SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000145911
Gene: N4BP3 Gene type: protein_coding
Strand: + External links:
Genomic region: chr5:178113532-178126081 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104300613 chr5:178050814-178127474 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 613 29 2136 155 5 171 1710 N4BP3,RMND5B,NHP2,FAM153C
SE_02_104700758 chr5:178070570-178127625 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 758 20 1626 112 5 175 1710 N4BP3,RMND5B,NHP2
SE_02_157800014 chr5:178074972-178151465 Sample_02_1578 Mammary gland MCF7_DAC+455 14 20 2232 168 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1,HNRNPAB
SE_02_009600029 chr5:178075160-178129840 Sample_02_0096 Mammary gland ZR-75-1_1 29 13 1575 104 5 183 1710 N4BP3,NHP2,RMND5B
SE_02_115100126 chr5:178075194-178087200 Sample_02_1151 Mammary gland MCF-7_UNTR 126 1 378 39 4 0 0 RMND5B,N4BP3
SE_01_004600213 chr5:178075267-178087995 Sample_01_0046 Mammary gland MCF-7 213 1 392 40 4 0 0 N4BP3,RMND5B
SE_02_157500008 chr5:178075355-178132742 Sample_02_1575 Mammary gland MCF7_Mock 8 13 1657 110 5 193 1891 RMND5B,N4BP3,NHP2,HNRNPAB
SE_02_157600010 chr5:178075397-178132749 Sample_02_1576 Mammary gland MCF7_CPI-455 10 22 1657 110 5 193 1891 RMND5B,N4BP3,NHP2,HNRNPAB
SE_02_157700013 chr5:178075465-178132719 Sample_02_1577 Mammary gland MCF7_DAC 13 18 1656 110 5 193 1891 RMND5B,N4BP3,NHP2,HNRNPAB
SE_02_056500007 chr5:178075477-178147026 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 7 29 2058 148 5 224 2568 RMND5B,N4BP3,NHP2,GMCL1P1
SE_02_011500049 chr5:178075522-178127867 Sample_02_0115 Mammary gland MCF-7 49 6 1509 99 5 175 1710 N4BP3,NHP2,RMND5B,GCL1P1,HNRNPAB,RND5B
SE_02_125300064 chr5:178075705-178151490 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 64 24 2213 163 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_062500021 chr5:178075729-178127696 Sample_02_0625 Mammary gland WS8_4OHT 21 15 1490 94 5 175 1710 N4BP3,RMND5B,NHP2
SE_02_085200008 chr5:178075756-178151878 Sample_02_0852 Mammary gland MCF7L-P 8 15 2228 164 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_115900008 chr5:178075756-178151878 Sample_02_1159 Mammary gland MCF7 8 15 2228 164 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1,HNRNPAB
SE_02_107600026 chr5:178075760-178125941 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 26 12 1442 91 5 168 1679 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_040400093 chr5:178075782-178128205 Sample_02_0404 Mammary gland ZR-75-1_2 93 10 1512 96 5 175 1710 N4BP3,NHP2,RMND5B
SE_02_062600012 chr5:178075782-178147266 Sample_02_0626 Mammary gland WS8_E2 12 18 2058 145 5 224 2568 RMND5B,N4BP3,NHP2,GMCL1P1
SE_02_062700014 chr5:178075785-178132748 Sample_02_0627 Mammary gland WS8_VEH 14 12 1645 107 5 193 1891 RMND5B,N4BP3,NHP2
SE_02_062400019 chr5:178075931-178151580 Sample_02_0624 Mammary gland TAMR_VEH 19 19 2207 163 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_056300028 chr5:178075956-178150730 Sample_02_0563 Mammary gland MCF7L-P_0h 28 28 2175 160 6 247 2913 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_062300024 chr5:178076007-178148099 Sample_02_0623 Mammary gland TAMR_E2 24 15 2084 149 6 238 2684 RMND5B,N4BP3,NHP2,GMCL1P1
SE_02_056400013 chr5:178076025-178151674 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 13 27 2209 164 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_115800138 chr5:178076038-178108996 Sample_02_1158 Mammary gland MCF7_siYTHDC1_E2 138 9 938 69 5 14 0 RMND5B,NHP2,N4BP3
SE_02_052700061 chr5:178076078-178129160 Sample_02_0527 Mammary gland MCF7_WT 61 36 1525 98 5 183 1710 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_052600078 chr5:178076089-178125723 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 78 28 1425 91 5 168 1641 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_085000018 chr5:178076094-178132730 Sample_02_0850 Mammary gland MCF7L-P_FOXA1-Dox 18 17 1632 107 5 193 1891 RMND5B,N4BP3,NHP2
SE_02_093000174 chr5:178076408-178131554 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 174 29 1582 100 5 193 1890 RMND5B,N4BP3,NHP2
SE_02_077800028 chr5:178076458-178125886 Sample_02_0778 Mammary gland MCF7_FASR 28 9 1410 89 5 168 1674 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_056800023 chr5:178076488-178146555 Sample_02_0568 Mammary gland MCF7L_E2_4h 23 25 1999 143 5 224 2568 RMND5B,N4BP3,NHP2,GMCL1P1
SE_02_056600025 chr5:178076498-178151452 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 25 26 2177 160 6 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1
SE_02_077700101 chr5:178077172-178091193 Sample_02_0777 Mammary gland MCF7_TAMR 101 2 407 37 4 0 0 RMND5B,N4BP3
SE_02_021800028 chr5:178077499-178125594 Sample_02_0218 Mammary gland MCF-7_PMA 28 19 1378 88 5 168 1623 N4BP3,NHP2,RMND5B
SE_02_012400355 chr5:178080452-178132194 Sample_02_0124 Embryo Embryonic-stem-cells_Naive 355 7 1468 91 2 193 1891 RMND5B,N4BP3,NHP2
SE_02_107700044 chr5:178081334-178132238 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 44 11 1451 89 1 193 1891 RMND5B,N4BP3,NHP2,HNRNPAB
SE_01_010700429 chr5:178081378-178152474 Sample_01_0107 Esophagus esophagus squamous epithelium 429 16 2059 149 2 248 2983 NHP2,RMND5B,N4BP3,GMCL1P1,PROP1,HNRNPAB
SE_02_103600644 chr5:178082707-178145745 Sample_02_1036 Mammary gland HCC70_XY018 644 16 1783 122 1 217 2458 RMND5B,N4BP3,NHP2,GMCL1P1
SE_02_000200067 chr5:178103243-178133728 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 67 4 880 51 0 193 1891 RMND5B,N4BP3,NHP2
SE_02_104801068 chr5:178103645-178127890 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1068 10 703 35 0 175 1710 N4BP3,RMND5B,NHP2
SE_00_001101196 chr5:178104078-178125615 Sample_00_0011 Esophagus esophagus 1196 6 618 29 0 168 1623 N4BP3,NHP2,RMND5B
SE_02_107900104 chr5:178104849-178126383 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 104 7 617 30 0 161 1710 N4BP3,RMND5B,NHP2
SE_02_116100069 chr5:178106797-178129166 Sample_02_1161 Embryo H1_shZNF587 69 6 650 33 0 174 1710 N4BP3,RMND5B,NHP2
SE_02_001900730 chr5:178107646-178125025 Sample_02_0019 Embryo Neural crest cells 730 7 510 26 0 154 1504 N4BP3,NHP2,RMND5B
SE_02_004000391 chr5:178107656-178127871 Sample_02_0040 Embryo PFG 391 5 590 31 0 162 1710 N4BP3,NHP2,RMND5B
SE_02_024600270 chr5:178107683-178126163 Sample_02_0246 Mammary gland MCF-7_estradiol 270 3 536 27 0 155 1695 N4BP3,NHP2,RMND5B
SE_02_055900074 chr5:178107711-178130939 Sample_02_0559 iPSCs FX52 iPSCs dC-T 74 5 679 37 0 171 1734 N4BP3,RMND5B,NHP2
SE_02_101500270 chr5:178107767-178132342 Sample_02_1015 Embryo H9_ Undifferentiated 270 4 725 41 0 180 1891 RMND5B,N4BP3,NHP2
SE_02_003600112 chr5:178107780-178129753 Sample_02_0036 Embryo H7 112 5 646 35 0 170 1710 N4BP3,NHP2,RMND5B
SE_02_157000144 chr5:178108143-178131966 Sample_02_1570 iPSCs EiPSC 144 7 692 37 0 180 1891 RMND5B,N4BP3,NHP2
SE_02_074200063 chr5:178110727-178128601 Sample_02_0742 Embryo ESCs_day0 63 14 528 26 0 164 1710 N4BP3,RMND5B,NHP2
SE_02_037800255 chr5:178112735-178131826 Sample_02_0378 Skeletal muscle SCMC 255 2 575 29 0 177 1891 RMND5B,N4BP3,NHP2
SE_00_001600136 chr5:178112757-178127886 Sample_00_0016 Foreskin iPS-DF-19.11 141 3 460 23 0 159 1710 N4BP3,NHP2,RMND5B
SE_02_156700296 chr5:178112786-178128682 Sample_02_1567 iPSCs CiPSC 296 6 485 24 0 164 1710 N4BP3,RMND5B,NHP2
SE_00_001200112 chr5:178112848-178127862 Sample_00_0012 Embryo H1-hESC 112 3 456 23 0 159 1710 N4BP3,NHP2,RMND5B
SE_00_002600726 chr5:178112853-178122731 Sample_00_0026 Muscle of trunk muscle-of-trunk 726 3 294 10 0 137 961 N4BP3,NHP2,RMND5B
SE_02_115300545 chr5:178112855-178123299 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 545 1 316 11 0 137 1093 N4BP3,RMND5B,NHP2
SE_02_003801300 chr5:178112879-178127814 Sample_02_0038 Embryo DE 1300 2 452 23 0 159 1710 N4BP3,NHP2,RMND5B
SE_02_088500267 chr5:178112930-178125007 Sample_02_0885 Blood NALM6_2 267 1 373 18 0 151 1500 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_115100076 chr5:178112933-178125728 Sample_02_1151 Mammary gland MCF-7_UNTR 76 1 392 18 0 152 1643 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_067500066 chr5:178113007-178129130 Sample_02_0675 Embryo H1 hESC-derived neural progenitor cells_Smad_0hr 66 11 490 25 0 165 1710 N4BP3,RMND5B,NHP2
SE_02_057300243 chr5:178113011-178124622 Sample_02_0573 Blood Nalm6_1 243 2 361 17 0 149 1417 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_075000757 chr5:178113018-178123933 Sample_02_0750 Lymphoma Rec-1_GSI 757 2 337 13 0 141 1231 N4BP3,RMND5B,NHP2
SE_02_067600071 chr5:178113024-178129263 Sample_02_0676 Embryo H1 hESC-derived neural progenitor cells_Smad_3hr 71 9 496 25 0 165 1710 N4BP3,RMND5B,NHP2
SE_02_107800223 chr5:178113038-178125627 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 223 2 390 18 0 150 1623 N4BP3,RMND5B,NHP2
SE_02_083100407 chr5:178113085-178127780 Sample_02_0831 Umblical vein HUVECs_TNF0min 407 12 445 23 0 157 1710 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_146900777 chr5:178113123-178127711 Sample_02_1469 Umbilical Vein HUVEC 777 4 438 20 0 157 1710 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_055800083 chr5:178113577-178129200 Sample_02_0558 iPSCs FX52 iPSCs mock 83 6 472 23 0 156 1634 N4BP3,RMND5B,NHP2
