377 Sample_02_0762 Podocyte podocyte_CTL 1212 1 365 47 0 3 776 PDLIM4,MIR6830,P4HA2,SLC22A4
Genomic distribution of SEs associated with PDLIM4
Genome Browser

The strength of the tissue affected by the gene

Expression of PDLIM4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)