Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_021700035 chr1:113928061-113932565 4504 35 1 84 7 1 65 368 HIPK1,BCL2L15,DCLRE1B,OLFML3,AP4B1
SE_02_021700031 chr1:114508794-114513387 4593 31 1 103 7 1 79 250 TRIM33
SE_02_021700027 chr1:120061580-120070485 8905 27 2 145 12 0 68 202 NOTCH2
SE_02_021700024 chr1:146220930-146229859 8929 24 2 19 4 0 75 184 NOTCH2NL
SE_02_021700012 chr1:181104391-181134317 29926 12 13 824 61 2 154 0 IER5
SE_02_021700044 chr10:8049878-8062045 12167 44 5 407 20 10 227 1339 FLJ45983,GATA3
SE_02_021700036 chr11:118918417-118930337 11920 36 8 285 28 2 189 0 CXCR5,BCL9L,UPK2,FOXR1
SE_02_021700016 chr11:65476865-65500450 23585 16 9 705 77 4 11 334 MALAT1,MIR612,SCYL1
SE_02_021700033 chr13:29905610-29923907 18297 33 6 615 40 6 61 0 LOC440131
SE_02_021700021 chr16:30192376-30210381 18005 21 7 37 2 0 88 2208 SLX1B,SULT1A3,SULT1A4,BOLA2B,SLX1A-SULT1A3,LOC388242,LOC613037,CORO1A
SE_02_021700039 chr16:317235-334864 17629 39 5 745 82 3 0 0 AXIN1,LOC100134368,MRPL28,RGS11,ARHGDIG,TMEM8A,PDIA2
SE_02_021700054 chr16:67396620-67406317 9697 54 4 241 14 0 63 539 ZDHHC1,LRRC36,HSD11B2,TPPP3
SE_02_021700041 chr17:58630315-58633795 3480 41 1 170 21 3 8 38 TEX14
SE_02_021700049 chr17:58658625-58661015 2390 49 2 99 13 1 0 0 TEX14,RAD51C
SE_02_021700032 chr17:59092382-59096316 3934 32 2 67 4 0 1 0 TRIM37,MIR454
SE_02_021700004 chr17:59829558-59861386 31828 4 14 750 67 2 108 358 TUBD1,MIR21,TMEM49,RPS6KB1
SE_02_021700045 chr17:59962469-59965839 3370 45 1 76 6 0 31 254 RNFT1
SE_02_021700011 chr17:60025184-60034122 8938 11 2 36 0 0 0 0 DHX40P1,HEATR6
SE_02_021700042 chr17:60119132-60121116 1984 42 1 1 0 0 0 0 HEATR6,LOC645638,CA4,LOC653653
SE_02_021700022 chr17:60389978-60393804 3826 22 1 88 6 0 35 218 USP32,C17ORF64
SE_02_021700017 chr17:60522278-60527406 5128 17 1 157 17 1 26 193 APPBP2
SE_02_021700018 chr17:60596640-60603573 6933 18 1 186 4 0 52 246 PPM1D
SE_02_021700006 chr17:61343006-61386894 43888 6 7 1277 34 6 217 467 BCAS3,TBX2,C17ORF82
SE_02_021700028 chr2:11482307-11501360 19053 28 5 509 26 0 39 0 GREB1,E2F6
SE_02_021700051 chr2:11530677-11536810 6133 51 4 191 5 0 24 51 GREB1
SE_02_021700048 chr2:237489034-237504656 15622 48 5 571 70 0 6 67 MLPH
SE_02_021700005 chr20:47309415-47331965 22550 5 6 667 3 0 41 505 ZMYND8,LOC100131496
SE_02_021700001 chr20:47345744-47394221 48477 1 7 1344 15 4 152 808 ZMYND8,LOC100131496
SE_02_021700010 chr20:47436734-47456897 20163 10 4 549 22 3 0 0 NCOA3
SE_02_021700019 chr20:47500340-47504669 4329 19 1 89 4 0 17 410 NCOA3
SE_02_021700053 chr20:47671840-47680208 8368 53 1 298 15 0 15 422 SULF2
SE_02_021700014 chr20:47783266-47803929 20663 14 3 603 40 9 74 259 SULF2
SE_02_021700047 chr20:47982338-47993020 10682 47 3 302 16 0 0 0 SULF2
SE_02_021700040 chr20:48793829-48808941 15112 40 2 474 29 3 30 0 PREX1
SE_02_021700034 chr20:48911063-48924122 13059 34 2 367 66 6 41 188 ARFGEF2
SE_02_021700020 chr20:50670139-50681191 11052 20 4 303 28 1 6 0 FAM65C
SE_02_021700002 chr20:50714411-50771228 56817 2 18 1561 127 4 144 595 PARD6B,BCAS4
SE_02_021700008 chr20:50789561-50802645 13084 8 4 354 47 0 16 166 BCAS4
SE_02_021700026 chr20:53620773-53624539 3766 26 2 99 0 0 11 0 ZNF217
SE_02_021700046 chr20:53750565-53755346 4781 46 1 129 2 0 2 0 SUMO1P1
SE_02_021700003 chr20:53772293-53811405 39112 3 8 1190 34 4 0 0 SUMO1P1
SE_02_021700009 chr20:53862594-53879538 16944 9 2 462 5 0 43 152 SUMO1P1
SE_02_021700015 chr20:54121507-54131027 9520 15 2 299 1 3 9 0 CYP24A1
SE_02_021700038 chr20:54207267-54211001 3734 38 1 108 4 1 0 142 PFDN4,CYP24A1
SE_02_021700007 chr20:57161430-57207848 46418 7 4 1530 99 0 95 816 BMP7
SE_02_021700037 chr3:194133731-194142371 8640 37 3 175 3 0 259 492 HES1
SE_02_021700023 chr3:63861103-63865649 4546 23 1 104 7 0 10 301 ATXN7,THOC7,C3ORF49
SE_02_021700030 chr3:63909946-63914567 4621 30 1 127 3 0 62 264 ATXN7,THOC7
SE_02_021700013 chr3:64146707-64154294 7587 13 1 215 2 1 65 261 PRICKLE2,LOC100287879
SE_02_021700052 chr8:101493419-101505283 11864 52 3 323 5 2 49 0 GRHL2
SE_02_021700043 chr8:102804828-102810773 5945 43 5 132 14 0 59 670 AZIN1
SE_02_021700050 chr8:127801078-127811587 10509 50 5 301 8 2 10 0 PVT1,MIR1204
SE_02_021700025 chr8:127845933-127871773 25840 25 4 760 15 2 48 93 PVT1,MIR1204
SE_02_021700029 chr9:129481288-129495532 14244 29 9 396 21 0 33 419 C9ORF50

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM2036927
Input ID: Name:GSM2036933
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb