Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_055100025 chr1:12404226-12487387 83161 25 15 2060 26 2 435 289 VPS13D,SNORA59A
SE_02_055100104 chr1:172135255-172148245 12990 104 1 290 11 0 104 628 MIR214,DNM3OS,DNM3,MIR199A2,MIR3120
SE_02_055100013 chr1:172320179-172425517 105338 13 11 2444 196 16 497 941 DNM3,C1ORF105,PIGC
SE_02_055100052 chr1:196467299-196610978 143679 52 29 3573 130 18 251 284 KCNT2,MIR4735,CFH
SE_02_055100080 chr1:234598482-234620273 21791 80 6 599 41 2 0 780 IRF2BP2,LOC101927787,LINC00184
SE_02_055100061 chr1:23544462-23578993 34531 61 13 996 54 1 209 382 ID3,E2F2,LOC101928163,MDS2
SE_02_055100151 chr1:63944810-64007257 62447 151 14 1557 77 2 226 0 ROR1,ROR1-AS1
SE_02_055100143 chr1:64124388-64184638 60250 143 24 1515 112 14 400 840 ROR1,ROR1-AS1,UBE2U
SE_02_055100027 chr1:81697470-81762951 65481 27 10 1771 61 10 257 64 ADGRL2
SE_02_055100082 chr1:81801448-81848308 46860 82 12 1298 77 0 254 72 ADGRL2
SE_02_055100090 chr1:81873316-81903387 30071 90 1 766 21 3 99 0 ADGRL2
SE_02_055100056 chr10:27987251-28056587 69336 56 16 1865 72 3 111 564 MPP7,ARMC4
SE_02_055100113 chr10:28076184-28124936 48752 113 23 1280 70 7 72 198 MPP7,ARMC4
SE_02_055100097 chr10:43380588-43421299 40711 97 11 1246 133 3 135 1044 HNRNPF,ZNF487,FXYD4
SE_02_055100130 chr10:4497676-4530251 32575 130 8 1017 3 5 82 60 LINC00703
SE_02_055100002 chr10:4596669-4792167 195498 2 19 6250 178 18 293 437 LINC00705,LINC00704,AKR1E2
SE_02_055100044 chr10:61959956-62054800 94844 44 23 2406 38 16 673 290 ARID5B
SE_02_055100048 chr10:89245268-89311188 65920 48 20 1660 120 7 57 807 IFIT2,LIPA,CH25H,IFIT3
SE_02_055100099 chr10:89325520-89370020 44500 99 5 1239 186 2 32 449 IFIT3,IFIT1,IFIT1B,IFIT5,IFIT2
SE_02_055100123 chr11:122147054-122160834 13780 123 1 384 4 2 96 80 MIR100,MIR100HG,MIR125B1,MIRLET7A2,BLID
SE_02_055100032 chr11:122172180-122211641 39461 32 1 1014 28 3 212 146 MIR100HG,MIR100,MIRLET7A2
SE_02_055100095 chr11:33687587-33716141 28554 95 5 800 74 3 61 1352 CD59,C11ORF91
SE_02_055100100 chr11:65415954-65457462 41508 100 14 1138 89 2 52 2791 NEAT1,MIR612,MALAT1,SLC25A45,FRMD8
SE_02_055100038 chr11:65470425-65510887 40462 38 10 1152 120 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_055100136 chr12:124909010-124941473 32463 136 8 1183 41 4 71 1108 MIR5188,UBC,SCARB1,DHX37
SE_02_055100147 chr12:13145283-13179415 34132 147 8 856 50 2 87 0 GSG1,EMP1
SE_02_055100109 chr12:13193057-13230325 37268 109 12 1036 55 12 130 508 EMP1
SE_02_055100026 chr12:15111897-15227806 115909 26 25 2786 207 12 264 213 RERG,RERG-AS1
SE_02_055100007 chr12:46357877-46575169 217292 7 41 5539 351 6 483 822 SLC38A2,LOC100288798
SE_02_055100049 chr12:65300012-65344101 44089 49 7 1083 37 3 171 162 MSRB3
SE_02_055100139 chr12:65357976-65394116 36140 139 8 803 28 8 70 40 MSRB3
SE_02_055100073 chr12:65408294-65466125 57831 73 11 1449 74 9 23 382 MSRB3
SE_02_055100091 chr12:65493781-65538849 45068 91 10 1268 33 6 139 0 LOC100507065
SE_02_055100124 chr12:65600629-65659187 58558 124 18 1554 71 2 241 0 LOC100507065
SE_02_055100050 chr12:77781566-77866893 85327 50 21 2331 48 3 172 54 NAV3
SE_02_055100107 chr12:77913401-77971782 58381 107 17 1524 75 13 122 125 NAV3
SE_02_055100069 chr12:87777213-87820964 43751 69 2 1101 56 1 102 272 MKRN9P
SE_02_055100137 chr12:87846179-87903674 57495 137 7 1468 8 8 131 0 MKRN9P
SE_02_055100064 chr12:91105410-91191016 85606 64 17 2133 94 7 186 608 DCN,LUM,KERA
SE_02_055100131 chr12:91306644-91357422 50778 131 10 1244 69 0 85 0 DCN
SE_02_055100062 chr13:110369804-110434122 64318 62 18 2008 92 17 160 367 COL4A2,MIR8073
SE_02_055100119 chr13:37107683-37145766 38083 119 4 1004 68 2 24 0 CSNK1A1L,SUPT20H
SE_02_055100076 chr13:37477491-37511631 34140 76 8 988 37 5 37 0 LINC01048,LINC00547
SE_02_055100020 chr13:67029282-67150472 121190 20 33 2939 129 6 545 0 PCDH9,PCDH9-AS4
SE_02_055100126 chr13:67188012-67235491 47479 126 18 1083 56 1 408 577 PCDH9
SE_02_055100065 chr13:80331274-80365510 34236 65 6 858 13 0 252 577 SPRY2
SE_02_055100093 chr13:80433371-80476804 43433 93 11 1181 3 0 97 0 SPRY2
SE_02_055100039 chr13:80526556-80579090 52534 39 13 1406 11 9 106 0 SPRY2
SE_02_055100094 chr13:80599297-80644986 45689 94 12 1188 31 1 61 0 SPRY2
SE_02_055100012 chr13:80864739-80968627 103888 12 11 2564 198 3 128 0 LINC00377
SE_02_055100115 chr14:22822704-22853833 31129 115 4 942 93 8 256 1865 MMP14,MRPL52,SLC7A7,REM2,LRP10
SE_02_055100110 chr14:24839202-24901688 62486 110 11 1590 90 3 165 125 STXBP6
SE_02_055100117 chr14:61559233-61589183 29950 117 4 781 34 6 98 913 LOC101927780,FLJ22447
SE_02_055100015 chr17:59745762-59860664 114902 15 37 2524 242 8 281 534 TUBD1,MIR21,VMP1,PTRH2,RPS6KB1
SE_02_055100077 chr18:33088378-33138816 50438 77 10 1154 78 0 233 61 CCDC178
SE_02_055100060 chr18:3592392-3630581 38189 60 9 1025 57 5 81 771 DLGAP1,DLGAP1-AS2,DLGAP1-AS1
SE_02_055100084 chr18:361013-433277 72264 84 26 2242 167 14 182 0 COLEC12
SE_02_055100054 chr18:48776594-48903117 126523 54 30 3828 37 14 529 1067 CTIF,SMAD7
SE_02_055100053 chr18:6728061-6785188 57127 53 8 1545 150 7 139 0 ARHGAP28
SE_02_055100024 chr2:142036091-142140351 104260 24 15 2789 217 6 334 219 LRP1B
SE_02_055100085 chr2:150122235-150175691 53456 85 11 1513 19 3 205 0 RND3
SE_02_055100023 chr2:187481870-187587253 105383 23 15 2694 195 3 23 224 TFPI,CALCRL
SE_02_055100153 chr2:50108320-50144799 36479 153 13 1135 0 3 82 0 NRXN1
SE_02_055100045 chr2:99802088-99893332 91244 45 21 2433 96 8 285 51 AFF3
SE_02_055100006 chr20:52971041-53127294 156253 6 28 4362 26 17 706 340 TSHZ2
SE_02_055100035 chr21:34514034-34568966 54932 35 7 1750 280 3 113 520 RCAN1,KCNE1
SE_02_055100066 chr22:30187109-30258637 71528 66 15 1940 171 15 423 1238 LIF,OSM,GATSL3
SE_02_055100033 chr3:100001112-100109440 108328 33 29 2497 153 12 380 322 FILIP1L,CMSS1,MIR3921
SE_02_055100132 chr3:189997541-190049436 51895 132 15 1571 134 10 80 0 P3H2,P3H2-AS1
SE_02_055100101 chr3:69760414-69857227 96813 101 18 2580 254 2 370 137 MITF
SE_02_055100122 chr3:78721287-78767866 46579 122 10 1200 0 3 223 39 ROBO1
SE_02_055100079 chr3:78801156-78921770 120614 79 41 3037 105 2 489 0 ROBO1
SE_02_055100014 chr3:99832363-99985167 152804 14 35 3650 181 35 693 887 FILIP1L,MIR3921,CMSS1,HP09053
SE_02_055100138 chr4:109045555-109130778 85223 138 18 2170 76 11 192 62 COL25A1
SE_02_055100036 chr4:123821683-123941955 120272 36 20 3063 120 8 258 325 LINC01091
SE_02_055100055 chr4:124140478-124214864 74386 55 13 1931 30 5 51 0 LOC101927087,LINC01091
SE_02_055100086 chr4:53363043-53379797 16754 86 2 464 44 0 78 482 SCFD2,FIP1L1
SE_02_055100072 chr4:54062470-54067203 4733 72 2 101 3 1 52 200 CHIC2,GSX2
SE_02_055100058 chr4:54657436-54664040 6604 58 1 217 1 0 44 127 KIT
SE_02_055100083 chr4:61437724-61533328 95604 83 31 2433 10 3 241 136 ADGRL3
SE_02_055100152 chr4:69707441-69735627 28186 152 8 923 114 2 15 144 SULT1B1
SE_02_055100067 chr4:69752518-69792011 39493 67 8 1125 66 2 21 128 SULT1B1
SE_02_055100112 chr4:69810959-69861409 50450 112 18 1557 92 11 54 332 SULT1E1
SE_02_055100087 chr4:76535105-76627256 92151 87 24 2450 218 16 248 174 MIR548AH,SHROOM3,MIR4450
SE_02_055100128 chr4:94756313-94777749 21436 128 1 561 10 7 124 117 BMPR1B-AS1,BMPR1B
SE_02_055100142 chr5:124629268-124680718 51450 142 12 1347 27 2 546 787 ZNF608
SE_02_055100078 chr5:124696432-124754901 58469 78 13 1472 10 11 586 413 ZNF608
SE_02_055100140 chr5:126120937-126142423 21486 140 4 589 20 0 77 0 LOC102546228
SE_02_055100071 chr5:128749193-128794411 45218 71 6 1173 127 9 138 0 SLC27A6
SE_02_055100108 chr5:158723810-158771359 47549 108 15 1201 20 1 545 40 EBF1,LOC101927697
SE_02_055100042 chr5:158957813-159075068 117255 42 26 2805 74 14 1250 54 EBF1,LOC101927740
SE_02_055100046 chr5:36605299-36693341 88042 46 15 2293 94 9 319 942 SLC1A3
SE_02_055100141 chr5:93576003-93607826 31823 141 6 599 17 1 712 1079 NR2F1,NR2F1-AS1,MIR2277
SE_02_055100150 chr6:112977717-112992539 14822 150 5 347 1 0 16 0 RFPL4B,LOC101927686
SE_02_055100040 chr6:113005248-113076166 70918 40 9 1809 19 2 48 0 LOC101927686
SE_02_055100125 chr6:113101343-113131896 30553 125 4 840 10 1 42 0 LOC101927686
SE_02_055100018 chr6:113279291-113415012 135721 18 38 3817 221 8 339 0 LOC101927686
SE_02_055100133 chr6:131946427-131996536 50109 133 10 1220 68 1 179 512 CTGF
SE_02_055100129 chr6:55441719-55453154 11435 129 1 305 22 2 11 0 HMGCLL1,GFRAL
SE_02_055100029 chr6:55662755-55715623 52868 29 7 1562 48 11 67 0 HMGCLL1
SE_02_055100004 chr6:55743537-55959345 215808 4 49 5795 368 19 421 377 BMP5
SE_02_055100102 chr6:57468703-57521012 52309 102 8 758 89 0 0 0 PRIM2,MIR548U
SE_02_055100068 chr7:103701323-103738572 37249 68 7 1190 77 2 126 67 RELN
SE_02_055100118 chr7:105002238-105018249 16011 118 5 472 16 0 101 724 KMT2E,KMT2E-AS1,LINC01004
SE_02_055100106 chr7:108523708-108527379 3671 106 1 113 19 0 8 139 PNPLA8,DNAJB9,THAP5
SE_02_055100092 chr7:108567314-108571894 4580 92 1 146 8 0 35 274 DNAJB9,THAP5,PNPLA8
SE_02_055100074 chr7:112449726-112465720 15994 74 3 423 65 4 0 500 IFRD1,LSMEM1
SE_02_055100009 chr7:116209167-116243540 34373 9 6 771 88 0 119 456 TES,LOC102724434
SE_02_055100096 chr7:116353100-116358909 5809 96 1 154 9 0 55 46 LOC102724434
SE_02_055100047 chr7:116612955-116631528 18573 47 4 457 3 0 57 0 LINC01510,MET
SE_02_055100019 chr7:116665540-116717624 52084 19 11 1301 73 5 330 323 MET
SE_02_055100135 chr7:116861952-116864755 2803 135 1 60 4 0 22 140 CAPZA2
SE_02_055100116 chr7:118182881-118187555 4674 116 2 138 25 0 7 149 LSM8,ANKRD7
SE_02_055100144 chr7:130886954-130922816 35862 144 10 1104 63 4 122 118 LOC100506860,LINC-PINT,MIR29A,MIR29B1
SE_02_055100134 chr7:15288923-15336096 47173 134 16 1609 16 3 121 0 AGMO
SE_02_055100028 chr7:15455315-15519064 63749 28 8 2039 84 6 196 0 AGMO
SE_02_055100070 chr7:15532841-15563178 30337 70 3 947 35 1 44 129 AGMO
SE_02_055100043 chr7:15600946-15697654 96708 43 47 3059 132 13 309 702 MEOX2-AS1,MEOX2,AGMO
SE_02_055100111 chr7:15834591-15857861 23270 111 6 796 18 6 166 0 MEOX2-AS1
SE_02_055100121 chr7:16060182-16099210 39028 121 10 1170 47 2 144 318 ISPD,ISPD-AS1
SE_02_055100075 chr7:81460840-81503809 42969 75 6 1320 0 1 50 0 LOC100128317
SE_02_055100001 chr7:81525716-81773496 247780 1 30 6056 30 12 713 1557 LOC100128317,HGF
SE_02_055100105 chr7:81956396-81966890 10494 105 1 260 0 0 40 195 CACNA2D1,LOC101927356
SE_02_055100003 chr7:84007219-84202879 195660 3 51 5184 370 34 794 333 SEMA3A
SE_02_055100017 chr7:84246487-84373495 127008 17 28 3170 63 7 376 0 SEMA3A
SE_02_055100059 chr7:91545137-91573899 28762 59 5 763 24 6 152 0 FZD1
SE_02_055100030 chr7:91618015-91663433 45418 30 4 1094 19 6 152 0 MTERF1
SE_02_055100005 chr8:115238616-115363358 124742 5 17 3278 15 10 320 0 TRPS1
SE_02_055100011 chr8:115399393-115496048 96655 11 22 2311 34 8 772 588 TRPS1
SE_02_055100098 chr8:115647989-115669820 21831 98 3 498 24 0 287 275 TRPS1
SE_02_055100148 chr8:128859753-128882894 23141 148 4 617 0 7 72 0 LINC00824,LINC00977
SE_02_055100037 chr8:129117454-129247680 130226 37 43 3816 2 12 393 200 LINC00977
SE_02_055100103 chr8:13084667-13133322 48655 103 20 1880 70 4 263 1188 DLC1
SE_02_055100063 chr8:13188937-13247308 58371 63 19 2199 107 4 213 79 DLC1
SE_02_055100016 chr8:13402453-13518710 116257 16 25 4689 110 23 336 194 DLC1,C8ORF48
SE_02_055100081 chr8:48512865-48561435 48570 81 9 1192 44 8 137 0 LOC101929268
SE_02_055100034 chr8:6557343-6610779 53436 34 5 2349 39 6 173 124 ANGPT2,MCPH1,MIR8055
SE_02_055100146 chr8:77632121-77668562 36441 146 10 1043 53 0 88 0 LOC102724874
SE_02_055100089 chr8:91209707-91253249 43542 89 7 956 69 7 119 115 SLC26A7,LRRC69,MIR4661
SE_02_055100120 chr8:99700900-99728687 27787 120 8 602 19 4 128 113 VPS13B,MIR875
SE_02_055100031 chr8:99778258-99807857 29599 31 4 584 27 0 150 98 VPS13B,COX6C
SE_02_055100145 chr8_KI270810v1_alt:308056-332844 24788 145 5 0 0 0 0 0
SE_02_055100088 chr9:125883207-125916533 33326 88 4 730 77 2 658 63 PBX3
SE_02_055100127 chr9:129479031-129500151 21120 127 6 594 34 0 74 419 LINC00963
SE_02_055100149 chr9:130823382-130850574 27192 149 2 713 53 3 59 120 ABL1,QRFP
SE_02_055100041 chr9:13410649-13450290 39641 41 9 1140 32 0 274 140 FLJ41200
SE_02_055100114 chr9:13477713-13495014 17301 114 4 504 17 0 147 0 FLJ41200
SE_02_055100022 chr9:13529634-13617446 87812 22 15 3147 9 9 323 0 FLJ41200
SE_02_055100010 chr9:14133685-14222401 88716 10 15 2776 63 5 395 184 NFIB
SE_02_055100057 chr9:14308791-14324408 15617 57 1 377 1 0 233 191 NFIB
SE_02_055100051 chr9:18253128-18270861 17733 51 3 660 2 2 103 0 ADAMTSL1
SE_02_055100008 chr9:18314059-18401747 87688 8 14 2960 41 4 360 0 ADAMTSL1
SE_02_055100021 chr9:18417855-18502193 84338 21 16 2707 106 5 537 75 ADAMTSL1

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2887584
Input ID: Name:GSM2887586
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb