Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_117000121 chr1:107878182-107901116 22934 121 6 605 34 0 33 0 VAV3,MIR7852
SE_02_117000179 chr1:111658699-111672239 13540 179 9 336 36 2 23 0 RAP1A
SE_02_117000178 chr1:120008440-120026794 18354 178 7 364 22 0 103 0 NOTCH2
SE_02_117000154 chr1:120767439-120784690 17251 154 8 0 4 0 0 0 RNVU1-19
SE_02_117000100 chr1:12434578-12453876 19298 100 13 434 6 0 47 0 VPS13D,SNORA59A
SE_02_117000156 chr1:146168479-146185409 16930 156 5 53 7 0 78 0 NOTCH2NL,NBPF10
SE_02_117000172 chr1:148618879-148636215 17336 172 7 0 2 0 0 0 NBPF14
SE_02_117000110 chr1:160559058-160582092 23034 110 9 694 65 1 35 107 CD84,SLAMF6
SE_02_117000044 chr1:164692120-164749423 57303 44 19 1529 91 7 459 0 PBX1,LOC100505795
SE_02_117000128 chr1:170041121-170072414 31293 128 13 835 120 2 11 277 KIFAP3
SE_02_117000079 chr1:179017639-179048671 31032 79 17 805 102 4 112 296 FAM20B,TOR3A
SE_02_117000103 chr1:207624806-207651299 26493 103 15 746 104 10 26 383 CR1L,CR1
SE_02_117000165 chr1:246569771-246583667 13896 165 9 482 18 0 20 0 CNST,LOC255654,TFB2M
SE_02_117000155 chr1:25265888-25281481 15593 155 7 416 47 0 14 103 RHD,SYF2,RSRP1
SE_02_117000077 chr1:40053789-40065810 12021 77 7 287 46 1 55 229 CAP1,PPT1
SE_02_117000085 chr1:47227076-47243171 16095 85 12 419 28 9 96 406 TAL1,LINC00853,PDZK1IP1
SE_02_117000122 chr1:50775091-50801672 26581 122 17 587 31 0 19 63 FAF1
SE_02_117000137 chr1:50969680-50982366 12686 137 10 263 11 1 143 264 CDKN2C,FAF1
SE_02_117000164 chr1:51423828-51436066 12238 164 6 295 26 0 11 0 EPS15
SE_02_117000062 chr1:55179557-55207714 28157 62 16 756 28 4 15 0 USP24,MIR4422,LOC100507634
SE_02_117000123 chr1:55317705-55348474 30769 123 11 935 18 11 42 0 MIR4422
SE_02_117000055 chr1:65215883-65238066 22183 55 9 540 38 3 35 714 AK4,DNAJC6
SE_02_117000016 chr1:65254997-65296370 41373 16 23 925 71 2 94 254 DNAJC6
SE_02_117000053 chr1:65410117-65430497 20380 53 7 491 42 9 98 704 LEPR,LEPROT,DNAJC6
SE_02_117000109 chr1:66749638-66768292 18654 109 8 493 33 2 26 153 SGIP1,TCTEX1D1,INSL5
SE_02_117000161 chr1:66926597-66944573 17976 161 7 424 39 2 71 219 MIER1,WDR78
SE_02_117000117 chr1:67731744-67759775 28031 117 11 758 28 3 64 0 GNG12,GADD45A
SE_02_117000057 chr1:69480565-69507587 27022 57 17 805 65 4 40 0 LRRC7
SE_02_117000008 chr1:69520196-69587152 66956 8 25 1684 180 7 163 390 LRRC7
SE_02_117000050 chr1:89526711-89552361 25650 50 17 645 76 2 52 80 LRRC8B
SE_02_117000020 chr1:89873454-89911417 37963 20 19 999 34 4 82 0 LRRC8D
SE_02_117000167 chr10:11166540-11180111 13571 167 15 418 20 8 41 0 CELF2
SE_02_117000176 chr10:117406986-117418815 11829 176 7 337 16 2 32 0 PDZD8
SE_02_117000009 chr10:17410005-17458160 48155 9 29 1336 164 3 123 310 ST8SIA6,ST8SIA6-AS1
SE_02_117000005 chr10:17645313-17687128 41815 5 27 1340 151 0 20 81 STAM,HACD1,STAM-AS1
SE_02_117000088 chr10:50549461-50579687 30226 88 15 801 54 2 73 0 SGMS1,SGMS1-AS1
SE_02_117000086 chr10:61752831-61780938 28107 86 14 694 40 4 154 137 C10ORF107
SE_02_117000063 chr10:87300761-87345640 44879 63 6 838 57 1 0 652 LOC439994,NUTM2A-AS1,NUTM2D
SE_02_117000107 chr11:110068811-110089741 20930 107 15 547 25 2 45 0 ZC3H12C
SE_02_117000023 chr11:122713926-122757648 43722 23 19 1276 86 6 117 48 UBASH3B
SE_02_117000186 chr11:128189159-128197518 8359 186 5 244 10 0 6 0 ETS1
SE_02_117000021 chr11:128261762-128293102 31340 21 18 784 2 7 58 0 ETS1
SE_02_117000083 chr11:128610678-128630993 20315 83 9 625 5 5 68 0 ETS1
SE_02_117000041 chr11:128699145-128720331 21186 41 15 584 9 4 163 0 FLI1,SENCR
SE_02_117000125 chr11:128830850-128845317 14467 125 6 420 34 2 108 330 KCNJ1,KCNJ5
SE_02_117000042 chr11:132255310-132291070 35760 42 7 1050 9 4 179 0 NTM-IT,NTM
SE_02_117000072 chr11:5272992-5299835 26843 72 21 842 45 5 47 35 OR51B2,HBG1,HBD,HBBP1,BGLT3,HBB,OR51B4,HBG2,HBE1
SE_02_117000183 chr11:71702039-71713678 11639 183 7 517 69 0 0 0 FAM86C1
SE_02_117000031 chr11:86134489-86176900 42411 31 24 1241 83 15 148 0 PICALM
SE_02_117000145 chr12:104459878-104478313 18435 145 12 454 20 4 33 0 CHST11
SE_02_117000054 chr12:108685848-108702212 16364 54 10 398 36 4 56 53 CORO1C
SE_02_117000175 chr12:119664499-119673403 8904 175 4 220 14 1 36 242 PRKAB1,MIR1178
SE_02_117000087 chr12:1303903-1343202 39299 87 11 1211 69 1 83 0 ERC1,LINC00942
SE_02_117000033 chr12:20371498-20417913 46415 33 27 1297 7 26 113 0 PDE3A
SE_02_117000013 chr12:42403108-42445566 42458 13 24 1181 136 4 31 189 PPHLN1,PRICKLE1
SE_02_117000051 chr12:68364350-68395348 30998 51 18 800 15 3 83 0 MDM1
SE_02_117000060 chr12:76530652-76569801 39149 60 14 915 68 3 98 287 OSBPL8
SE_02_117000166 chr13:101529972-101556359 26387 166 9 799 87 1 31 0 ITGBL1
SE_02_117000065 chr13:95226620-95251597 24977 65 14 695 109 4 49 166 ABCC4
SE_02_117000080 chr13:95268130-95288461 20331 80 15 575 62 3 18 54 ABCC4
SE_02_117000159 chr14:71934780-71949237 14457 159 12 394 25 0 17 0 RGS6
SE_02_117000177 chr14:81421715-81435504 13789 177 8 411 33 0 48 80 STON2,LOC100506700
SE_02_117000078 chr15:65802907-65840615 37708 78 9 892 61 2 92 0 DENND4A,RAB11A
SE_02_117000132 chr15:81084962-81108386 23424 132 11 603 38 4 71 80 C15ORF26
SE_02_117000038 chr15:89065815-89098841 33026 38 25 942 78 4 84 237 ABHD2
SE_02_117000105 chr17:27457584-27477043 19459 105 12 477 40 0 50 81 KSR1,TBC1D3P5
SE_02_117000146 chr17:60361236-60389801 28565 146 10 638 36 0 35 0 USP32,C17ORF64
SE_02_117000140 chr17:78258064-78275654 17590 140 8 583 26 0 0 1061 LOC100996291,TMEM235,BIRC5
SE_02_117000130 chr18:8912234-8922482 10248 130 5 360 10 1 13 0 NDUFV2
SE_02_117000040 chr19:28530407-28562275 31868 40 18 886 49 9 14 0 LOC100420587,LINC00906
SE_02_117000070 chr19:28602747-28612964 10217 70 5 374 4 1 0 0 LOC100420587,LINC00906
SE_02_117000150 chr2:108636608-108652464 15856 150 5 447 41 0 5 0 LIMS1
SE_02_117000027 chr2:111405691-111460490 54799 27 24 927 26 1 200 77 MIR4435-2HG
SE_02_117000144 chr2:112811240-112839157 27917 144 13 649 53 8 88 540 IL1B,CKAP2L,IL1A
SE_02_117000115 chr2:126636160-126677460 41300 115 13 1269 65 5 36 193 GYPC
