SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000163635
Gene: ATXN7 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:63863155-64003462 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_138700418 chr3:63885820-63993743 Sample_02_1387 Peripheral blood Mac-1_ALK- 418 48 2894 128 6 249 897 ATXN7,PSMD6,THOC7,THOC7-AS1,PSMD6-AS2
SE_02_139200405 chr3:63893272-63993511 Sample_02_1392 Peripheral blood Mac-2A_ALK- 405 31 2722 118 6 225 897 ATXN7,PSMD6,THOC7,THOC7-AS1,PSMD6-AS2
SE_02_032000461 chr3:63894245-63993524 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 461 14 2699 118 6 225 897 ATXN7,PSMD6,THOC7
SE_02_032100620 chr3:63895141-63993687 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 620 15 2688 119 6 225 897 ATXN7,PSMD6,THOC7
SE_02_142700943 chr3:63895496-63918395 Sample_02_1427 Shoulder fibroblast_343 943 5 594 21 0 79 290 ATXN7,THOC7,THOC7-AS1
SE_01_002400398 chr3:63899912-63993356 Sample_01_0024 Blood CD14-positive-monocyte 398 13 2559 114 6 217 871 ATXN7,PSMD6,THOC7
SE_02_010400679 chr3:63905457-63938829 Sample_02_0104 Blood neutrophils 679 7 890 35 0 95 264 ATXN7,THOC7
SE_01_004600252 chr3:63909911-63919675 Sample_01_0046 Mammary gland MCF-7 252 1 257 8 0 66 264 ATXN7,THOC7
SE_02_073500474 chr3:63909915-63937746 Sample_02_0735 Lymphoma PAR_Mantle cell lymphoma tissue_THZ1 474 8 757 30 0 89 264 ATXN7,THOC7,THOC7-AS1
SE_02_021700030 chr3:63909946-63914567 Sample_02_0217 Mammary gland MCF-7_NS 30 1 127 3 0 62 264 ATXN7,THOC7
SE_02_000200251 chr3:63910076-63919400 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 251 1 248 8 0 66 264 ATXN7,THOC7
SE_02_010100296 chr3:63910170-63996689 Sample_02_0101 Peripheral blood Macrophages_GM-CSF_72h_IFN-y 296 13 2405 111 6 233 1065 ATXN7,PSMD6,THOC7
SE_02_073100336 chr3:63910268-63937734 Sample_02_0731 Lymphoma J4_Mantle cell lymphoma tissue_THZ1 336 6 746 30 0 89 264 ATXN7,THOC7,THOC7-AS1
SE_01_010100033 chr3:63910387-64021441 Sample_01_0101 Pancreas pancreas_54y 33 37 3087 155 8 352 2078 ATXN7,PSMD6,PSMD6-AS2,THOC7,THOC7-AS1,PRICKLE2-AS1
SE_02_073300444 chr3:63910394-63938379 Sample_02_0733 Lymphoma L20_Mantle cell lymphoma tissue_THZ1 444 8 758 30 0 90 264 ATXN7,THOC7,THOC7-AS1
SE_02_073200440 chr3:63910396-63938419 Sample_02_0732 Lymphoma L20_Mantle cell lymphoma tissue_DMSO 440 9 758 30 0 90 264 ATXN7,THOC7,THOC7-AS1
SE_02_073000299 chr3:63910495-63938517 Sample_02_0730 Lymphoma J4_Mantle cell lymphoma tissue_DMSO 299 4 759 30 0 90 264 ATXN7,THOC7,THOC7-AS1
SE_02_003300420 chr3:63910513-63977246 Sample_02_0033 Pancreas pancreatic-islets-F 420 9 1826 85 4 157 385 ATXN7,PSMD6,THOC7
SE_02_009600173 chr3:63910545-63916958 Sample_02_0096 Mammary gland ZR-75-1_1 173 1 189 5 0 63 264 ATXN7,THOC7
SE_02_024600072 chr3:63910547-63915795 Sample_02_0246 Mammary gland MCF-7_estradiol 72 1 153 4 0 62 264 ATXN7,THOC7
SE_01_008500710 chr3:63910660-63977749 Sample_01_0085 Stomach stomach 710 9 1839 85 4 157 385 ATXN7,PSMD6,THOC7
SE_02_072800400 chr3:63910708-63937749 Sample_02_0728 Lymphoma I10_Mantle cell lymphoma tissue_DMSO 400 9 738 29 0 89 264 ATXN7,THOC7
SE_01_008400555 chr3:63910724-63981538 Sample_01_0084 Spleen spleen 555 12 1930 90 4 170 504 ATXN7,PSMD6,THOC7
SE_02_077800063 chr3:63910906-63915323 Sample_02_0778 Mammary gland MCF7_FASR 63 1 123 2 0 62 264 ATXN7,THOC7
SE_02_152900998 chr3:63910910-63939389 Sample_02_1529 Peripheral blood neutrophils_0BC75 998 8 770 30 0 90 264 ATXN7,THOC7
SE_02_157800381 chr3:63911005-63914472 Sample_02_1578 Mammary gland MCF7_DAC+455 381 1 97 2 0 60 264 ATXN7,THOC7
SE_02_072900500 chr3:63911015-63935056 Sample_02_0729 Lymphoma I10_Mantle cell lymphoma tissue_THZ1 500 8 645 27 0 87 264 ATXN7,THOC7
SE_02_062600245 chr3:63911030-63914419 Sample_02_0626 Mammary gland WS8_E2 245 1 95 2 0 60 264 ATXN7,THOC7
SE_02_062500275 chr3:63911059-63914466 Sample_02_0625 Mammary gland WS8_4OHT 275 1 96 2 0 60 264 ATXN7,THOC7
SE_02_062700234 chr3:63911066-63914370 Sample_02_0627 Mammary gland WS8_VEH 234 2 93 2 0 60 264 ATXN7,THOC7
SE_02_107700198 chr3:63911111-63914479 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 198 1 96 2 0 60 264 ATXN7,THOC7
SE_02_107600229 chr3:63911158-63915141 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 229 2 110 2 0 62 264 ATXN7,THOC7
SE_02_027401117 chr3:63911163-63913870 Sample_02_0274 Endometriosis hTERT_KD 1117 1 81 2 0 60 264 ATXN7,THOC7
SE_02_142900435 chr3:63911201-63973114 Sample_02_1429 Blood GM12878_WT 435 23 1694 77 3 157 385 ATXN7,THOC7,PSMD6-AS2
SE_02_062300514 chr3:63911203-63915169 Sample_02_0623 Mammary gland TAMR_E2 514 1 111 2 0 62 264 ATXN7,THOC7
SE_02_158300511 chr3:63911209-63977165 Sample_02_1583 Fetal lung IMR90_empty_GM 511 22 1807 84 4 157 385 ATXN7,PSMD6,THOC7,PSMD6-AS2
SE_00_005500819 chr3:63911224-63935369 Sample_00_0055 Spleen spleen 34y 819 6 649 27 0 87 264 ATXN7,THOC7
SE_02_097400482 chr3:63911240-63913632 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 482 1 72 2 0 60 264 ATXN7,THOC7
SE_02_077700159 chr3:63911248-63919186 Sample_02_0777 Mammary gland MCF7_TAMR 159 2 220 7 0 65 264 ATXN7,THOC7
SE_02_056300166 chr3:63911254-63915372 Sample_02_0563 Mammary gland MCF7L-P_0h 166 3 118 2 0 61 264 ATXN7,THOC7
SE_02_056700088 chr3:63911257-63919006 Sample_02_0567 Mammary gland MCF7L-P_TAMR 88 4 212 7 0 65 264 ATXN7,THOC7
SE_02_092900490 chr3:63911271-63981458 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 490 19 1915 90 4 169 504 ATXN7,PSMD6,THOC7,PSMD6-AS2
SE_02_056600122 chr3:63911295-63915310 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 122 3 115 2 0 61 264 ATXN7,THOC7
SE_02_142601066 chr3:63911326-63918464 Sample_02_1426 Shoulder fibroblast_341 1066 3 200 6 0 63 264 ATXN7,THOC7
SE_02_056800141 chr3:63911332-63915341 Sample_02_0568 Mammary gland MCF7L_E2_4h 141 3 115 2 0 61 264 ATXN7,THOC7
SE_02_093700060 chr3:63911346-63986876 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 60 28 2087 96 5 180 627 ATXN7,PSMD6,THOC7,PSMD6-AS2
SE_02_064601392 chr3:63911364-63913587 Sample_02_0646 Tracheobronchial epithelial HTBE_H1N1_24h 1392 1 67 2 0 59 264 ATXN7,THOC7
SE_02_064400819 chr3:63911371-63914587 Sample_02_0644 Tracheobronchial epithelial HTBE_H1N1_12h 819 2 93 2 0 61 264 ATXN7,THOC7
SE_02_064502037 chr3:63911381-63913503 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2037 1 66 2 0 59 264 ATXN7,THOC7
SE_02_056400136 chr3:63911385-63915309 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 136 2 111 2 0 61 264 ATXN7,THOC7
SE_02_126100460 chr3:63911403-63913465 Sample_02_1261 Bone Im-GCT-3504_G34W_unedited 460 1 66 2 0 59 264 ATXN7,THOC7
SE_02_084500026 chr3:63911418-63913608 Sample_02_0845 Mammary gland MCF-7_DMSO_sgARID1A-2_KO 26 2 67 2 0 59 264 ATXN7,THOC7
SE_02_147000871 chr3:63911428-63919086 Sample_02_1470 Umbilical Vein H441 871 2 214 7 0 65 264 ATXN7,THOC7
SE_02_074500698 chr3:63911473-63923456 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 698 3 317 10 0 77 264 ATXN7,THOC7
SE_02_056500170 chr3:63911474-63915262 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 170 2 109 2 0 61 264 ATXN7,THOC7
SE_02_075000972 chr3:63911488-63935166 Sample_02_0750 Lymphoma Rec-1_GSI 972 11 638 27 0 85 264 ATXN7,THOC7
SE_02_126200813 chr3:63911511-63913260 Sample_02_1262 Bone Im-GCT-3504_G34W 813 1 57 2 0 58 223 ATXN7,THOC7
SE_00_003000453 chr3:63911555-63914492 Sample_00_0030 Pancreas pancreas 453 2 88 1 0 58 264 ATXN7,THOC7
SE_02_048400350 chr3:63911598-63913430 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 350 2 60 1 0 58 264 ATXN7,THOC7
SE_02_115100213 chr3:63911605-63915269 Sample_02_1151 Mammary gland MCF-7_UNTR 213 2 105 1 0 60 264 ATXN7,THOC7
SE_02_103501715 chr3:63911623-63915998 Sample_02_1035 Mammary gland HCC70_Vehicle 1715 3 133 2 0 60 264 ATXN7,THOC7
SE_02_074400898 chr3:63911629-63927917 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 898 4 432 15 0 77 264 ATXN7,THOC7
SE_02_049600072 chr3:63911648-63913515 Sample_02_0496 Mammary gland C49R 72 2 59 1 0 58 264 ATXN7,THOC7
SE_02_084400036 chr3:63911651-63913452 Sample_02_0844 Mammary gland MCF-7_DMSO_sgARID1A-1_KO 36 3 57 1 0 58 264 ATXN7,THOC7
SE_02_131900399 chr3:63911669-63913157 Sample_02_1319 Connective Tissue HT1080_DDIT3 399 1 49 1 0 51 205 ATXN7,THOC7
SE_02_103601642 chr3:63911727-63929586 Sample_02_1036 Mammary gland HCC70_XY018 1642 5 482 18 0 77 264 ATXN7,THOC7
SE_02_048800445 chr3:63911880-63913075 Sample_02_0488 Bone marrow HSCe_74y_CD34+,CD38-,Lineage- 445 1 35 1 0 32 188 ATXN7,THOC7
SE_02_082600919 chr3:63926322-63995540 Sample_02_0826 Stomach gastric tumor 919 19 1952 96 6 136 627 ATXN7,PSMD6,PSMD6-AS2
SE_01_009500054 chr3:63927775-63986632 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 54 12 1642 80 5 102 363 ATXN7,PSMD6,PSMD6-AS2
SE_02_049500073 chr3:63932220-63971388 Sample_02_0495 Islets differentiated hESCs Early LSD1 inhibition PP2 73 9 1074 51 3 78 121 ATXN7,PSMD6-AS2
SE_02_023200391 chr3:63932245-63989527 Sample_02_0232 Tonsil ILC3 391 11 1584 73 5 109 445 ATXN7,PSMD6
SE_02_004600712 chr3:63932412-63968959 Sample_02_0046 Embryo endodermal CyT49_ES_D10 712 10 998 48 3 62 121 ATXN7
SE_02_023300330 chr3:63932475-63980688 Sample_02_0233 Tonsil Th1 330 8 1309 65 4 84 219 ATXN7,PSMD6
SE_02_049400152 chr3:63932627-63971535 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 152 9 1067 51 3 76 121 ATXN7,PSMD6-AS2
SE_02_052500258 chr3:63932661-63971528 Sample_02_0525 Pancreas iPS derived pancreatic precursor cells_Lane1 258 15 1067 51 3 76 121 ATXN7,PSMD6-AS2
SE_02_023100147 chr3:63932754-63985398 Sample_02_0231 Tonsil ILC1 147 10 1448 71 5 99 363 ATXN7,PSMD6
SE_02_006500152 chr3:63933124-63972727 Sample_02_0065 Embryo KO2-Late_G1 152 7 1084 51 3 76 121 ATXN7
SE_02_101701836 chr3:63933188-63976261 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1836 14 1183 56 4 76 121 ATXN7,PSMD6,PSMD6-AS2
SE_02_067200789 chr3:63935010-63979742 Sample_02_0672 Endometrium endometrium cancer_DSG 789 10 1227 62 4 74 121 ATXN7,PSMD6,PSMD6-AS2
SE_02_077600793 chr3:63935977-63973430 Sample_02_0776 Pancreas EndoC-BH1 793 9 1037 50 3 70 121 ATXN7,PSMD6-AS2
SE_02_049300465 chr3:63936148-63970584 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 465 10 954 48 3 56 121 ATXN7,PSMD6-AS2
SE_02_075400545 chr3:63936882-63972862 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 545 8 985 50 3 69 121 ATXN7,PSMD6-AS2
SE_02_052400282 chr3:63937041-63973732 Sample_02_0524 Pancreas iPS derived pancreatic precursor cells_Lane2 282 15 1005 50 3 69 121 ATXN7,PSMD6,PSMD6-AS2
SE_01_007100111 chr3:63937338-63981884 Sample_01_0071 Pancreas body-of-pancreas 111 10 1213 62 4 81 240 ATXN7,PSMD6
SE_02_004000398 chr3:63937486-63976382 Sample_02_0040 Embryo PFG 398 7 1068 52 4 68 121 ATXN7,PSMD6
SE_02_093500548 chr3:63937817-63977187 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 548 12 1078 55 4 68 121 ATXN7,PSMD6,PSMD6-AS2
SE_02_126601008 chr3:63939710-63980106 Sample_02_1266 Bone Im-GCT-4072_G34W-repair_WT_E3 1008 9 1106 59 4 72 156 ATXN7,PSMD6,PSMD6-AS2
SE_02_137801048 chr3:63940015-63979587 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1048 17 1080 57 4 69 121 ATXN7,PSMD6,PSMD6-AS2
SE_01_011501185 chr3:63940032-63982273 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1185 7 1155 60 4 81 281 ATXN7,PSMD6,PSMD6-AS2
SE_02_126500848 chr3:63940103-63980804 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 848 6 1106 59 4 74 230 ATXN7,PSMD6,PSMD6-AS2
SE_02_041800476 chr3:63943646-63960730 Sample_02_0418 Embryo H9_Null+EZH2 476 4 480 22 0 20 46 ATXN7
SE_02_017200868 chr3:63945578-63980094 Sample_02_0172 Lung IMR-90_quiescent 868 5 961 52 4 69 156 ATXN7,PSMD6
