SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000243926
Gene: TIPARP-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:156671862-156674446 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_147300086 chr3:156593209-156648579 Sample_02_1473 Bone A-673 86 16 1425 179 8 159 0 SSR3,TIPARP-AS1,TIPARP
SE_02_147700120 chr3:156593212-156629145 Sample_02_1477 Bone EW-22 120 7 952 113 2 100 0 SSR3,TIPARP-AS1,TIPARP
SE_02_105900086 chr3:156593214-156648579 Sample_02_1059 Bone A673_WT 86 16 1425 179 8 159 0 SSR3,TIPARP-AS1,TIPARP
SE_02_076300614 chr3:156593324-156633932 Sample_02_0763 Podocyte podocyte_DEX 614 12 1066 126 2 114 0 SSR3,TIPARP-AS1,TIPARP
SE_02_105800142 chr3:156593376-156648206 Sample_02_1058 Bone A673_SA2 Rescue 142 20 1410 176 8 158 0 SSR3,TIPARP-AS1,TIPARP
SE_02_143200268 chr3:156593392-156629652 Sample_02_1432 Bone A673 STAG2 WT 268 14 961 113 2 101 0 SSR3,TIPARP-AS1,TIPARP
SE_02_147500361 chr3:156593809-156644938 Sample_02_1475 Bone CHLA-25 361 9 1320 162 6 142 0 SSR3,TIPARP-AS1,TIPARP
SE_02_148000379 chr3:156593852-156631050 Sample_02_1480 Bone MHH-ES-1 379 10 995 116 2 99 0 SSR3,TIPARP-AS1,TIPARP
SE_02_143300196 chr3:156593918-156645109 Sample_02_1433 Bone A673 STAG2 null 196 20 1323 162 6 146 0 SSR3,TIPARP-AS1,TIPARP
SE_02_148300207 chr3:156593925-156629073 Sample_02_1483 Bone RD-ES 207 10 939 110 2 92 0 SSR3,TIPARP-AS1,TIPARP
SE_02_077000482 chr3:156594259-156644073 Sample_02_0770 Ovary OVCA429_shLuc 482 22 1296 158 5 140 0 SSR3,TIPARP-AS1,TIPARP
SE_02_125901109 chr3:156601838-156629191 Sample_02_1259 Bone Im-GCT-3504_G34W-repair_WT_4C7 1109 12 722 85 2 58 0 SSR3,TIPARP-AS1,TIPARP
SE_02_081100525 chr3:156601944-156630485 Sample_02_0811 Thyroid BCPAP 525 15 757 86 2 64 0 SSR3,TIPARP-AS1,TIPARP
SE_02_076600178 chr3:156602373-156648754 Sample_02_0766 Ovary PEO1 178 20 1178 149 7 114 0 SSR3,TIPARP-AS1,TIPARP
SE_02_076900635 chr3:156604786-156631273 Sample_02_0769 Ovary HEYA8 635 15 713 88 1 50 0 SSR3,TIPARP-AS1,TIPARP
SE_02_151300107 chr3:156605006-156648181 Sample_02_1513 Lung Transitional AT2->1 cells 107 11 1102 142 7 101 0 SSR3,TIPARP,TIPARP-AS1
SE_02_113800865 chr3:156605067-156631087 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 865 7 696 85 1 50 0 SSR3,TIPARP,TIPARP-AS1
SE_02_153300240 chr3:156605104-156629956 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 240 10 659 79 1 45 0 SSR3,TIPARP,TIPARP-AS1
SE_02_077100979 chr3:156605168-156631384 Sample_02_0771 Ovary OVCA429_shGRHL2 979 14 706 88 1 50 0 SSR3,TIPARP,TIPARP-AS1
SE_02_113701214 chr3:156605315-156631298 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 1214 11 699 88 1 50 0 TIPARP,TIPARP-AS1
SE_02_151400212 chr3:156605334-156643866 Sample_02_1514 Lung Differentiated AT1-like cells 212 15 987 125 4 91 0 TIPARP,TIPARP-AS1
SE_02_151200200 chr3:156605343-156634270 Sample_02_1512 Lung Purified AT2 cells 200 11 759 93 1 57 0 TIPARP,TIPARP-AS1
SE_02_113900984 chr3:156605386-156631271 Sample_02_1139 Retinal Pigmented Epithelial RPE1-anaphase/telophase 984 9 698 88 1 50 0 TIPARP,TIPARP-AS1
SE_02_049100930 chr3:156605750-156632392 Sample_02_0491 Pharyng Detroit 562-Control 930 5 704 89 1 53 0 TIPARP,TIPARP-AS1
SE_02_094700477 chr3:156605791-156631764 Sample_02_0947 Tongue Cal27 477 8 694 88 1 49 0 TIPARP,TIPARP-AS1
SE_02_076700480 chr3:156606061-156643759 Sample_02_0767 Ovary OVCA429 480 18 970 123 4 84 0 TIPARP,TIPARP-AS1
SE_02_049201175 chr3:156613834-156632514 Sample_02_0492 Pharyng Detroit 562_LPS 1175 5 506 58 1 39 0 TIPARP,TIPARP-AS1
SE_02_156400110 chr3:156675751-156707852 Sample_02_1564 Gastrointestinal Stromal GIST-430 110 23 693 57 5 227 501 TIPARP,TIPARP-AS1
SE_02_151700319 chr3:156675801-156723252 Sample_02_1517 Mammary gland non-transformed human mammary epithelial cell 319 9 995 95 6 230 489 TIPARP,TIPARP-AS1
SE_02_151600096 chr3:156675811-156727392 Sample_02_1516 Non-transformed mammary epithelial IMEC MYC 96 19 1064 107 7 257 487 TIPARP,TIPARP-AS1
SE_02_154600078 chr3:156676163-156706400 Sample_02_1546 Gastrointestinal Stromal GIST-430/654 78 14 661 56 5 198 451 TIPARP,TIPARP-AS1
SE_02_137600459 chr3:156677569-156729982 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 459 47 1083 108 7 249 442 TIPARP,TIPARP-AS1
SE_02_137400441 chr3:156677930-156732833 Sample_02_1374 Pancreas Pancreatic_tumor_associated_fibroblasts_B009B_untreated 441 45 1140 113 7 259 406 TIPARP,TIPARP-AS1
SE_02_047400314 chr3:156678185-156733084 Sample_02_0474 Fibroblast umbilical cord Fibroblast 314 21 1134 113 7 258 374 TIPARP,TIPARP-AS1
SE_02_137500448 chr3:156678356-156729811 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 448 41 1064 108 7 238 359 TIPARP,TIPARP-AS1
SE_02_064901178 chr3:156678502-156706249 Sample_02_0649 Tracheobronchial epithelial HTBE_H3N2_06h 1178 13 615 55 5 167 303 TIPARP,TIPARP-AS1
SE_02_145201100 chr3:156678607-156694735 Sample_02_1452 Arter pulmonary arterial smooth muscle cells_PAH2_sictrl 1100 11 373 36 3 97 44 TIPARP,TIPARP-AS1
SE_02_075400445 chr3:156678614-156693143 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 445 5 332 33 3 84 12 TIPARP,TIPARP-AS1
SE_02_116200734 chr3:156678684-156729865 Sample_02_1162 Stomach YCC11 734 23 1062 108 7 232 334 TIPARP,TIPARP-AS1
SE_02_088100771 chr3:156678749-156722833 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 771 11 926 93 6 195 329 TIPARP,TIPARP-AS1
SE_02_071200317 chr3:156678800-156726987 Sample_02_0712 Pancreas BxPC3_sgNEG 317 13 999 106 7 223 326 TIPARP,TIPARP-AS1
SE_02_070700197 chr3:156678873-156694053 Sample_02_0707 Pancreas BxPC3 WT 197 9 348 34 3 85 13 TIPARP,TIPARP-AS1
SE_02_095100436 chr3:156679438-156706661 Sample_02_0951 HMSCs hMSCs 436 12 589 53 5 178 311 TIPARP,TIPARP-AS1
SE_02_143701179 chr3:156679507-156723547 Sample_02_1437 Liver LSEC-TNF 1179 16 915 92 6 198 326 TIPARP,TIPARP-AS1
SE_02_049300996 chr3:156679579-156690115 Sample_02_0493 Islets differentiated hESCs Early pancreatic progenitor cells 996 4 231 25 3 82 0 TIPARP,TIPARP-AS1
SE_02_072000347 chr3:156679615-156712480 Sample_02_0720 Pancreas AsPC1_TP63dN_DOX 347 13 696 59 5 195 326 TIPARP,TIPARP-AS1
SE_02_047500826 chr3:156679636-156711758 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 826 9 680 56 5 195 326 TIPARP,TIPARP-AS1
SE_02_068701107 chr3:156679646-156692952 Sample_02_0687 Lung NCI-H146_no infection 1107 9 296 29 3 83 0 TIPARP,TIPARP-AS1
SE_02_143601362 chr3:156679687-156723259 Sample_02_1436 Liver LSEC-Ctrl 1362 18 906 91 6 196 326 TIPARP,TIPARP-AS1
SE_02_151100595 chr3:156679696-156727929 Sample_02_1511 Lung H3122_untreated 595 20 985 104 7 225 326 TIPARP,TIPARP-AS1
SE_02_088000928 chr3:156679713-156719529 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 928 12 843 81 6 195 326 TIPARP,TIPARP-AS1
SE_02_154900507 chr3:156680440-156729916 Sample_02_1549 Gastrointestinal Stromal GIST-430B 507 22 1013 102 6 232 326 TIPARP,TIPARP-AS1
SE_02_141600629 chr3:156680601-156730061 Sample_02_1416 Brain SF9402 629 16 1010 102 6 231 326 TIPARP,TIPARP-AS1
SE_02_049401310 chr3:156724621-156730315 Sample_02_0494 Islets differentiated hESCs Late pancreatic progenitor cells 1310 3 109 8 0 32 0 TIPARP,TIPARP-AS1
Genomic distribution of SEs associated with TIPARP-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of TIPARP-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)