SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001000657
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr5:132259926-132269063
Size: 9137
Super-enhancer rank 657
Number of SE elements: 4
ChIP density(Case|Control): 40743.7104|570.1488
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PDLIM4 ;
ROSE Overlap PDLIM4 ;
ROSE Proximal SLC22A4 ; P4HA2 ; PDLIM4 ;
ROSE Closest PDLIM4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA P4HA2 ; SLC22A4 ; PDLIM4 ; MIR6830 ; P4HA2-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001000657 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers