SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: closest Ensembl ID: ENSG00000139352
Gene: ASCL1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr12:102957674-102960513 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_031800247 chr12:102948666-102980390 Sample_02_0318 Neuroblastoma NB69 247 4 791 19 1 298 456 ASCL1,PAH
SE_02_052300115 chr12:102948672-102972051 Sample_02_0523 Lung NCIH810 115 6 561 19 1 253 456 ASCL1,PAH
SE_02_069500054 chr12:102948763-102963022 Sample_02_0695 Lung NCI-H889_no infection 54 9 341 11 0 198 456 ASCL1,PAH
SE_02_029800258 chr12:102948839-102964112 Sample_02_0298 Neuroblastoma CLB-GA 258 2 363 12 0 199 456 ASCL1,PAH
SE_02_095800127 chr12:102948959-102973306 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 127 6 595 19 1 253 456 ASCL1,PAH
SE_02_128300118 chr12:102949007-102971264 Sample_02_1283 Lung NCI-H2107_p8-15 118 10 526 19 1 252 456 ASCL1,PAH
SE_02_068700230 chr12:102949017-102966862 Sample_02_0687 Lung NCI-H146_no infection 230 9 416 12 0 227 456 ASCL1,PAH
SE_02_097000280 chr12:102949050-102971065 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 280 8 518 19 1 236 456 ASCL1,PAH
SE_02_110900558 chr12:102949052-102966059 Sample_02_1109 Brain SK-N-FI 558 8 398 12 0 211 456 ASCL1,PAH
SE_02_129000096 chr12:102949082-102966514 Sample_02_1290 Lung NCI-H69_p8-15 96 5 402 12 0 221 456 ASCL1,PAH
SE_02_106300453 chr12:102949089-102962845 Sample_02_1063 Brain CLB-GA-control 453 5 324 11 0 195 456 ASCL1,PAH
SE_02_069300157 chr12:102949092-102966114 Sample_02_0693 Lung NCI-H69_no infection 157 6 396 12 0 211 456 ASCL1,PAH
SE_02_144300303 chr12:102949098-102966142 Sample_02_1443 Lung H69M 303 5 396 12 0 211 456 ASCL1,PAH
SE_02_128700072 chr12:102949104-102966594 Sample_02_1287 Lung NCI-H510_p8-15 72 7 403 12 0 223 456 ASCL1,PAH
SE_02_129400014 chr12:102949106-102971170 Sample_02_1294 Lung JHU-LX44-SCLC PDX 14 8 521 19 1 242 456 ASCL1,PAH
SE_02_129200014 chr12:102949107-102966349 Sample_02_1292 Lung JHU-LX110-SCLC PDX 14 7 400 12 0 212 456 ASCL1,PAH
SE_02_068400018 chr12:102949116-102966357 Sample_02_0684 Lung DMS79 18 4 400 12 0 212 456 ASCL1,PAH
SE_02_068600011 chr12:102949118-102965582 Sample_02_0686 Lung NCI-H128_no infection 11 2 385 12 0 210 456 ASCL1,PAH
SE_02_150000291 chr12:102949121-102964077 Sample_02_1500 Brain KELLY_untreat 291 4 350 12 0 196 456 ASCL1,PAH
SE_02_129100046 chr12:102949151-102962655 Sample_02_1291 Lung NCI-H889_p8-15 46 5 320 11 0 194 456 ASCL1,PAH
SE_02_066300705 chr12:102949188-102971246 Sample_02_0663 Thyroid TT 705 6 520 19 1 249 456 ASCL1,PAH
SE_02_106400406 chr12:102949431-102962830 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 406 4 317 11 0 195 456 ASCL1,PAH
SE_02_030400436 chr12:102949773-102963756 Sample_02_0304 Neuroblastoma N206 436 2 331 12 0 196 456 ASCL1,PAH
SE_02_030300087 chr12:102949808-102993250 Sample_02_0303 Neuroblastoma LAN1 87 6 1093 20 2 306 456 ASCL1,PAH
SE_02_069000026 chr12:102949891-102966155 Sample_02_0690 Lung NCI-H510A_no infection 26 11 380 12 0 211 456 ASCL1,PAH
SE_02_025200338 chr12:102950032-102964534 Sample_02_0252 Neuroblastoma IMR5-75-shMYCN-MYCN_high 338 2 342 12 0 196 456 ASCL1,PAH
SE_02_118700595 chr12:102950286-102967264 Sample_02_1187 Brain GBM16 595 4 398 12 0 226 456 ASCL1,PAH
SE_02_027600491 chr12:102950342-102962513 Sample_02_0276 Retina FW15 491 3 294 11 0 194 456 ASCL1,PAH
SE_02_129500131 chr12:102950676-102959797 Sample_02_1295 Lung JHU-LX48-SCLC PDX 131 3 228 7 0 118 384 ASCL1,PAH
SE_02_121000414 chr12:102950724-102966949 Sample_02_1210 Brain GBM17 414 7 375 11 0 208 456 ASCL1,PAH
SE_02_095500085 chr12:102951457-102967430 Sample_02_0955 Brain IDH1_2469 85 9 362 9 1 208 456 ASCL1,PAH
SE_02_118900503 chr12:102951848-102966808 Sample_02_1189 Brain GBM22 503 5 336 9 0 204 456 ASCL1,PAH
SE_02_031500104 chr12:102952543-102992662 Sample_02_0315 Neuroblastoma TR14 104 5 1004 17 2 264 456 ASCL1,PAH
SE_02_095600772 chr12:102952960-102967410 Sample_02_0956 Brain IDH1_2658 772 6 329 9 1 173 456 ASCL1,PAH
SE_02_031300184 chr12:102953175-102964251 Sample_02_0313 Neuroblastoma SK-N-DZ 184 2 256 9 0 143 456 ASCL1,PAH
SE_02_096200318 chr12:102953980-102973932 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 318 7 496 16 1 197 456 ASCL1,PAH
SE_02_097100630 chr12:102955974-102967044 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 630 5 256 7 0 168 456 ASCL1,PAH
SE_02_117600387 chr12:102956088-102966963 Sample_02_1176 Brain GBM04 387 3 245 6 0 168 456 ASCL1,PAH
SE_02_096900699 chr12:102956149-102967149 Sample_02_0969 Brain H3.3K27M_PL637 699 5 245 6 0 167 456 ASCL1,PAH
SE_02_097600288 chr12:102956171-102966492 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 288 2 225 6 0 161 456 ASCL1,PAH
SE_02_095900201 chr12:102956206-102966054 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 201 3 217 6 0 152 456 ASCL1,PAH
SE_02_117900234 chr12:102956206-102967202 Sample_02_1179 Brain GBM08 234 2 244 6 0 167 456 ASCL1,PAH
SE_02_119300663 chr12:102956230-102967185 Sample_02_1193 Brain GBM27 663 3 242 6 0 167 456 ASCL1,PAH
SE_02_085400713 chr12:102956321-102966397 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 713 2 217 6 0 155 456 ASCL1,PAH
SE_02_119800922 chr12:102956480-102967039 Sample_02_1198 Brain GBM34 922 6 234 6 0 162 456 ASCL1,PAH
SE_02_030900245 chr12:102956527-102963865 Sample_02_0309 Neuroblastoma SJNB6 245 1 159 6 0 129 456 ASCL1,PAH
SE_02_121200621 chr12:102956552-102967046 Sample_02_1212 Brain GBM30 621 4 233 6 0 156 456 ASCL1,PAH
SE_02_085700434 chr12:102957117-102967455 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 434 2 225 6 1 157 456 ASCL1,PAH
SE_02_097800467 chr12:102957533-102966399 Sample_02_0978 Brain 2168_IDH1 467 3 189 6 0 137 436 ASCL1,PAH
SE_02_079400167 chr12:102957588-102967109 Sample_02_0794 Brain 1552 167 3 207 6 0 147 417 ASCL1,PAH
SE_02_093200574 chr12:102957592-102980043 Sample_02_0932 Embryo H9 WT_1 574 6 556 13 1 215 414 ASCL1,PAH
SE_02_096100162 chr12:102957593-102966165 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 162 3 182 6 0 131 414 ASCL1,PAH
SE_02_080100545 chr12:102957727-102965850 Sample_02_0801 Brain 2235 545 3 176 6 0 115 383 ASCL1,PAH
SE_02_080000186 chr12:102960516-102966063 Sample_02_0800 Brain 3679 186 3 114 4 0 66 17 ASCL1,PAH
SE_02_093400679 chr12:102960704-102979668 Sample_02_0934 Embryo H7-WT 679 5 477 11 1 150 0 ASCL1,PAH
SE_02_030300054 chr12:103007733-103054216 Sample_02_0303 Neuroblastoma LAN1 54 8 1282 18 0 165 0 ASCL1
SE_02_031300158 chr12:103008379-103052182 Sample_02_0313 Neuroblastoma SK-N-DZ 158 5 1207 13 0 165 0 ASCL1
SE_02_031400648 chr12:103008380-103052795 Sample_02_0314 Neuroblastoma SK-N-FI 648 5 1220 14 0 165 0 ASCL1
SE_02_029800369 chr12:103008391-103028300 Sample_02_0298 Neuroblastoma CLB-GA 369 2 526 3 0 96 0 ASCL1
SE_02_150000434 chr12:103008589-103028268 Sample_02_1500 Brain KELLY_untreat 434 4 518 3 0 96 0 ASCL1
SE_02_031500232 chr12:103009535-103033474 Sample_02_0315 Neuroblastoma TR14 232 4 642 5 0 128 0 ASCL1
SE_02_106300490 chr12:103010053-103015025 Sample_02_1063 Brain CLB-GA-control 490 2 122 1 0 82 0 ASCL1
SE_02_106400424 chr12:103010386-103026799 Sample_02_1064 Brain CLB-GA-Dinaciclib_8h 424 3 433 2 0 90 0 ASCL1
SE_02_030300091 chr12:103093260-103144844 Sample_02_0303 Neuroblastoma LAN1 91 7 1347 49 3 129 0 ASCL1
SE_02_031500407 chr12:103095111-103113044 Sample_02_0315 Neuroblastoma TR14 407 4 476 16 1 40 0 ASCL1
SE_02_032100446 chr12:103101174-103118704 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 446 2 475 13 2 29 0 ASCL1
SE_02_032000284 chr12:103101324-103118754 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 284 3 477 13 2 28 0 ASCL1
Genomic distribution of SEs associated with ASCL1
Genome Browser

The strength of the tissue affected by the gene

Expression of ASCL1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)