SE_02_047401013 chr3:63947558-63979929 Sample_02_0474 Fibroblast umbilical cord Fibroblast 1013 8 907 52 4 67 135 ATXN7,PSMD6,PSMD6-AS2
SE_02_126401130 chr3:63947903-63980306 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1130 9 908 53 4 70 182 ATXN7,PSMD6,PSMD6-AS2
SE_02_006400218 chr3:63948254-63972412 Sample_02_0064 Embryo DN-Early_G1 218 8 689 39 3 63 121 ATXN7
SE_00_000900841 chr3:63950131-63982165 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 841 5 895 51 4 76 269 ATXN7,PSMD6
SE_02_157301274 chr3:63950841-63978967 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 1274 9 793 47 4 63 121 ATXN7,PSMD6,PSMD6-AS2
SE_02_002200363 chr3:63951054-63977850 Sample_02_0022 Blood CD8donorA 363 7 767 46 4 63 121 ATXN7,PSMD6
SE_02_045400737 chr3:63951670-63984106 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 737 10 911 54 4 86 363 ATXN7,PSMD6,PSMD6-AS2
SE_02_108300444 chr3:63953221-63999822 Sample_02_1083 Macula macula 444 14 1336 71 6 141 869 ATXN7,PSMD6,PSMD6-AS2
SE_02_060000462 chr3:63953793-63989526 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 462 6 1026 54 5 88 399 ATXN7,PSMD6,PSMD6-AS2
SE_02_104200515 chr3:63955206-64008765 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 515 14 1495 76 7 205 1454 ATXN7,PSMD6-AS2,PSMD6
SE_02_003900830 chr3:63955237-64009150 Sample_02_0039 Embryo AFG 830 9 1508 78 7 205 1454 ATXN7,PSMD6
SE_01_005100097 chr3:63955774-63973840 Sample_01_0051 Embryo neural-progenitor-cell 97 4 511 31 4 55 75 ATXN7,PSMD6
SE_02_010400832 chr3:63959853-63981847 Sample_02_0104 Blood neutrophils 832 6 609 35 4 57 194 ATXN7,PSMD6
SE_02_108200957 chr3:63959939-63995705 Sample_02_1082 Retina retina 957 15 1032 53 6 106 607 ATXN7,PSMD6,PSMD6-AS2
SE_02_093801156 chr3:63960125-63986294 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1156 7 744 40 5 68 317 ATXN7,PSMD6,PSMD6-AS2
SE_02_084200273 chr3:63960696-63970705 Sample_02_0842 Umbilical cord blood HSPC-derived early erythroid progenitors 273 2 282 18 3 32 75 ATXN7,PSMD6-AS2
SE_00_004800091 chr3:63963705-63978127 Sample_00_0048 Embryo neuronal stem cell originated from H1 91 9 397 21 1 42 75 ATXN7,PSMD6,PSMD6-AS2
SE_02_023400711 chr3:63964571-63983915 Sample_02_0234 Tonsil Th17 711 1 527 28 1 65 317 ATXN7,PSMD6
SE_02_002300249 chr3:63965187-63991717 Sample_02_0023 Blood CD8donorC 249 10 749 31 2 80 561 ATXN7,PSMD6
SE_02_002600131 chr3:63966119-63981218 Sample_02_0026 Blood CD4donorE 131 6 397 20 1 37 194 ATXN7,PSMD6
SE_02_002400494 chr3:63967710-63993214 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 494 7 720 31 3 78 548 ATXN7,PSMD6
SE_00_003000377 chr3:63971125-63982258 Sample_00_0030 Pancreas pancreas 377 7 299 15 1 17 160 ATXN7,PSMD6
Genomic distribution of SEs associated with ATXN7
Genome Browser

The strength of the tissue affected by the gene

Expression of ATXN7

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)