SE_02_117000185 chr2:13683708-13703064 19356 185 8 587 1 2 31 0 LOC100506474
SE_02_117000102 chr2:144219851-144241529 21678 102 13 507 6 1 86 64 GTDC1
SE_02_117000098 chr2:144368432-144387198 18766 98 7 431 2 1 178 247 ZEB2,GTDC1
SE_02_117000093 chr2:144429221-144459260 30039 93 10 641 19 13 483 82 ZEB2,ZEB2-AS1
SE_02_117000116 chr2:144578979-144597287 18308 116 10 396 2 1 293 0 LINC01412
SE_02_117000141 chr2:15554226-15560690 6464 141 3 162 17 0 12 41 NBAS,DDX1
SE_02_117000092 chr2:170006188-170021680 15492 92 7 357 42 0 69 119 UBR3,MYO3B
SE_02_117000056 chr2:170037144-170055043 17899 56 12 415 48 0 7 35 UBR3,MYO3B
SE_02_117000168 chr2:170138898-170157469 18571 168 10 517 48 1 40 182 MYO3B
SE_02_117000006 chr2:170204941-170266821 61880 6 28 1721 60 7 210 197 MYO3B
SE_02_117000073 chr2:170340501-170369279 28778 73 12 837 33 4 80 19 LOC101929753,MYO3B
SE_02_117000157 chr2:17121311-17136235 14924 157 13 393 16 3 9 70 RAD51AP2
SE_02_117000024 chr2:181124874-181153813 28939 24 18 725 31 2 71 0 LOC101927156
SE_02_117000011 chr2:181362189-181396960 34771 11 21 918 45 0 186 43 LOC101927156,MIR4437
SE_02_117000026 chr2:181438806-181465910 27104 26 12 788 39 6 69 372 ITGA4
SE_02_117000126 chr2:181780022-181812304 32282 126 11 892 15 0 81 0 SSFA2
SE_02_117000131 chr2:190182283-190194335 12052 131 4 313 19 0 5 0 C2ORF88
SE_02_117000171 chr2:217077192-217108449 31257 171 13 917 6 6 42 0 LOC101928327
SE_02_117000158 chr2:217146207-217162518 16311 158 14 464 2 0 53 0 LOC101928327
SE_02_117000114 chr2:24336424-24355631 19207 114 12 451 36 0 3 0 ITSN2
SE_02_117000028 chr2:68287357-68326205 38848 28 23 1022 58 2 80 861 CNRIP1,PLEK,PPP3R1
SE_02_117000032 chr2:68351223-68378799 27576 32 19 811 114 3 15 90 PLEK,CNRIP1
SE_02_117000138 chr2:68758605-68778256 19651 138 10 484 40 1 37 234 ARHGAP25
SE_02_117000143 chr2:69768052-69800603 32551 143 12 897 116 2 20 679 ANXA4,GMCL1
SE_02_117000094 chr2:87496370-87518031 21661 94 12 322 12 0 112 0 LINC00152
SE_02_117000124 chr2:8964344-8984541 20197 124 12 483 18 0 14 0 MBOAT2
SE_02_117000047 chr20:31662823-31716567 53744 47 13 1195 84 8 229 525 BCL2L1,TPX2,ABALON,COX4I2
SE_02_117000184 chr20:37701234-37714497 13263 184 9 387 20 1 55 0 CTNNBL1,LOC100287792
SE_02_117000025 chr21:14519439-14555971 36532 25 24 1182 50 10 111 73 SAMSN1,SAMSN1-AS1
SE_02_117000010 chr21:14576689-14615355 38666 10 14 1217 4 2 119 425 SAMSN1-AS1,LOC388813,SAMSN1
SE_02_117000004 chr21:14736553-14773298 36745 4 13 1165 73 3 58 0 LOC388813
SE_02_117000160 chr21:15731417-15753664 22247 160 12 570 33 0 33 0 USP25
SE_02_117000173 chr21:24270390-24280918 10528 173 8 298 3 0 10 0 LOC101927869
SE_02_117000064 chr21:24707678-24723601 15923 64 7 511 9 6 19 0 LOC339622
SE_02_117000096 chr21:29333794-29358363 24569 96 5 625 42 5 27 380 BACH1,BACH1-IT2
SE_02_117000022 chr21:29639379-29664592 25213 22 11 719 26 8 91 163 GRIK1,GRIK1-AS2
SE_02_117000019 chr21:34878365-34912137 33772 19 16 862 5 5 164 433 RUNX1
SE_02_117000015 chr21:34993837-35029471 35634 15 19 1021 14 3 92 0 RUNX1,RUNX1-IT1
