Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000085831 |
| Gene: | TTC39A | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr1:51287258-51345116 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_077000670 | chr1:51236510-51285169 |
Sample_02_0770 | Ovary | OVCA429_shLuc | 670 | 17 | 1239 | 102 | 2 | 131 | 355 | RNF11,TTC39A,TTC39A-AS1 |
| SE_02_059401163 | chr1:51255337-51269732 |
Sample_02_0594 | iPSC-derived | neural progenitors | 1163 | 4 | 351 | 30 | 0 | 11 | 0 | RNF11,TTC39A |
| SE_02_126401100 | chr1:51258861-51270112 |
Sample_02_1264 | Bone | Im-GCT-4072_G34W KO | 1100 | 3 | 266 | 19 | 0 | 14 | 40 | RNF11,TTC39A |
| SE_02_048100906 | chr1:51258925-51270860 |
Sample_02_0481 | Mammary gland | MDA-MB231 | 906 | 3 | 284 | 21 | 0 | 14 | 47 | RNF11,TTC39A |
| SE_02_126501375 | chr1:51258979-51270166 |
Sample_02_1265 | Bone | Im-GCT-4072_G34W-repair_WT_D6 | 1375 | 3 | 263 | 19 | 0 | 14 | 44 | RNF11,TTC39A |
| SE_02_044000578 | chr1:51259007-51268982 |
Sample_02_0440 | Bone | LM7 | 578 | 8 | 243 | 19 | 0 | 11 | 0 | RNF11,TTC39A |
| SE_02_084600774 | chr1:51259148-51269682 |
Sample_02_0846 | Mammary gland | MDA-MB-231_untreat | 774 | 4 | 250 | 19 | 0 | 11 | 0 | RNF11,TTC39A |
| SE_02_126601066 | chr1:51259722-51269973 |
Sample_02_1266 | Bone | Im-GCT-4072_G34W-repair_WT_E3 | 1066 | 2 | 239 | 18 | 0 | 11 | 24 | RNF11,TTC39A |
| SE_02_126301558 | chr1:51260330-51270199 |
Sample_02_1263 | Bone | Im-GCT-4072_G34W unedited | 1558 | 5 | 225 | 18 | 0 | 14 | 44 | RNF11,TTC39A |
| SE_02_099000667 | chr1:51260382-51269812 |
Sample_02_0990 | Breast cancer brain metastatic variant | MDA-MB-231 BrM2 | 667 | 5 | 219 | 18 | 0 | 11 | 2 | RNF11,TTC39A |
| SE_02_137901261 | chr1:51260660-51269440 |
Sample_02_1379 | Pancreas | Pancreatic_tumor_associated_fibroblasts_PS1_untreated | 1261 | 8 | 208 | 18 | 0 | 11 | 0 | RNF11,TTC39A |
| SE_02_151900202 | chr1:51301590-51318931 |
Sample_02_1519 | Umbilical vein | HUVEC_Scr_IL1beta | 202 | 15 | 483 | 16 | 0 | 48 | 974 | TTC39A,TTC39A-AS1 |
| SE_02_083200330 | chr1:51302783-51315739 |
Sample_02_0832 | Umblical vein | HUVECs_TNF30min | 330 | 7 | 339 | 7 | 0 | 36 | 711 | TTC39A,TTC39A-AS1 |
| SE_02_152000208 | chr1:51302888-51318927 |
Sample_02_1520 | Umbilical vein | HUVEC_Notch1kd_IL1beta | 208 | 11 | 442 | 13 | 0 | 35 | 711 | TTC39A,TTC39A-AS1 |
| SE_02_098901317 | chr1:51303865-51336663 |
Sample_02_0989 | Kidney | kidney cortex_WT | 1317 | 9 | 843 | 52 | 0 | 88 | 1213 | TTC39A-AS1,TTC39A |
| SE_02_062700139 | chr1:51304798-51354158 |
Sample_02_0627 | Mammary gland | WS8_VEH | 139 | 11 | 1226 | 99 | 2 | 107 | 1385 | TTC39A-AS1,TTC39A |
| SE_02_077500986 | chr1:51304800-51337857 |
Sample_02_0775 | Pancreas | EndoC-BH1_SE | 986 | 12 | 855 | 57 | 0 | 88 | 1213 | TTC39A-AS1,TTC39A |
| SE_02_107700192 | chr1:51304853-51332681 |
Sample_02_1077 | Mammary gland | MCF7_TET2KO-E2 | 192 | 6 | 723 | 39 | 0 | 81 | 1213 | TTC39A-AS1,TTC39A |
| SE_02_123400155 | chr1:51304897-51343085 |
Sample_02_1234 | Mammary gland | T47D_Full | 155 | 11 | 967 | 70 | 1 | 89 | 1213 | TTC39A-AS1,TTC39A |
| SE_02_062500145 | chr1:51304971-51355562 |
Sample_02_0625 | Mammary gland | WS8_4OHT | 145 | 12 | 1256 | 106 | 2 | 126 | 1448 | TTC39A-AS1,EPS15,TTC39A |
| SE_02_109200431 | chr1:51304994-51332644 |
Sample_02_1092 | Mammary gland | T47D_shCtrl_24hr | 431 | 9 | 718 | 39 | 0 | 81 | 1186 | TTC39A-AS1,TTC39A |
| SE_02_062300200 | chr1:51305228-51332764 |
Sample_02_0623 | Mammary gland | TAMR_E2 | 200 | 5 | 713 | 39 | 0 | 76 | 1129 | TTC39A-AS1,TTC39A |
| SE_02_109300557 | chr1:51305381-51333882 |
Sample_02_1093 | Mammary gland | T47D_shCtrl_shRING1B_24hr | 557 | 10 | 731 | 42 | 0 | 77 | 1110 | TTC39A-AS1,TTC39A |
| SE_02_052700088 | chr1:51305456-51355581 |
Sample_02_0527 | Mammary gland | MCF7_WT | 88 | 25 | 1240 | 106 | 2 | 121 | 1368 | TTC39A-AS1,EPS15,TTC39A |
| SE_02_062400278 | chr1:51305491-51332759 |
Sample_02_0624 | Mammary gland | TAMR_VEH | 278 | 5 | 704 | 39 | 0 | 76 | 1110 | TTC39A-AS1,TTC39A |
| SE_01_011300096 | chr1:51305672-51332692 |
Sample_01_0113 | Mammary gland | MCF-7 | 96 | 8 | 701 | 39 | 0 | 76 | 1110 | TTC39A-AS1,TTC39A |
| SE_02_081000290 | chr1:51306027-51335009 |
Sample_02_0810 | Mammary gland | T47D noSerum | 290 | 12 | 754 | 48 | 0 | 79 | 1056 | TTC39A-AS1,TTC39A |
| SE_02_074901015 | chr1:51312442-51332573 |
Sample_02_0749 | Mammary gland | HCC1599_GSI | 1015 | 4 | 520 | 36 | 0 | 69 | 718 | TTC39A-AS1,TTC39A |
| SE_02_053200380 | chr1:51313750-51332629 |
Sample_02_0532 | Mammary gland | T47D | 380 | 5 | 484 | 34 | 0 | 59 | 622 | TTC39A-AS1,TTC39A |
Genomic distribution of SEs associated with TTC39A