SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: WHSC1 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077500072 chr4:1726743-1835465 Sample_02_0775 Pancreas EndoC-BH1_SE 72 45 3949 339 4 521 5536 TACC3,LETM1,FGFR3,WHSC1,SLBP,FAM53A,TMEM129
SE_02_085300195 chr4:1743845-1827151 Sample_02_0853 Mammary gland MCF7L-TamR 195 31 3054 211 0 502 3769 TACC3,LETM1,FGFR3,WHSC1,SLBP,TMEM129
SE_02_115100206 chr4:1744545-1829265 Sample_02_1151 Mammary gland MCF-7_UNTR 206 42 3045 206 0 502 3723 TACC3,LETM1,FGFR3,WHSC1,SLBP,TMEM129
SE_02_118400101 chr4:1746896-1831706 Sample_02_1184 Brain GBM13 101 29 3002 193 0 499 3552 LETM1,FGFR3,TACC3,WHSC1,SLBP,TMEM129
SE_02_107000039 chr4:1771585-1862902 Sample_02_1070 Blood SupT1_WT 39 21 3091 128 0 394 4592 LETM1,FGFR3,WHSC1
SE_02_021600123 chr4:1777132-1834885 Sample_02_0216 Skin NHEK_scramble 123 11 2076 93 0 323 3983 LETM1,FGFR3,WHSC1
SE_02_012800093 chr4:1809419-1876621 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 93 17 1955 47 0 101 2510 WHSC1,LETM1,FGFR3
SE_02_003400047 chr4:1809550-1874515 Sample_02_0034 Peripheral blood CUTLL1_GSI 47 15 1898 46 0 101 2510 WHSC1,LETM1,FGFR3
SE_02_104801536 chr4:1809941-1834079 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1536 5 710 17 0 34 1564 LETM1,FGFR3,WHSC1
SE_02_046500112 chr4:1810064-1887682 Sample_02_0465 Adipose subcutaneous adipocytes 112 28 2243 58 0 108 2510 WHSC1,LETM1,FGFR3
SE_02_003500076 chr4:1825326-1874677 Sample_02_0035 Peripheral blood CUTLL1_GSI_wash 76 10 1407 38 0 80 1316 WHSC1,LETM1,FGFR3
SE_02_024700170 chr4:1825962-1875460 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 170 9 1406 38 0 76 1228 WHSC1,LETM1,FGFR3
SE_02_108300351 chr4:1826510-1887771 Sample_02_1083 Macula macula 351 14 1731 48 0 82 1228 WHSC1,LETM1,FGFR3
SE_02_107100167 chr4:1826807-1862927 Sample_02_1071 Blood Jurkat_WT 167 12 1032 32 0 47 1040 LETM1,WHSC1,FGFR3
SE_02_046601044 chr4:1827896-1862714 Sample_02_0466 Adipose visceral adipocytes 1044 16 992 32 0 47 1040 LETM1,WHSC1,FGFR3
SE_02_022600203 chr4:1829141-1873238 Sample_02_0226 Blood KOPTK1 203 7 1279 36 0 71 1228 WHSC1,LETM1,FGFR3
SE_02_022500174 chr4:1829267-1874795 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 174 6 1320 37 0 75 1228 WHSC1,LETM1,FGFR3
SE_02_034800478 chr4:1829278-1844389 Sample_02_0348 Peripheral blood CUTLL1_wild-type 478 1 454 15 0 32 756 LETM1,WHSC1,FGFR3
SE_00_004500188 chr4:1829319-1840409 Sample_00_0045 Thymus thymus 188 1 312 13 0 17 607 LETM1,FGFR3,WHSC1,FA53A,LET1,SLBP,TACC3,TE129
SE_02_063900037 chr4:1829365-1863115 Sample_02_0639 Blood T-ALL PDX 37 8 995 31 0 47 1040 LETM1,WHSC1,FGFR3
SE_02_076300859 chr4:1833453-1873875 Sample_02_0763 Podocyte podocyte_DEX 859 5 1175 30 0 66 1077 WHSC1,LETM1,FGFR3
SE_00_003500244 chr4:1839020-1887778 Sample_00_0035 Sigmoid colon sigmoid-colon 244 13 1401 36 0 65 685 WHSC1,LETM1,FGFR3
SE_00_005600631 chr4:1839117-1888157 Sample_00_0056 Sigmoid colon sigmoid colon 3y 631 19 1409 36 0 65 682 WHSC1,LETM1,FGFR3
SE_02_076500341 chr4:1839357-1874459 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 341 10 1030 24 0 58 645 WHSC1,LETM1,FGFR3
SE_04_000100265 chr4:1841992-1889266 Sample_04_0001 Blood heat shocked K562 265 9 1344 34 0 50 472 WHSC1,LETM1,FGFR3
SE_02_139100391 chr4:1846399-1880780 Sample_02_1391 Peripheral blood FE-PD_ALK- 391 7 955 26 0 49 472 WHSC1,LETM1
SE_02_077500451 chr4:1848245-1889242 Sample_02_0775 Pancreas EndoC-BH1_SE 451 18 1145 30 0 50 472 WHSC1,LETM1
SE_00_002001412 chr4:1849753-1874957 Sample_00_0020 Large intestine large-intestine_108d 1412 5 710 15 0 42 420 WHSC1,LETM1
SE_02_040400340 chr4:1850962-1873577 Sample_02_0404 Mammary gland ZR-75-1_2 340 4 631 13 0 41 420 WHSC1,LETM1
SE_02_043100356 chr4:1850995-1885982 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 356 9 979 25 0 49 420 WHSC1,LETM1
SE_02_039600499 chr4:1851050-1879074 Sample_02_0396 Skin NHEK-D 499 7 774 18 0 46 420 WHSC1,LETM1
SE_02_085200422 chr4:1851203-1871023 Sample_02_0852 Mammary gland MCF7L-P 422 5 583 12 0 23 232 LETM1,WHSC1
SE_02_115900424 chr4:1851203-1871023 Sample_02_1159 Mammary gland MCF7 424 5 583 12 0 23 232 LETM1,WHSC1
SE_02_125300865 chr4:1851555-1874248 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 865 6 640 13 0 41 420 WHSC1,LETM1
SE_02_104603083 chr4:1851649-1866952 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3083 9 459 12 0 22 232 LETM1,WHSC1
SE_02_104801693 chr4:1851851-1865550 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 1693 8 416 12 0 22 232 LETM1,WHSC1
SE_02_147600531 chr4:1852097-1874051 Sample_02_1476 Bone EW-1 531 5 623 12 0 40 420 WHSC1,LETM1
SE_04_000200420 chr4:1852485-1887527 Sample_04_0002 Blood cold shocked K562 420 6 978 24 0 48 420 WHSC1,LETM1
SE_02_109900216 chr4:1852546-1887503 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 216 13 975 24 0 48 420 WHSC1,LETM1
SE_02_113000354 chr4:1852732-1885781 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 354 7 921 24 0 48 420 WHSC1,LETM1
SE_02_054500476 chr4:1852771-1886904 Sample_02_0545 Bone marrow K562 WT 476 10 956 24 0 48 420 WHSC1,LETM1
SE_02_103500218 chr4:1852958-1872434 Sample_02_1035 Mammary gland HCC70_Vehicle 218 3 546 12 0 32 420 WHSC1,LETM1
SE_02_098700326 chr4:1852983-1887570 Sample_02_0987 Blood K562_Control_1 326 10 963 24 0 48 420 WHSC1,LETM1
SE_02_001900543 chr4:1853047-1877857 Sample_02_0019 Embryo Neural crest cells 543 5 682 13 0 43 420 WHSC1,LETM1
SE_02_111600233 chr4:1853070-1887578 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 233 13 958 24 0 48 420 WHSC1,LETM1
SE_02_115200404 chr4:1853119-1899173 Sample_02_1152 Lymphoma RL_WT_gRNA1 404 6 1315 34 0 48 558 WHSC1,LETM1
SE_02_103000611 chr4:1854313-1870988 Sample_02_1030 Colon DKO 611 5 488 10 0 22 232 LETM1,WHSC1
SE_02_032300352 chr4:1854380-1875649 Sample_02_0323 Colon RKO 352 2 586 12 0 41 420 WHSC1,LETM1
SE_02_017900303 chr4:1854405-1879216 Sample_02_0179 Urinary bladder T24 303 4 674 16 0 45 420 WHSC1,LETM1
SE_02_122300122 chr4:1855001-1885632 Sample_02_1223 Bone marrow KMS28BM 122 9 843 23 0 48 420 WHSC1,LETM1
SE_02_122100387 chr4:1855454-1869250 Sample_02_1221 Bone marrow KMS11 387 9 403 10 0 22 232 LETM1,WHSC1
SE_00_003601444 chr4:1856267-1874863 Sample_00_0036 Small intestine small-intestine_108days 1444 7 512 11 0 28 230 WHSC1,LETM1
SE_02_147900379 chr4:1857820-1883668 Sample_02_1479 Bone EW-7 379 7 697 19 0 35 188 WHSC1,LETM1
SE_02_093400501 chr4:1862432-1866702 Sample_02_0934 Embryo H7-WT 501 4 150 3 0 9 0 WHSC1,LETM1
SE_02_049400909 chr4:1864005-1874271 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 909 2 264 1 0 28 188 WHSC1,LETM1
SE_02_068700983 chr4:1864202-1874320 Sample_02_0687 Lung NCI-H146_no infection 983 6 260 1 0 28 188 WHSC1,LETM1
SE_02_105100722 chr4:1866555-1874697 Sample_02_1051 Esophagus Eso26 722 5 203 2 0 19 188 WHSC1,LETM1
SE_02_088400999 chr4:1866586-1883174 Sample_02_0884 Colon LoVo 999 6 418 11 0 26 188 WHSC1,LETM1
SE_02_138800844 chr4:1866708-1877845 Sample_02_1388 Peripheral blood JB6_ALK+ 844 7 273 2 0 21 188 WHSC1,LETM1
SE_02_047700689 chr4:1867467-1887695 Sample_02_0477 Colon intestinal epithelial organoids_139a 689 10 528 13 0 26 188 WHSC1,LETM1
SE_01_010900816 chr4:1867574-1891106 Sample_01_0109 Colon transverse colon_54y 816 9 609 15 0 26 188 WHSC1,LETM1
SE_02_047800726 chr4:1867622-1887628 Sample_02_0478 Colon normal colon mucosa 726 13 524 13 0 26 188 WHSC1,LETM1
SE_02_136500791 chr4:1867663-1881223 Sample_02_1365 Pancreas AsPC1-untreated 791 4 328 7 0 26 188 WHSC1,LETM1
SE_02_080800888 chr4:1867754-1897175 Sample_02_0808 Ovary RMG1_ARID1A KO 888 26 798 21 0 26 317 WHSC1,LETM1
SE_01_009900475 chr4:1867757-1887657 Sample_01_0099 Colon transverse colon 475 9 519 13 0 26 188 WHSC1,LETM1
SE_02_067401234 chr4:1869086-1873936 Sample_02_0674 Endometrium E1_FA 1234 2 107 1 0 18 188 WHSC1,LETM1
SE_02_122700930 chr4:1869308-1874126 Sample_02_1227 Bone marrow U266 930 2 109 1 0 18 188 WHSC1,LETM1
SE_02_034800492 chr4:1869435-1874771 Sample_02_0348 Peripheral blood CUTLL1_wild-type 492 1 119 2 0 19 188 WHSC1,LETM1
SE_02_034900393 chr4:1869586-1874341 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 393 1 105 1 0 19 188 WHSC1,LETM1
SE_02_115500354 chr4:1869629-1887854 Sample_02_1155 Lymphoma RL_R1446C_gRNA1_KDAC005 354 4 472 13 0 26 188 WHSC1,LETM1
SE_02_058400242 chr4:1869708-1883124 Sample_02_0584 Lung H1299 WT 242 8 326 11 0 26 188 WHSC1,LETM1
SE_02_027400653 chr4:1869826-1874400 Sample_02_0274 Endometriosis hTERT_KD 653 1 100 1 0 19 188 WHSC1,LETM1
SE_02_058001036 chr4:1869961-1890049 Sample_02_0580 Blood HEL_sgSIK3e4 1036 9 513 14 0 26 188 WHSC1,LETM1
SE_02_044800943 chr4:1870081-1873601 Sample_02_0448 Bone MNNG 943 1 70 1 0 18 188 WHSC1,LETM1
SE_02_132201153 chr4:1871339-1873624 Sample_02_1322 Connective Tissue HT1080_WT 1153 1 46 1 0 18 143 WHSC1,LETM1
SE_02_132001100 chr4:1871366-1874073 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 1100 1 60 1 0 18 128 WHSC1,LETM1
SE_02_117000153 chr4:1873299-1887131 Sample_02_1170 Blood HEL92.1.7 153 10 387 12 0 11 0 WHSC1,LETM1
Genomic distribution of SEs associated with WHSC1
Genome Browser

The strength of the tissue affected by the gene

Expression of WHSC1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)