SE_02_117000034 chr21:37354863-37378179 23316 34 13 648 65 3 32 159 DYRK1A
SE_02_117000036 chr3:108087880-108134787 46907 36 20 1277 100 5 229 160 LINC01215,CD47
SE_02_117000082 chr3:118932314-118957555 25241 82 14 709 45 1 41 241 IGSF11,IGSF11-AS1
SE_02_117000187 chr3:124639320-124663498 24178 187 11 684 159 5 79 469 KALRN
SE_02_117000097 chr3:132293901-132306379 12478 97 8 455 58 2 0 0 ACPP
SE_02_117000181 chr3:133873644-133893783 20139 181 9 561 47 2 34 91 RAB6B,C3ORF36
SE_02_117000076 chr3:142017056-142048186 31130 76 8 758 96 1 49 36 TFDP2
SE_02_117000075 chr3:152241560-152274980 33420 75 13 708 34 0 127 796 MBNL1-AS1,MBNL1
SE_02_117000084 chr3:152315810-152332290 16480 84 14 426 29 2 23 0 MBNL1,MBNL1-AS1,TMEM14E
SE_02_117000012 chr3:156458220-156493780 35560 12 10 827 53 8 105 150 KCNAB1,KCNAB1-AS1
SE_02_117000142 chr3:37896990-37908977 11987 142 4 300 27 0 17 0 CTDSPL,ITGA9-AS1
SE_02_117000136 chr3:43670920-43692894 21974 136 9 628 46 0 22 128 ABHD5,ANO10
SE_02_117000120 chr3:47297221-47317790 20569 120 9 455 25 0 0 0 KLHL18,KIF9
SE_02_117000134 chr3:98574306-98592574 18268 134 8 542 57 2 33 353 CPOX,GPR15
SE_02_117000151 chr4:126545592-126573341 27749 151 8 773 0 2 16 0
SE_02_117000147 chr4:143998024-144016715 18691 147 11 716 25 0 7 163 GYPB
SE_02_117000113 chr4:163188091-163202186 14095 113 5 415 14 2 13 0 NAF1
SE_02_117000048 chr4:174632608-174660206 27598 48 12 759 30 3 26 203 GLRA3,HPGD
SE_02_117000014 chr4:174676487-174716922 40435 14 21 1164 51 4 18 114 GLRA3,LOC101928551
SE_02_117000153 chr4:1873299-1887131 13832 153 10 387 12 0 11 0 WHSC1,LETM1
SE_02_117000174 chr4:40198746-40212638 13892 174 13 371 8 0 15 0 RHOH
SE_02_117000052 chr4:48188468-48213265 24797 52 14 579 76 3 30 0 TEC,TXK
SE_02_117000106 chr4:48622850-48640634 17784 106 16 406 25 1 16 189 FRYL,ZAR1,SLC10A4
SE_02_117000007 chr4:78599312-78667070 67758 7 31 1800 149 3 142 277 ANXA3,LINC01094
SE_02_117000017 chr4:78684228-78734441 50213 17 36 1374 69 0 89 36 LINC01094,BMP2K
SE_02_117000182 chr4:78763504-78781417 17913 182 11 432 10 0 43 215 BMP2K
SE_02_117000058 chr6:101884959-101934716 49757 58 14 1336 102 2 149 145 GRIK2
SE_02_117000066 chr6:119309938-119341204 31266 66 13 919 62 13 84 121 MAN1A1
SE_02_117000046 chr6:129659724-129705602 45878 46 15 1196 44 9 98 0 ARHGAP18
SE_02_117000119 chr6:135094187-135119545 25358 119 12 689 57 26 125 0 HBS1L
SE_02_117000059 chr6:135174405-135195611 21206 59 10 439 24 7 132 483 MYB,MIR548A2
SE_02_117000133 chr6:135318281-135327205 8924 133 7 214 18 2 36 98 AHI1,MIR548A2
SE_02_117000104 chr6:135402805-135423842 21037 104 11 557 30 2 29 62 AHI1
SE_02_117000030 chr6:136714387-136745353 30966 30 18 797 96 4 39 47 MAP3K5
SE_02_117000169 chr6:161253828-161270025 16197 169 10 497 27 4 10 0 AGPAT4
SE_02_117000163 chr6:19963992-19975751 11759 163 9 308 6 8 13 0 ID4,MBOAT1
SE_02_117000162 chr6:25601921-25620384 18463 162 12 487 70 13 46 313 LRRC16A,SCGN
SE_02_117000061 chr6:37299350-37320506 21156 61 16 539 58 1 39 397 TBC1D22B,TMEM217,RNF8
