Gene overview

Strategies/Algorithm: closest Ensembl ID:
Gene: LINC01578 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_140600055 chr15:92793202-92888576 Sample_02_1406 Prostate LNCaP_EtOH_vehicle_4h 55 17 3027 88 4 144 580 LINC01578,ASB9P1,CHD2,MIR3175
SE_01_010100079 chr15:92797355-92887042 Sample_01_0101 Pancreas pancreas_54y 79 16 2837 77 4 144 343 LINC01578,CHD2,MIR3175,ASB9P1
SE_02_115100070 chr15:92797511-92890984 Sample_02_1151 Mammary gland MCF-7_UNTR 70 53 2967 80 4 144 343 LINC01578,CHD2,MIR3175,ASB9P1,FAM174B,LOC100507217
SE_02_076200418 chr15:92797619-92887344 Sample_02_0762 Podocyte podocyte_CTL 418 16 2842 77 4 144 343 LINC01578,CHD2,MIR3175,ASB9P1
SE_02_105800279 chr15:92797623-92886156 Sample_02_1058 Bone A673_SA2 Rescue 279 19 2799 75 3 140 326 LINC01578,CHD2,MIR3175,ASB9P1
SE_02_104900188 chr15:92797687-92895041 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 188 75 3073 81 5 144 428 LINC01578,CHD2,MIR3175,ASB9P1
SE_02_082700737 chr15:92833529-92857764 Sample_02_0827 Stomach normal gastric 737 4 860 27 0 11 0 CHD2,LINC01578,MIR3175,ASB9P1
SE_02_115900538 chr15:92866298-92889439 Sample_02_1159 Mammary gland MCF7 538 7 646 13 3 85 343 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_085200537 chr15:92866298-92889469 Sample_02_0852 Mammary gland MCF7L-P 537 6 646 13 3 85 343 LINC01578,CHD2,MIR3175
SE_02_081000257 chr15:92866869-92894881 Sample_02_0810 Mammary gland T47D noSerum 257 15 796 15 4 85 411 LINC01578,CHD2,MIR3175
SE_02_157700232 chr15:92867473-92885543 Sample_02_1577 Mammary gland MCF7_DAC 232 9 489 8 2 69 313 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_052600208 chr15:92867474-92891538 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 208 10 695 13 3 85 343 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_056300313 chr15:92867775-92894899 Sample_02_0563 Mammary gland MCF7L-P_0h 313 9 779 15 4 85 412 LINC01578,CHD2,MIR3175
SE_02_052700212 chr15:92867896-92888444 Sample_02_0527 Mammary gland MCF7_WT 212 8 568 11 3 85 343 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_062500279 chr15:92867940-92885964 Sample_02_0625 Mammary gland WS8_4OHT 279 2 490 8 2 78 323 LINC01578,CHD2,MIR3175
SE_02_062700247 chr15:92868276-92886188 Sample_02_0627 Mammary gland WS8_VEH 247 2 486 8 2 83 328 LINC01578,CHD2,MIR3175
SE_02_116700775 chr15:92868299-92886321 Sample_02_1167 Biliary H69_TGF Vehicle_1 775 5 488 8 2 85 338 LINC01578,CHD2,MIR3175
SE_02_107600259 chr15:92868653-92888461 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 259 6 547 10 3 85 343 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_066700183 chr15:92868701-92885681 Sample_02_0667 Mammary gland MCF7_FA 183 4 458 7 2 73 320 LINC01578,CHD2,MIR3175,LOC100507217
SE_02_135900796 chr15:92868841-92886016 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 796 4 468 7 2 79 323 LINC01578,CHD2,MIR3175
SE_02_105700540 chr15:92868872-92886875 Sample_02_1057 Esophagus GihTRT 540 2 493 8 3 85 343 LINC01578,CHD2,MIR3175
SE_02_064300818 chr15:92868876-92886018 Sample_02_0643 Mammary gland MDA-MB-436 818 4 468 7 2 79 323 LINC01578,CHD2,MIR3175
SE_02_064200728 chr15:92868921-92885976 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 728 4 465 7 2 79 323 LINC01578,CHD2,MIR3175
SE_02_061501029 chr15:92868967-92885725 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 1029 2 455 7 2 73 320 LINC01578,CHD2,MIR3175
SE_02_111000812 chr15:92868974-92886316 Sample_02_1110 Other HGrC1 812 5 472 7 2 85 337 LINC01578,CHD2,MIR3175
SE_02_158401418 chr15:92868974-92886918 Sample_02_1584 Brain U87 GBM_Mock 1418 5 493 8 3 85 343 LINC01578,CHD2,MIR3175
SE_04_000600485 chr15:92869114-92887152 Sample_04_0006 Lung A549 GFP control 485 5 497 8 3 85 343 LINC01578,CHD2,MIR3175
SE_04_000100468 chr15:92869828-92887047 Sample_04_0001 Blood heat shocked K562 468 2 480 6 2 80 343 LINC01578,CHD2,MIR3175
SE_02_051100305 chr15:92869999-92888443 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 305 5 516 8 2 80 343 LINC01578,CHD2,MIR3175
SE_02_155900607 chr15:92870049-92887533 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 607 6 491 7 2 80 343 LINC01578,CHD2,MIR3175
SE_02_090901091 chr15:92870199-92889919 Sample_02_0909 Heart left ventricle_DCM_LV1264 1091 6 559 8 2 79 343 LINC01578,CHD2,MIR3175
SE_04_000200886 chr15:92876245-92887848 Sample_04_0002 Blood cold shocked K562 886 1 301 6 2 79 343 LINC01578,CHD2,MIR3175
SE_02_075701171 chr15:92876370-92886152 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 1171 2 245 4 1 75 326 LINC01578,CHD2,MIR3175
SE_02_113000620 chr15:92877128-92885928 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 620 3 216 4 1 72 323 LINC01578,CHD2,MIR3175
SE_02_111600721 chr15:92877517-92886275 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 721 3 216 4 1 77 335 LINC01578,CHD2,MIR3175
SE_02_146600228 chr15:92877837-92889015 Sample_02_1466 Blood HUDEP-2_BCL11AKO 228 1 298 7 2 79 343 LINC01578,CHD2,MIR3175
SE_02_054500532 chr15:92878006-92886145 Sample_02_0545 Bone marrow K562 WT 532 2 200 4 1 75 326 LINC01578,CHD2,MIR3175
SE_02_146800196 chr15:92878155-92890188 Sample_02_1468 Blood HUDEP-2_WT 196 1 329 7 1 79 343 LINC01578,CHD2,MIR3175
SE_02_047701001 chr15:92878470-92885925 Sample_02_0477 Colon intestinal epithelial organoids_139a 1001 5 182 4 0 72 323 LINC01578,CHD2,MIR3175
SE_02_101500863 chr15:92878474-92886339 Sample_02_1015 Embryo H9_ Undifferentiated 863 3 195 4 0 79 338 LINC01578,CHD2,MIR3175
SE_02_096200423 chr15:92878518-92886407 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 423 4 195 3 0 79 341 LINC01578,CHD2,MIR3175
SE_02_141300249 chr15:92878543-92886792 Sample_02_1413 Muscle RH4_sgBRG1 249 3 206 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_047800888 chr15:92878740-92887716 Sample_02_0478 Colon normal colon mucosa 888 6 234 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_122700754 chr15:92878767-92886251 Sample_02_1227 Bone marrow U266 754 3 185 3 0 77 335 LINC01578,CHD2,MIR3175
SE_02_075500984 chr15:92879104-92885557 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 984 2 158 3 0 63 314 LINC01578,CHD2,MIR3175
SE_02_101700804 chr15:92879444-92889181 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 804 1 263 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_075600594 chr15:92879463-92886675 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 594 3 188 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_095500190 chr15:92879475-92885954 Sample_02_0955 Brain IDH1_2469 190 3 165 2 0 72 323 LINC01578,CHD2,MIR3175
