SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000196668
Gene: LINC00173 Gene type: lncRNA
Strand: + External links:
Genomic region: chr12:116533422-116536518 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_047900868 chr12:116480723-116557689 Sample_02_0479 Head and neck SCC25 868 29 2163 163 2 101 566 LINC00173,MAP1LC3B2
SE_02_124200130 chr12:116481390-116561708 Sample_02_1242 Skin UISO_virus_negative 130 20 2256 166 2 124 632 MAP1LC3B2,LINC00173
SE_02_087200049 chr12:116482145-116531437 Sample_02_0872 Colon HCT116_siCtrl-5FU 49 20 1470 107 1 37 0 MAP1LC3B2,LINC00173
SE_02_146400125 chr12:116482584-116508135 Sample_02_1464 Ovary CAOV4 125 10 747 56 0 23 0 LINC00173
SE_02_146500179 chr12:116486537-116507710 Sample_02_1465 Ovary CAOV4cis 179 13 609 47 0 13 0 LINC00173
SE_02_108800141 chr12:116487057-116506958 Sample_02_1088 Mammary gland T47D_shCtrl_45min 141 7 575 42 0 13 0 LINC00173
SE_02_123400109 chr12:116487246-116509281 Sample_02_1234 Mammary gland T47D_Full 109 9 626 47 0 20 0 LINC00173
SE_02_109300304 chr12:116488611-116507053 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 304 7 532 40 0 13 0 LINC00173
SE_02_109200215 chr12:116488623-116507163 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 215 7 534 40 0 13 0 LINC00173
SE_02_108900195 chr12:116488643-116506930 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 195 9 532 40 0 13 0 LINC00173
SE_02_081000185 chr12:116488757-116508997 Sample_02_0810 Mammary gland T47D noSerum 185 16 579 45 0 20 0 LINC00173
SE_02_080900292 chr12:116488765-116507272 Sample_02_0809 Mammary gland T47D Serum 292 4 533 40 0 13 0 LINC00173
SE_02_107700305 chr12:116488799-116498712 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 305 5 297 25 0 12 0 LINC00173,MED13L
SE_02_109000303 chr12:116488828-116506985 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 303 8 527 39 0 13 0 LINC00173
SE_02_048000732 chr12:116488867-116540645 Sample_02_0480 Gingival epithelial HGEP 732 16 1501 115 1 67 566 LINC00173,MAP1LC3B2
SE_02_064501352 chr12:116489389-116540301 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 1352 12 1477 111 1 67 566 LINC00173,MAP1LC3B2
SE_02_102900122 chr12:116491530-116554926 Sample_02_1029 Colon HCT116 122 28 1778 131 2 84 566 LINC00173,MAP1LC3B2
SE_02_102600493 chr12:116492078-116528697 Sample_02_1026 Esophagus KYSE200 493 18 1092 76 1 15 0 MAP1LC3B2,LINC00173
SE_02_109100373 chr12:116492276-116506930 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 373 6 423 29 0 1 0 LINC00173
SE_02_087300027 chr12:116492277-116541400 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 27 19 1420 107 1 57 566 LINC00173,MAP1LC3B2
SE_02_050600436 chr12:116492460-116561634 Sample_02_0506 Esophagus TE5_1 436 16 1926 138 2 102 632 MAP1LC3B2,LINC00173
SE_02_101701143 chr12:116492570-116557761 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1143 14 1816 134 2 79 566 LINC00173,MAP1LC3B2
SE_02_051700427 chr12:116492595-116561634 Sample_02_0517 Esophagus TE5 427 14 1924 138 2 102 632 MAP1LC3B2,LINC00173
SE_01_011400082 chr12:116492650-116543073 Sample_01_0114 Colon HCT116_encode 82 14 1451 107 1 58 566 LINC00173,MAP1LC3B2
SE_02_045800052 chr12:116492674-116530453 Sample_02_0458 Colon HCT116 DMSO 52 17 1113 76 1 15 0 MAP1LC3B2,LINC00173
SE_02_143301225 chr12:116492674-116553421 Sample_02_1433 Bone A673 STAG2 null 1225 19 1716 124 2 79 566 LINC00173,MAP1LC3B2
SE_02_124700041 chr12:116492961-116530053 Sample_02_1247 Colon HCT116_IFN-beta_1h 41 9 1090 74 1 15 0 MAP1LC3B2,LINC00173
SE_02_053200223 chr12:116493086-116506996 Sample_02_0532 Mammary gland T47D 223 9 399 27 0 1 0 LINC00173
SE_02_087400079 chr12:116493125-116531374 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 79 16 1132 78 1 15 0 MAP1LC3B2,LINC00173
SE_02_059900081 chr12:116493129-116529957 Sample_02_0599 Colon HCT116_DMSO 81 15 1082 74 1 15 0 MAP1LC3B2,LINC00173
SE_02_049600270 chr12:116493250-116508823 Sample_02_0496 Mammary gland C49R 270 8 431 31 0 8 0 LINC00173
SE_02_052100100 chr12:116494335-116530072 Sample_02_0521 Colon SW480 100 6 1046 68 1 15 0 MAP1LC3B2,LINC00173
SE_02_102700448 chr12:116494351-116540157 Sample_02_1027 Esophagus KYSE180_1 448 20 1324 95 1 51 566 LINC00173,MAP1LC3B2
SE_02_087100150 chr12:116494410-116508826 Sample_02_0871 Colon HCT116_GLIS2.2-DMSO 150 3 399 25 0 8 0 LINC00173
SE_02_107300763 chr12:116496510-116529269 Sample_02_1073 Keratinocyte keratinocytes stem cell 763 7 972 61 1 15 0 MAP1LC3B2,LINC00173
SE_02_061400940 chr12:116496911-116545804 Sample_02_0614 Liposarcoma MLPS_T2 940 14 1386 99 1 62 566 LINC00173,MAP1LC3B2
SE_02_112100918 chr12:116496912-116529106 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 918 11 951 61 1 15 0 MAP1LC3B2,LINC00173
SE_02_103100436 chr12:116499638-116543795 Sample_02_1031 Head and neck SCC1 contol 436 17 1254 91 1 58 566 LINC00173,MAP1LC3B2
SE_02_097100422 chr12:116506089-116562000 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 422 12 1538 112 2 101 632 MAP1LC3B2,LINC00173
SE_02_097000206 chr12:116506548-116562060 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 206 18 1533 114 2 101 632 MAP1LC3B2,LINC00173
SE_02_095800409 chr12:116508110-116561613 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 409 14 1475 107 2 101 632 MAP1LC3B2,LINC00173
SE_02_133000662 chr12:116508503-116562179 Sample_02_1330 Blood AMU-AML1 662 12 1486 108 2 101 632 MAP1LC3B2,LINC00173
SE_02_102500916 chr12:116516658-116542958 Sample_02_1025 Esophagus KYSE150 916 6 738 59 1 50 566 LINC00173,MAP1LC3B2
SE_02_130500320 chr12:116517263-116529860 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 320 8 361 27 1 7 0 MAP1LC3B2,LINC00173
SE_02_113700705 chr12:116518093-116530544 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 705 5 360 28 1 7 0 MAP1LC3B2,LINC00173
SE_02_113801044 chr12:116519814-116530445 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 1044 3 299 22 1 2 0 MAP1LC3B2,LINC00173
SE_02_132001510 chr12:116520746-116552851 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1510 10 853 68 2 66 566 LINC00173,MAP1LC3B2
SE_02_132201321 chr12:116521135-116552648 Sample_02_1322 Connective Tissue HT1080_WT 1321 7 842 65 1 66 566 LINC00173,MAP1LC3B2
SE_02_132100661 chr12:116521172-116552895 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 661 9 844 66 1 66 566 LINC00173,MAP1LC3B2
SE_02_148900277 chr12:116521230-116553226 Sample_02_1489 Bone TC-106 277 9 859 66 1 66 566 LINC00173,MAP1LC3B2
SE_02_146500285 chr12:116521295-116544345 Sample_02_1465 Ovary CAOV4cis 285 8 630 51 0 44 566 LINC00173,MAP1LC3B2
SE_02_099100874 chr12:116521501-116528810 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 874 3 220 17 0 1 0 MAP1LC3B2,LINC00173
SE_02_146400365 chr12:116523885-116545326 Sample_02_1464 Ovary CAOV4 365 10 583 48 0 48 566 LINC00173,MAP1LC3B2
SE_02_048101092 chr12:116524073-116561870 Sample_02_0481 Mammary gland MDA-MB231 1092 9 999 75 1 88 632 MAP1LC3B2,LINC00173
SE_02_141500410 chr12:116524818-116557805 Sample_02_1415 Brain DIPGIV 410 8 864 70 1 65 566 LINC00173,MAP1LC3B2
SE_02_118100940 chr12:116524988-116544714 Sample_02_1181 Brain GBM10 940 7 535 43 0 44 566 LINC00173,MAP1LC3B2
Genomic distribution of SEs associated with LINC00173
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC00173

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)