SE_02_117000071 chr6:49632942-49649373 16431 71 11 418 40 1 22 47 RHAG
SE_02_117000149 chr7:16260546-16270793 10247 149 7 295 23 1 18 218 ISPD,ISPD-AS1
SE_02_117000127 chr7:35160138-35184091 23953 127 10 595 46 0 20 124 DPY19L2P1
SE_02_117000091 chr7:80631647-80649685 18038 91 9 447 30 9 46 144 CD36
SE_02_117000139 chr7:81206429-81231252 24823 139 8 768 1 2 13 0 SEMA3C
SE_02_117000108 chr8:102375942-102396767 20825 108 10 521 50 0 9 0 UBR5
SE_02_117000037 chr8:107286534-107320715 34181 37 18 856 8 1 145 62 ANGPT1
SE_02_117000035 chr8:124628654-124657702 29048 35 15 793 33 5 36 0 MTSS1
SE_02_117000074 chr8:124725533-124751246 25713 74 13 701 90 6 123 216 MTSS1
SE_02_117000003 chr8:125142136-125193331 51195 3 34 1270 74 0 144 58 NSMCE2
SE_02_117000095 chr8:125272619-125311016 38397 95 9 1061 28 6 146 0 NSMCE2,TRIB1
SE_02_117000045 chr8:128030142-128061626 31484 45 12 952 24 10 62 76 PVT1,MIR1207,MIR1206
SE_02_117000101 chr8:129534026-129560609 26583 101 9 696 0 3 116 0 CCDC26,MIR3686
SE_02_117000029 chr8:23491516-23532207 40691 29 21 1106 93 0 81 191 SLC25A37,ENTPD4
SE_02_117000081 chr8:38080081-38093690 13609 81 9 345 10 0 0 0 ASH2L,EIF4EBP1
SE_02_117000069 chr8:38757659-38769873 12214 69 11 289 27 0 8 0 TACC1
SE_02_117000067 chr8:55843845-55869003 25158 67 15 634 42 2 27 0 LYN
SE_02_117000112 chr8:77968106-77991268 23162 112 9 623 24 0 37 0 LOC102724874
SE_02_117000188 chr8:85354439-85376078 21639 188 11 512 40 1 48 0 CA1
SE_02_117000180 chr9:11060330-11067938 7608 180 6 260 1 0 0 0 PTPRD-AS2
SE_02_117000148 chr9:116461398-116471384 9986 148 9 275 6 2 46 0 ASTN2,ASTN2-AS1
SE_02_117000089 chr9:12956644-12975207 18563 89 7 565 17 11 33 0 LURAP1L-AS1
SE_02_117000111 chr9:14151979-14164555 12576 111 6 400 7 0 58 16 NFIB
SE_02_117000018 chr9:14193512-14215946 22434 18 9 717 32 0 127 0 NFIB
SE_02_117000001 chr9:14833495-14952493 118998 1 42 4194 228 11 224 780 FREM1,LOC389705
SE_02_117000135 chr9:14987936-14998797 10861 135 4 379 32 0 6 292 LOC389705
SE_02_117000129 chr9:15283183-15300434 17251 129 8 629 103 5 13 0 TTC39B
SE_02_117000049 chr9:20372933-20384716 11783 49 6 326 1 0 74 0 MLLT3,MIR4473
SE_02_117000043 chr9:26533093-26538974 5881 43 2 172 10 0 7 0 CAAP1
SE_02_117000118 chr9:32552705-32571256 18551 118 4 499 44 2 14 369 TOPORS-AS1,NDUFB6,TOPORS,DDX58
SE_02_117000068 chr9:3507324-3542472 35148 68 12 1043 48 0 183 136 RFX3
SE_02_117000002 chr9:4795721-4864334 68613 2 35 2615 224 28 94 582 RCL1,MIR101-2
SE_02_117000170 chr9:5070857-5079198 8341 170 4 257 25 0 19 108 JAK2
SE_02_117000099 chr9:5482024-5500755 18731 99 9 774 90 2 18 0 PDCD1LG2,PLGRKT,CD274
SE_02_117000152 chr9:72994948-73026254 31306 152 13 873 37 2 20 0 ALDH1A1
SE_02_117000039 chr9:77986564-78033582 47018 39 27 1235 57 3 144 177 GNAQ
SE_02_117000090 chr9:9995807-10006260 10453 90 9 324 0 2 0 0 PTPRD

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4304436
Input ID: Name:GSM4304437
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb