SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000115593
Gene: SMYD1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:88067825-88113384 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101701943 chr2:88001719-88043002 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1943 10 1057 52 4 29 189 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_107800123 chr2:88005195-88019497 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 123 7 509 27 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_107900373 chr2:88005470-88019500 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 373 10 499 26 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_074000230 chr2:88005612-88019584 Sample_02_0740 Muscle RH3 230 4 493 24 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_041800393 chr2:88006777-88025255 Sample_02_0418 Embryo H9_Null+EZH2 393 3 578 28 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_069400199 chr2:88007026-88025593 Sample_02_0694 Lung NCI-H82_no infection 199 3 582 27 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_037200492 chr2:88015164-88019844 Sample_02_0372 Skeletal muscle RMS008 492 1 249 12 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_068800217 chr2:88015454-88025526 Sample_02_0688 Lung NCI-H211_no infection 217 4 361 16 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_097200848 chr2:88015845-88019818 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 848 1 224 12 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_087500813 chr2:88016407-88064717 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 813 10 1149 59 6 71 316 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_103601510 chr2:88031369-88061985 Sample_02_1036 Mammary gland HCC70_XY018 1510 11 664 35 5 52 177 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_001200070 chr2:88035199-88059176 Sample_02_0012 Kidney 786-O_non-targeting 70 7 510 25 4 34 150 KRCC1,RGPD1,SMYD1
SE_02_026800254 chr2:88035878-88059443 Sample_02_0268 Kidney A-498 254 4 511 29 4 34 150 KRCC1,SMYD1
SE_02_157900237 chr2:88035905-88060484 Sample_02_1579 Renal 786-M1A 237 6 544 31 5 39 150 KRCC1,SMYD1,MIR4780
SE_02_001000219 chr2:88036025-88059345 Sample_02_0010 Kidney A-498_emptyvector 219 4 504 26 4 34 150 KRCC1,SMYD1
SE_02_047800531 chr2:88036114-88060401 Sample_02_0478 Colon normal colon mucosa 531 11 539 31 5 35 150 KRCC1,SMYD1,MIR4780
SE_02_155100462 chr2:88036455-88056478 Sample_02_1551 Gastrointestinal Stromal MaMel 462 3 422 23 4 34 150 KRCC1,SMYD1,MIR4780
SE_02_026700229 chr2:88037099-88061727 Sample_02_0267 Kidney 786-O 229 4 552 32 5 46 129 KRCC1,SMYD1
SE_02_080800512 chr2:88038600-88062046 Sample_02_0808 Ovary RMG1_ARID1A KO 512 12 525 31 5 44 127 KRCC1,SMYD1,MIR4780
SE_02_096000356 chr2:88048083-88056429 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 356 3 185 9 1 32 127 KRCC1,SMYD1,MIR4780
SE_02_047700506 chr2:88053018-88062958 Sample_02_0477 Colon intestinal epithelial organoids_139a 506 6 248 14 2 44 127 KRCC1,SMYD1,MIR4780
SE_02_023600543 chr2:88053641-88058887 Sample_02_0236 Colon V206 543 2 122 4 1 32 127 KRCC1,SMYD1
Genomic distribution of SEs associated with SMYD1
Genome Browser

The strength of the tissue affected by the gene

Expression of SMYD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)