SE_02_096700947 chr15:92879660-92887123 Sample_02_0967 Brain H3.3K27M_JN57 947 5 192 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_097800159 chr15:92879716-92888096 Sample_02_0978 Brain 2168_IDH1 159 1 213 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_119000372 chr15:92879927-92885422 Sample_02_1190 Brain GBM24 372 2 127 2 0 63 306 LINC01578,CHD2,MIR3175
SE_02_098200292 chr15:92879930-92885481 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 292 2 127 2 0 63 311 LINC01578,CHD2,MIR3175
SE_02_144800398 chr15:92879963-92885845 Sample_02_1448 Adipose SW872_YAP5SA 398 2 139 2 0 67 323 LINC01578,CHD2,MIR3175
SE_02_119101103 chr15:92880020-92885757 Sample_02_1191 Brain GBM25 1103 2 134 2 0 67 320 LINC01578,CHD2,MIR3175
SE_02_096800202 chr15:92880030-92888471 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 202 1 220 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_069100107 chr15:92880048-92887775 Sample_02_0691 Lung NCI-H524_no infection 107 3 197 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_117700155 chr15:92880140-92898069 Sample_02_1177 Brain GBM05 155 1 490 12 2 86 601 LINC01578,CHD2,MIR3175
SE_02_085600594 chr15:92880190-92887541 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 594 1 191 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_073901014 chr15:92880209-92886144 Sample_02_0739 Blood Nalm6 1014 1 140 2 0 75 326 LINC01578,CHD2,MIR3175
SE_02_155800366 chr15:92880224-92886416 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 366 3 150 2 0 79 341 LINC01578,CHD2,MIR3175
SE_02_119700533 chr15:92880235-92885469 Sample_02_1197 Brain GBM33 533 1 121 2 0 63 310 LINC01578,CHD2,MIR3175
SE_02_135000321 chr15:92880268-92887313 Sample_02_1350 Leukophereses leukophereses_p456 321 1 183 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_097500134 chr15:92880284-92888812 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 134 3 226 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_140800336 chr15:92880285-92888889 Sample_02_1408 Prostate LNCaP_EtOH_vehicle_4h_MED19_OE 336 1 229 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_119400854 chr15:92880302-92887113 Sample_02_1194 Brain GBM28 854 3 173 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_094400136 chr15:92880304-92886567 Sample_02_0944 Brain TS576 136 3 156 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_119300579 chr15:92880336-92889453 Sample_02_1193 Brain GBM27 579 4 249 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_142800452 chr15:92880340-92889176 Sample_02_1428 Shoulder fibroblast_316 452 1 232 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_140700500 chr15:92880349-92888551 Sample_02_1407 Prostate LNCaP_R1881 4h 500 4 219 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_062400334 chr15:92880353-92887199 Sample_02_0624 Mammary gland TAMR_VEH 334 1 175 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_119800786 chr15:92880368-92889480 Sample_02_1198 Brain GBM34 786 5 249 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_101600669 chr15:92880377-92887049 Sample_02_1016 Embryo H9_Mesendoderm_24h 669 1 170 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_081800101 chr15:92880383-92889565 Sample_02_0818 Ovary High-grade serous ovarian cancer 101 1 255 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_083500695 chr15:92880399-92885494 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 695 1 120 2 0 63 311 LINC01578,CHD2,MIR3175