SE_01_009500766 chr5:178113589-178127184 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 766 2 407 18 0 140 1628 N4BP3,RMND5B,NHP2
SE_01_009600290 chr5:178113595-178122832 Sample_01_0096 B-cell lymphoma DOHH2 290 1 277 8 0 125 912 N4BP3,RMND5B,NHP2
SE_02_083200543 chr5:178113598-178127554 Sample_02_0832 Umblical vein HUVECs_TNF30min 543 9 420 19 0 147 1626 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_073900964 chr5:178113646-178124594 Sample_02_0739 Blood Nalm6 964 2 337 14 0 139 1312 N4BP3,RMND5B,NHP2,HNRNPAB
SE_02_086000651 chr5:178113657-178128419 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 651 4 453 21 0 152 1608 N4BP3,RMND5B,NHP2
SE_02_037200435 chr5:178113711-178122769 Sample_02_0372 Skeletal muscle RMS008 435 2 273 8 0 125 854 N4BP3,NHP2,RMND5B
SE_02_074100801 chr5:178113756-178120815 Sample_02_0741 Muscle RH30 801 2 204 4 0 96 408 N4BP3,RMND5B,NHP2
SE_02_037400088 chr5:178113778-178125688 Sample_02_0374 Skeletal muscle RMS209 88 1 367 16 0 140 1496 N4BP3,NHP2,RMND5B
SE_02_058500667 chr5:178113836-178128259 Sample_02_0585 Umbilical vein HUVEC 0hour 667 11 442 21 0 147 1552 N4BP3,RMND5B,NHP2,HNRNPAB
SE_00_001900107 chr5:178113935-178128079 Sample_00_0019 Dermal fibroblasts iPS-20b 107 2 432 21 0 147 1530 N4BP3,NHP2,RMND5B
SE_00_001800182 chr5:178113992-178127955 Sample_00_0018 Dermal fibroblasts iPS-18axian 182 3 427 21 0 147 1525 N4BP3,NHP2,RMND5B
SE_02_006500735 chr5:178114055-178129267 Sample_02_0065 Embryo KO2-Late_G1 735 3 465 23 0 155 1525 N4BP3,NHP2,RMND5B
SE_02_006400427 chr5:178114081-178127915 Sample_02_0064 Embryo DN-Early_G1 427 3 425 21 0 147 1525 N4BP3,NHP2,RMND5B
SE_02_037700142 chr5:178114216-178124810 Sample_02_0377 Skeletal muscle RMS238 142 5 332 15 0 131 1271 N4BP3,NHP2,RMND5B
SE_02_067800088 chr5:178115066-178128539 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 88 12 428 20 0 140 1525 N4BP3,RMND5B,NHP2
SE_02_067700157 chr5:178115356-178129093 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 157 7 431 22 0 142 1525 N4BP3,RMND5B,NHP2
SE_02_068100336 chr5:178115387-178127579 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 336 4 381 18 0 128 1525 N4BP3,RMND5B,NHP2
SE_01_003100238 chr5:178115444-178127876 Sample_01_0031 Skin GM23338 238 3 397 20 0 122 1525 N4BP3,NHP2,RMND5B
SE_02_041800300 chr5:178115475-178126772 Sample_02_0418 Embryo H9_Null+EZH2 300 3 358 17 0 115 1525 N4BP3,NHP2,RMND5B
SE_02_067900270 chr5:178115491-178128199 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 270 13 402 20 0 122 1525 N4BP3,RMND5B,NHP2
SE_02_056000711 chr5:178115492-178127760 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 711 5 384 19 0 122 1525 N4BP3,RMND5B,NHP2
SE_02_056700260 chr5:178115676-178125583 Sample_02_0567 Mammary gland MCF7L-P_TAMR 260 5 324 15 0 115 1437 N4BP3,RMND5B,NHP2
Genomic distribution of SEs associated with N4BP3
Genome Browser

The strength of the tissue affected by the gene

Expression of N4BP3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)