SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000254275
Gene: LINC00824 Gene type: lncRNA
Strand: - External links:
Genomic region: chr8:128405269-128564679 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_098300020 chr8:128371674-128390978 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 20 5 719 0 0 29 0 LINC00824
SE_02_076600718 chr8:128383853-128396908 Sample_02_0766 Ovary PEO1 718 6 436 1 0 35 0 LINC00824,MIR1208
SE_02_098000206 chr8:128385165-128390977 Sample_02_0980 Brain BT245 206 3 222 0 0 11 0 LINC00824
SE_02_098100221 chr8:128418076-128437043 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 221 4 607 0 3 65 166 LINC00824
SE_02_074900620 chr8:128423528-128430942 Sample_02_0749 Mammary gland HCC1599_GSI 620 3 251 0 2 44 113 LINC00824,MIR1208
SE_02_074801000 chr8:128423780-128431134 Sample_02_0748 Mammary gland HCC1599_WO 1000 3 249 0 2 43 78 LINC00824,MIR1208
SE_02_051000448 chr8:128423943-128430459 Sample_02_0510 Prostate LNCaP95_shGFP_DHT 448 3 222 0 2 38 78 LINC00824,MIR1208
SE_02_051100439 chr8:128424024-128430593 Sample_02_0511 Prostate LNCaP95_shARv7_ETOH 439 2 218 0 2 37 78 LINC00824,MIR1207
SE_02_050900455 chr8:128424031-128430400 Sample_02_0509 Prostate LNCaP95_shGFP_ETOH 455 3 212 0 2 37 78 LINC00824,MIR1208
SE_02_085600332 chr8:128424238-128436970 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 332 3 403 0 2 46 78 LINC00824
SE_02_095900034 chr8:128424299-128436512 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 34 6 385 0 2 45 78 LINC00824
SE_02_123700444 chr8:128425865-128471016 Sample_02_1237 Skin MKL2_virus_positive 444 12 1277 0 6 98 78 LINC00824,MIR1208
SE_02_123100322 chr8:128427058-128429815 Sample_02_1231 Lung PC9_siMED13L-1 322 2 86 0 0 14 78 LINC00824
SE_02_123300410 chr8:128427071-128429841 Sample_02_1233 Lung PC9_miR-4497 mimic 410 2 86 0 0 14 78 LINC00824,MIR1208
SE_02_123200350 chr8:128427094-128429842 Sample_02_1232 Lung PC9_siMED13L-2 350 2 86 0 0 14 78 LINC00824,MIR1208
SE_02_105800358 chr8:128486832-128538209 Sample_02_1058 Bone A673_SA2 Rescue 358 10 1601 1 9 161 0 LINC00824,MIR1208
SE_02_105900307 chr8:128487332-128529545 Sample_02_1059 Bone A673_WT 307 8 1308 1 4 124 0 LINC00824,MIR1208
SE_02_147300307 chr8:128487332-128529545 Sample_02_1473 Bone A-673 307 8 1308 1 4 124 0 LINC00824,MIR1208
SE_02_098100046 chr8:128487652-128540977 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 46 11 1670 1 10 177 0 LINC00824
SE_02_095800452 chr8:128487952-128530726 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 452 6 1340 1 5 125 0 LINC00824
SE_02_095900017 chr8:128489484-128541042 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 17 9 1623 1 10 177 0 LINC00824
SE_02_071100669 chr8:128499217-128536492 Sample_02_0711 Pancreas hN35_organoid 669 12 1166 0 9 93 0 LINC00824,MIR1208
SE_02_060900518 chr8:128499756-128557497 Sample_02_0609 Liposarcoma LPS141 518 20 1792 0 15 206 0 LINC00824
SE_02_139100273 chr8:128507561-128557516 Sample_02_1391 Peripheral blood FE-PD_ALK- 273 9 1550 0 14 191 0 LINC00824
SE_02_113300359 chr8:128507744-128525348 Sample_02_1133 Liver Hepatic stellate cells 359 5 546 0 2 61 0 LINC00824,MIR1208
SE_02_132800748 chr8:128508146-128525387 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 748 9 538 0 2 60 0 LINC00824,MIR1208
SE_02_138900138 chr8:128508347-128557463 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 138 8 1530 0 14 185 0 LINC00824
SE_02_138600613 chr8:128508448-128522488 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 613 12 440 0 2 41 0 LINC00824
SE_02_138800701 chr8:128508450-128522512 Sample_02_1388 Peripheral blood JB6_ALK+ 701 5 441 0 2 41 0 LINC00824
SE_02_045600319 chr8:128508453-128560523 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 319 11 1612 0 14 189 160 LINC00824
SE_02_088001454 chr8:128508546-128525317 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1454 3 529 0 2 60 0 LINC00824
SE_02_045700055 chr8:128508995-128557410 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 55 11 1507 0 14 185 0 LINC00824
SE_02_045500239 chr8:128509421-128557590 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 239 9 1497 0 14 183 0 LINC00824
SE_02_085600405 chr8:128511051-128525576 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 405 3 456 0 3 53 0 LINC00824
SE_02_143801246 chr8:128513780-128544157 Sample_02_1438 Liver LSEC 1246 5 972 0 12 105 0 LINC00824,MIR1208
SE_02_143701261 chr8:128513809-128544162 Sample_02_1437 Liver LSEC-TNF 1261 5 969 0 12 105 0 LINC00824,MIR1208
SE_02_094400014 chr8:128513884-128529831 Sample_02_0944 Brain TS576 14 3 502 0 3 41 0 LINC00824
SE_02_098300012 chr8:128514078-128539952 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 12 7 823 0 9 81 0 LINC00824
SE_02_098000042 chr8:128514079-128530549 Sample_02_0980 Brain BT245 42 6 527 0 4 41 0 LINC00824
SE_02_143601173 chr8:128514148-128543637 Sample_02_1436 Liver LSEC-Ctrl 1173 8 941 0 11 104 0 LINC00824,MIR1208
SE_02_147700364 chr8:128520449-128531498 Sample_02_1477 Bone EW-22 364 3 353 0 2 27 0 LINC00824,MIR1208
SE_02_052300008 chr8:128526774-128560798 Sample_02_0523 Lung NCIH810 8 4 1043 0 11 128 176 LINC00824
SE_02_045400684 chr8:128535944-128557784 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 684 5 673 0 8 113 0 LINC00824
SE_02_048101084 chr8:128536048-128558571 Sample_02_0481 Mammary gland MDA-MB231 1084 8 681 0 6 114 0 LINC00824,MIR1208
SE_02_138600764 chr8:128538705-128556701 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 764 8 542 0 6 69 0 LINC00824
SE_02_068700666 chr8:128538742-128558619 Sample_02_0687 Lung NCI-H146_no infection 666 5 596 0 6 85 0 LINC00824,MIR1208
SE_02_138800646 chr8:128539178-128557471 Sample_02_1388 Peripheral blood JB6_ALK+ 646 4 556 0 5 80 0 LINC00824
SE_02_052200096 chr8:128540712-128557778 Sample_02_0522 Colon SW620 96 5 515 0 5 70 0 LINC00824
SE_02_152300233 chr8:128546678-128560908 Sample_02_1523 Lung A549 DMSO 233 6 430 0 2 58 177 LINC00824
SE_02_052100292 chr8:128552884-128560771 Sample_02_0521 Colon SW480 292 3 235 0 2 44 176 LINC00824
SE_02_150900275 chr8:128552909-128558662 Sample_02_1509 Lung H3122_LR 275 4 177 0 2 41 0 LINC00824
SE_02_123200571 chr8:128553023-128557493 Sample_02_1232 Lung PC9_siMED13L-2 571 3 139 0 2 39 0 LINC00824,MIR1208
SE_02_123300734 chr8:128553802-128557661 Sample_02_1233 Lung PC9_miR-4497 mimic 734 1 124 0 2 38 0 LINC00824,MIR1208
SE_02_045700699 chr8:128571324-128599337 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 699 6 840 0 1 149 0 LINC00824
SE_02_045700576 chr8:128652633-128686889 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 576 17 825 0 3 65 0 LINC00824
SE_02_085800120 chr8:128776532-128795710 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 120 4 489 0 8 63 0 LINC00824,LINC00977
SE_02_044300308 chr8:128776625-128796592 Sample_02_0443 Bone MG63 308 9 508 0 8 64 0 LINC00824
SE_02_097200046 chr8:128786078-128795428 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 46 3 238 0 3 55 0 LINC00824
SE_02_098300186 chr8:128787591-128795270 Sample_02_0983 Brain H3.3K27M_BT245-C1P5 186 3 198 0 2 52 0 LINC00824
SE_02_094400034 chr8:128792209-128796434 Sample_02_0944 Brain TS576 34 2 121 0 3 37 0 LINC00824
SE_02_131000548 chr8:128824257-128901973 Sample_02_1310 Bone marrow ASMSCs 548 17 2136 1 22 192 0 LINC00824
SE_02_155200408 chr8:128836729-128901319 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 408 29 1812 1 18 138 0 LINC00824,LINC00977
SE_02_157100799 chr8:128837774-128901406 Sample_02_1571 Fibroblast Fibroblast cells 799 16 1787 1 18 137 0 LINC00824,LINC00977
SE_02_055400112 chr8:128844708-128901171 Sample_02_0554 Other Aska shSSX 112 17 1572 1 15 113 0 LINC00824,LINC00977
SE_02_085800005 chr8:128844747-128884952 Sample_02_0858 Glioblastoma Glioblastoma neurosphere cell_HF-3177 5 5 1086 0 13 86 0 LINC00824,LINC00977
SE_02_086400199 chr8:128845002-128883936 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 199 8 1054 0 11 86 0 LINC00824
SE_02_086500205 chr8:128845028-128882704 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 205 12 1019 0 9 86 0 LINC00824,LINC00977
SE_02_154800565 chr8:128845139-128884331 Sample_02_1548 Gastrointestinal Stromal GIST-226 565 10 1063 0 11 86 0 LINC00824,LINC00977
SE_02_085400743 chr8:128846428-128874807 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 743 4 747 0 5 68 0 LINC00824
SE_02_086600172 chr8:128849574-128884110 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 172 7 947 0 10 77 0 LINC00824,LINC00977
SE_02_086300192 chr8:128849641-128880638 Sample_02_0863 Malignant rhaboid tumor TTC1240_empty 192 8 842 0 8 76 0 LINC00824,LINC00977
SE_02_086200209 chr8:128850010-128879536 Sample_02_0862 Malignant rhaboid tumor TTC1240_SMARCB1 FL 209 6 797 0 8 76 0 LINC00824,MIR3686
SE_00_004800459 chr8:128859688-128874516 Sample_00_0048 Embryo neuronal stem cell originated from H1 459 7 374 0 2 54 0 LINC00824,MIR3686
SE_02_055100148 chr8:128859753-128882894 Sample_02_0551 Other Aska-BAF47KO1 shSSX 148 4 617 0 7 72 0 LINC00824,LINC00977
SE_02_055300373 chr8:128860245-128878498 Sample_02_0553 Other HSSY2 shCt 373 3 474 0 6 71 0 LINC00824,LINC00977
SE_02_043900418 chr8:128860795-128877603 Sample_02_0439 Bone Hu09 418 4 438 0 3 71 0 LINC00824,LINC00977
SE_02_054900095 chr8:128861291-128882036 Sample_02_0549 Other Aska shCt 95 10 558 0 5 71 0 LINC00824,LINC00977
SE_02_052300123 chr8_KI270810v1_alt:0-6064 Sample_02_0523 Lung NCIH810 123 3 0 0 0 0 0 LINC00824
Genomic distribution of SEs associated with LINC00824
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00824

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)