SE_02_062300363 chr15:92880435-92887892 Sample_02_0623 Mammary gland TAMR_E2 363 1 190 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_099100567 chr15:92880437-92886055 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 567 1 135 2 0 75 326 LINC01578,CHD2,MIR3175
SE_02_119900712 chr15:92880483-92887589 Sample_02_1199 Brain GBM35 712 1 187 4 1 79 343 LINC01578,CHD2,MIR3175
SE_02_106900467 chr15:92880507-92885341 Sample_02_1069 Bone marrow Bone marrow aspirate 467 2 115 2 0 61 302 LINC01578,CHD2,MIR3175
SE_02_069400169 chr15:92880521-92885866 Sample_02_0694 Lung NCI-H82_no infection 169 3 130 2 0 72 323 LINC01578,CHD2,MIR3175
SE_02_093100386 chr15:92880560-92886378 Sample_02_0931 Embryo H9 UTXKO 386 3 142 2 0 79 340 LINC01578,CHD2,MIR3175
SE_02_122000539 chr15:92880565-92885421 Sample_02_1220 Bone marrow JJN3 539 2 113 2 0 63 306 LINC01578,CHD2,MIR3175
SE_02_072200424 chr15:92880592-92888619 Sample_02_0722 Pancreas PATU8988S_TP63dN_DOX 424 5 214 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_096500308 chr15:92880596-92886786 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 308 2 153 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_044700755 chr15:92880597-92886994 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 755 2 162 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_055500566 chr15:92880654-92886460 Sample_02_0555 Other HAP1_WT 566 1 140 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_066800102 chr15:92880661-92891287 Sample_02_0668 Prostate prostate cancer FA 102 8 308 7 1 79 343 LINC01578,CHD2,MIR3175
SE_02_134800370 chr15:92880676-92886498 Sample_02_1348 Leukophereses leukophereses_p408 370 2 141 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_081600494 chr15:92880691-92886514 Sample_02_0816 Ovary Clear cell ovarian cancer 494 1 141 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_083300735 chr15:92880694-92885895 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 735 1 122 2 0 72 323 LINC01578,CHD2,MIR3175
SE_02_121100819 chr15:92880696-92885483 Sample_02_1211 Brain GBM21 819 1 108 2 0 63 311 LINC01578,CHD2,MIR3175
SE_02_083400791 chr15:92880705-92886049 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 791 2 127 2 0 75 325 LINC01578,CHD2,MIR3175
SE_02_117400543 chr15:92880706-92889288 Sample_02_1174 Brain GBM02 543 5 232 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_157400226 chr15:92880712-92885358 Sample_02_1574 Blood JURKAT 226 2 107 2 0 63 302 LINC01578,CHD2,MIR3175
SE_02_083600775 chr15:92880712-92886431 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 775 2 139 3 1 79 342 LINC01578,CHD2,MIR3175
SE_02_117200880 chr15:92880734-92885546 Sample_02_1172 Embryo H9 WT 880 2 109 2 0 63 313 LINC01578,CHD2,MIR3175
SE_02_155700436 chr15:92880741-92885482 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 436 2 106 2 0 63 311 LINC01578,CHD2,MIR3175
SE_02_050900364 chr15:92880749-92885985 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 364 2 123 2 0 73 323 LINC01578,CHD2,MIR3175
SE_02_081900737 chr15:92880758-92886544 Sample_02_0819 Ovary Mucinous ovarian cancer 737 1 140 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_049400391 chr15:92880759-92886187 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 391 2 129 2 0 77 328 LINC01578,CHD2,MIR3175
SE_02_132801265 chr15:92880760-92889027 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1265 5 219 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_051000435 chr15:92880780-92886910 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 435 3 152 3 1 79 343 LINC01578,CHD2,MIR3175
SE_01_010700966 chr15:92880788-92888553 Sample_01_0107 Esophagus esophagus squamous epithelium 966 1 206 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_098400239 chr15:92880793-92886437 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 239 2 137 3 1 79 342 LINC01578,CHD2,MIR3175
SE_02_122200379 chr15:92880794-92886085 Sample_02_1222 Bone marrow KMS12 379 2 125 2 0 75 326 LINC01578,CHD2,MIR3175
SE_02_105600443 chr15:92880797-92887110 Sample_02_1056 Esophagus ChTRT 443 1 158 3 1 79 343 LINC01578,CHD2,MIR3175
SE_02_097600346 chr15:92880803-92886418 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 346 2 136 3 1 79 342 LINC01578,CHD2,MIR3175
SE_02_083900741 chr15:92880824-92886423 Sample_02_0839 Embryo hNPCs_K755R/+ 741 2 137 3 1 79 342 LINC01578,CHD2,MIR3175
SE_02_149200980 chr15:92880879-92888583 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 980 1 205 5 1 79 343 LINC01578,CHD2,MIR3175
SE_02_124800466 chr15:92880902-92885072 Sample_02_1248 Bladder RT4 466 1 96 2 0 55 302 LINC01578,CHD2,MIR3175
SE_02_134900354 chr15:92881455-92886004 Sample_02_1349 Leukophereses leukophereses_p411 354 1 109 1 0 73 323 LINC01578,CHD2,MIR3175
SE_02_120000743 chr15:92882501-92887856 Sample_02_1200 Brain GBM36 743 1 131 2 1 72 343 LINC01578,CHD2,MIR3175
SE_02_118900391 chr15:92882513-92887959 Sample_02_1189 Brain GBM22 391 1 132 3 1 72 343 LINC01578,CHD2,MIR3175
SE_02_142600580 chr15:92882551-92886452 Sample_02_1426 Shoulder fibroblast_341 580 1 87 1 1 72 342 LINC01578,CHD2,MIR3175
SE_02_064500279 chr15:92882574-92889019 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 279 1 169 3 1 72 343 LINC01578,CHD2,MIR3175
SE_02_065800074 chr15:92882601-92888413 Sample_02_0658 Tracheobronchial epithelial HTBE_H5N1_18h 74 3 145 3 1 70 343 LINC01578,CHD2,MIR3175
SE_02_153800459 chr15:92882601-92893489 Sample_02_1538 Mammary gland MDA-MB-231 459 1 322 7 2 70 367 LINC01578,CHD2,MIR3175
SE_02_081700254 chr15:92882602-92888691 Sample_02_0817 Ovary Epithelial ovarian cancer 254 1 158 3 1 70 343 LINC01578,CHD2,MIR3175
SE_02_142700880 chr15:92882604-92886569 Sample_02_1427 Shoulder fibroblast_343 880 1 90 1 1 70 343 LINC01578,CHD2,MIR3175
SE_02_126200256 chr15:92882614-92885566 Sample_02_1262 Bone Im-GCT-3504_G34W 256 1 59 0 0 50 314 LINC01578,CHD2,MIR3175
SE_02_126700872 chr15:92882615-92887537 Sample_02_1267 Bone Im-GCT-4072_G34W 872 1 124 2 1 66 343 LINC01578,CHD2,MIR3175
SE_02_126100187 chr15:92882621-92886619 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 187 1 91 1 1 65 343 LINC01578,CHD2,MIR3175
SE_02_057500804 chr15:92882631-92886976 Sample_02_0575 Blood MOLM13_sgLKB1e2 804 1 103 1 1 64 343 LINC01578,CHD2,MIR3175
SE_02_125900216 chr15:92882631-92887454 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 216 1 123 2 1 64 343 LINC01578,CHD2,MIR3175
SE_02_097400270 chr15:92882632-92885832 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 270 1 68 0 0 52 323 LINC01578,CHD2,MIR3175
SE_02_097200776 chr15:92882632-92886739 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 776 1 95 1 1 64 343 LINC01578,CHD2,MIR3175
SE_02_065000492 chr15:92882634-92886076 Sample_02_0650 Tracheobronchial epithelial HTBE_H3N2_12h 492 1 74 0 0 60 326 LINC01578,CHD2,MIR3175
SE_02_076100410 chr15:92882635-92890131 Sample_02_0761 Ovary BIN-67_SMARCA4.T910M 410 1 207 3 1 64 343 LINC01578,CHD2,MIR3175
SE_02_095300582 chr15:92882645-92888727 Sample_02_0953 Brain H3.3K27M_1840 582 1 157 3 1 64 340 LINC01578,CHD2,MIR3175
SE_02_132500301 chr15:92882646-92885608 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 301 1 58 0 0 48 313 LINC01578,CHD2,MIR3175
SE_02_076000418 chr15:92882649-92889429 Sample_02_0760 Ovary BIN-67_SMARCA4 418 1 184 3 1 64 335 LINC01578,CHD2,MIR3175
SE_02_126400647 chr15:92882650-92888385 Sample_02_1264 Bone Im-GCT-4072_G34W KO 647 1 143 3 1 64 335 LINC01578,CHD2,MIR3175
SE_02_068500463 chr15:92882652-92885448 Sample_02_0685 Lung NCI-H1048_no infection 463 1 54 0 0 48 300 LINC01578,CHD2,MIR3175
SE_02_135100677 chr15:92882656-92892055 Sample_02_1351 Mammary gland MDA-MB-231-Erbeta_vehicle 677 1 275 6 2 64 345 LINC01578,CHD2,MIR3175
SE_02_045300853 chr15:92882659-92890164 Sample_02_0453 Neuroblastoma SJNB3 853 1 205 3 1 64 329 LINC01578,CHD2,MIR3175
SE_02_075900347 chr15:92882660-92893096 Sample_02_0759 Ovary BIN-67_Control 347 1 307 7 2 64 353 LINC01578,CHD2,MIR3175
SE_01_010400466 chr15:92882661-92889080 Sample_01_0104 Lung upper lobe of left lung 466 1 166 3 1 64 329 LINC01578,CHD2,MIR3175
SE_02_059300458 chr15:92882664-92885485 Sample_02_0593 Fetal spleenocytes fetal naive T cells 458 1 53 0 0 48 294 LINC01578,CHD2,MIR3175
SE_02_064900829 chr15:92882672-92885649 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 829 1 59 0 0 52 299 LINC01578,CHD2,MIR3175
SE_02_080900235 chr15:92882674-92896043 Sample_02_0809 Mammary gland T47D Serum 235 1 374 8 2 66 474 LINC01578,CHD2,MIR3175
SE_02_135400666 chr15:92882678-92892057 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 666 1 274 6 2 62 336 LINC01578,CHD2,MIR3175
SE_02_135300776 chr15:92882682-92889134 Sample_02_1353 Mammary gland MDA-MB-231-Erbeta_TNFa 776 1 166 3 1 62 322 LINC01578,CHD2,MIR3175
SE_02_120200285 chr15:92882682-92892082 Sample_02_1202 Brain GBM38 285 1 274 6 2 62 340 LINC01578,CHD2,MIR3175
SE_02_126000232 chr15:92882683-92886007 Sample_02_1260 Bone Im-GCT-3504_G34W-repair_4F5 232 1 71 0 0 55 302 LINC01578,CHD2,MIR3175
SE_02_142500421 chr15:92882686-92885928 Sample_02_1425 Shoulder fibroblast_384 421 1 68 0 0 54 301 LINC01578,CHD2,MIR3175
SE_02_117900613 chr15:92882686-92887747 Sample_02_1179 Brain GBM08 613 1 126 2 1 61 321 LINC01578,CHD2,MIR3175
SE_02_135200664 chr15:92882689-92891598 Sample_02_1352 Mammary gland MDA-MB-231-Erbeta_E2 664 1 262 5 1 61 321 LINC01578,CHD2,MIR3175
SE_02_136600421 chr15:92882690-92886009 Sample_02_1366 Pancreas BxPC3-untreated 421 1 71 0 0 55 301 LINC01578,CHD2,MIR3175
SE_02_096600575 chr15:92882690-92886453 Sample_02_0966 Brain H3.3K27M_JN29-BS3 575 1 84 1 1 61 320 LINC01578,CHD2,MIR3175
SE_02_074900514 chr15:92882693-92892690 Sample_02_0749 Mammary gland HCC1599_GSI 514 1 290 7 2 61 345 LINC01578,CHD2,MIR3175
SE_02_067401010 chr15:92882696-92885893 Sample_02_0674 Endometrium E1_FA 1010 1 67 0 0 54 301 LINC01578,CHD2,MIR3175
SE_02_068300237 chr15:92882696-92888676 Sample_02_0683 Lung DMS114 237 1 155 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_074800424 chr15:92882697-92893147 Sample_02_0748 Mammary gland HCC1599_WO 424 1 308 7 2 61 345 LINC01578,CHD2,MIR3175
SE_02_097300329 chr15:92882700-92887573 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 329 1 124 2 1 61 321 LINC01578,CHD2,MIR3175
SE_02_122300543 chr15:92882701-92889452 Sample_02_1223 Bone marrow KMS28BM 543 1 183 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_126500704 chr15:92882702-92888995 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 704 1 165 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_086600451 chr15:92882702-92890143 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 451 1 205 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_108900315 chr15:92882704-92892550 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 315 1 286 6 2 61 345 LINC01578,CHD2,MIR3175
SE_02_108700280 chr15:92882705-92892582 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 280 1 288 6 2 61 345 LINC01578,CHD2,MIR3175
SE_02_156001115 chr15:92882706-92888492 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1115 1 149 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_157301111 chr15:92882707-92887107 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1111 1 105 1 1 61 321 LINC01578,CHD2,MIR3175
SE_02_058400825 chr15:92882710-92886182 Sample_02_0584 Lung H1299 WT 825 1 76 0 0 59 305 LINC01578,CHD2,MIR3175
SE_02_126600876 chr15:92882710-92888281 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 876 1 134 3 1 61 321 LINC01578,CHD2,MIR3175
SE_02_108600247 chr15:92882710-92892554 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 247 1 286 6 2 61 345 LINC01578,CHD2,MIR3175
SE_02_064701079 chr15:92882714-92885562 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1079 1 56 0 0 45 291 LINC01578,CHD2,MIR3175
SE_02_108800479 chr15:92882717-92893016 Sample_02_1088 Mammary gland T47D_shCtrl_45min 479 1 301 7 2 58 343 LINC01578,CHD2,MIR3175
SE_02_145201266 chr15:92882719-92886453 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1266 1 83 1 1 58 317 LINC01578,CHD2,MIR3175
SE_00_004700478 chr15:92882719-92886483 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 478 1 84 1 1 58 318 LINC01578,CHD2,MIR3175
SE_02_067201075 chr15:92882719-92887813 Sample_02_0672 Endometrium endometrium cancer_DSG 1075 1 125 2 1 58 318 LINC01578,CHD2,MIR3175
SE_02_071301030 chr15:92882719-92888568 Sample_02_0713 Pancreas BxPC3_sgTP63 1030 1 152 3 1 58 318 LINC01578,CHD2,MIR3175
SE_02_109200343 chr15:92882721-92892571 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 343 1 286 6 2 58 341 LINC01578,CHD2,MIR3175
SE_02_064801445 chr15:92882722-92885759 Sample_02_0648 Tracheobronchial epithelial HTBE_H3N2_03h 1445 1 61 0 0 46 294 LINC01578,CHD2,MIR3175
SE_02_113300718 chr15:92882722-92888364 Sample_02_1133 Liver Hepatic stellate cells 718 1 140 3 1 58 317 LINC01578,CHD2,MIR3175
SE_02_059100459 chr15:92882723-92885505 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 459 1 54 0 0 42 285 LINC01578,CHD2,MIR3175
SE_02_122100488 chr15:92882724-92888822 Sample_02_1221 Bone marrow KMS11 488 1 157 3 1 58 317 LINC01578,CHD2,MIR3175
SE_01_010500838 chr15:92882727-92887744 Sample_01_0105 Thyroid gland thyroid gland_54y 838 1 125 2 1 58 315 LINC01578,CHD2,MIR3175
SE_02_067000096 chr15:92882730-92888973 Sample_02_0670 Mammary gland breast cancer FA 96 1 164 3 1 58 315 LINC01578,CHD2,MIR3175
SE_02_136201036 chr15:92882735-92887939 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 1036 1 127 3 1 58 314 LINC01578,CHD2,MIR3175
SE_02_109300350 chr15:92882735-92892562 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 350 1 286 6 2 58 338 LINC01578,CHD2,MIR3175
SE_02_067100219 chr15:92882740-92889156 Sample_02_0671 Mammary gland breast cancer_DSG 219 1 165 3 1 58 312 LINC01578,CHD2,MIR3175
SE_02_071201456 chr15:92882741-92888706 Sample_02_0712 Pancreas BxPC3_sgNEG 1456 1 155 3 1 58 312 LINC01578,CHD2,MIR3175
SE_02_109000161 chr15:92882742-92892126 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 161 1 275 6 2 58 330 LINC01578,CHD2,MIR3175
SE_02_155401044 chr15:92882746-92889467 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 1044 1 182 3 1 57 312 LINC01578,CHD2,MIR3175
SE_02_049300696 chr15:92882748-92886380 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 696 1 80 0 0 57 307 LINC01578,CHD2,MIR3175
SE_02_109100204 chr15:92882749-92890327 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 204 1 213 4 1 56 309 LINC01578,CHD2,MIR3175
SE_02_084001068 chr15:92882752-92886768 Sample_02_0840 Embryo hNPCs_R1159Q/+ 1068 1 92 1 1 56 307 LINC01578,CHD2,MIR3175
SE_02_136100759 chr15:92882752-92888672 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 759 1 154 3 1 56 307 LINC01578,CHD2,MIR3175
SE_02_086000401 chr15:92882754-92886346 Sample_02_0860 iPSCs SAH_SMARCB1_K364del/+ 401 1 80 0 0 56 301 LINC01578,CHD2,MIR3175
SE_02_096000486 chr15:92882755-92885451 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 486 1 52 0 0 40 270 LINC01578,CHD2,MIR3175
SE_02_086100465 chr15:92882772-92885621 Sample_02_0861 iPSCs SAH_WT 465 1 57 0 0 37 272 LINC01578,CHD2,MIR3175
SE_02_084200217 chr15:92882782-92885461 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 217 1 52 0 0 35 265 LINC01578,CHD2,MIR3175
SE_02_049500636 chr15:92882782-92886247 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 636 1 76 0 0 49 290 LINC01578,CHD2,MIR3175
SE_02_070700309 chr15:92882796-92888625 Sample_02_0707 Pancreas BxPC3 WT 309 1 153 3 1 51 295 LINC01578,CHD2,MIR3175
SE_02_066900535 chr15:92882796-92890239 Sample_02_0669 Prostate prostate cancer_DSG 535 1 206 3 1 51 295 LINC01578,CHD2,MIR3175
SE_02_149400440 chr15:92882800-92886601 Sample_02_1494 Other monocyte-derived dendritic cells_0h 440 2 87 1 1 51 294 LINC01578,CHD2,MIR3175
SE_02_048101264 chr15:92882822-92894902 Sample_02_0481 Mammary gland MDA-MB231 1264 1 350 7 2 50 362 LINC01578,CHD2,MIR3175
SE_02_071000819 chr15:92883083-92888044 Sample_02_0710 Pancreas hN34_organoid 819 1 123 3 1 44 217 LINC01578,CHD2,MIR3175
SE_02_116300155 chr15:92883095-92886382 Sample_02_1163 Embryonic kidney HEK293 no dox 155 1 76 0 0 44 207 LINC01578,CHD2,MIR3175
SE_02_151300148 chr15:92883418-92897636 Sample_02_1513 Lung Transitional AT2->1 cells 148 1 401 9 2 42 328 LINC01578,CHD2,MIR3175
SE_02_151400489 chr15:92883522-92892229 Sample_02_1514 Lung Differentiated AT1-like cells 489 1 263 6 2 38 102 LINC01578,CHD2,MIR3175

Genomic distribution of SEs associated with LINC01578

The strength of the tissue affected by the gene


Expression of LINC01578