SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000131389
Gene: SLC6A6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr3:14402576-14489349 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101700323 chr3:14256298-14374599 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 323 25 3896 310 12 153 0 LINC01267,SLC6A6
SE_02_033000376 chr3:14316977-14375466 Sample_02_0330 Endoderm MHG 376 15 1942 135 7 75 0 SLC6A6
SE_02_139800168 chr3:14318746-14383723 Sample_02_1398 Bone U2OS_siNC 168 20 2145 158 7 76 0 LINC01267,SLC6A6
SE_02_032800306 chr3:14319158-14355497 Sample_02_0328 Embryo H9_naive 306 5 1216 89 5 37 0 SLC6A6
SE_02_021100354 chr3:14329383-14396791 Sample_02_0211 Lung MRC-5_NFD_1DPT 354 10 2238 161 8 79 0 SLC6A6
SE_02_088600129 chr3:14345630-14490906 Sample_02_0886 Skin foreskin_ p63KLF4 129 39 4540 244 30 493 2582 SLC6A6,LINC01267,GRIP2
SE_02_084100229 chr3:14352202-14436000 Sample_02_0841 Blood THP-1_untr 229 32 2605 135 7 249 230 SLC6A6,LINC01267,CHCHD4
SE_02_152900038 chr3:14360055-14455732 Sample_02_1529 Peripheral blood neutrophils_0BC75 38 30 2994 152 11 338 771 SLC6A6,LINC01267,GRIP2
SE_02_115100223 chr3:14360399-14464264 Sample_02_1151 Mammary gland MCF-7_UNTR 223 42 3240 167 13 359 866 SLC6A6,LINC01267
SE_02_131300046 chr3:14360993-14442022 Sample_02_1313 Brain hMGLs_CD33_SNP 46 31 2493 128 9 260 230 SLC6A6,LINC01267
SE_02_131500063 chr3:14361452-14442029 Sample_02_1315 Brain hMGLs_INPP5D SNP 63 36 2475 127 9 260 230 SLC6A6,LINC01267
SE_02_121800114 chr3:14363250-14440633 Sample_02_1218 Bone marrow Daudi 114 42 2366 119 8 236 230 SLC6A6,LINC01267
SE_02_133000155 chr3:14363384-14441069 Sample_02_1330 Blood AMU-AML1 155 32 2373 119 8 240 230 SLC6A6,LINC01267
SE_02_092700075 chr3:14363581-14454636 Sample_02_0927 Peripheral blood neutrophils_US 75 27 2845 138 9 323 771 SLC6A6,LINC01267,GRIP2
SE_02_074100561 chr3:14363695-14392663 Sample_02_0741 Muscle RH30 561 10 915 60 1 18 0 LINC01267,SLC6A6
SE_02_108300009 chr3:14366495-14474058 Sample_02_1083 Macula macula 9 26 3344 169 20 388 1204 SLC6A6,LINC01267
SE_02_153000066 chr3:14366545-14459222 Sample_02_1530 Peripheral blood neutrophils_0BA0X 66 22 2890 147 10 328 866 SLC6A6,LINC01267,GRIP2
SE_02_127300031 chr3:14367118-14453048 Sample_02_1273 Cervix HeLa 31 21 2686 128 8 312 771 SLC6A6,LINC01267
SE_02_108200008 chr3:14368510-14491940 Sample_02_1082 Retina retina 8 33 3797 192 26 478 2753 SLC6A6,GRIP2,LINC01267
SE_02_082600050 chr3:14369365-14444792 Sample_02_0826 Stomach gastric tumor 50 44 2311 114 8 273 461 SLC6A6,LINC01267
SE_02_058600084 chr3:14369372-14442023 Sample_02_0586 Chordal patient-derived chordoma MGH_4 84 16 2210 112 8 257 230 SLC6A6,LINC01267
SE_01_009700228 chr3:14369381-14475019 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 228 24 3262 164 20 387 1204 SLC6A6,LINC01267
SE_02_051700266 chr3:14369383-14460949 Sample_02_0517 Esophagus TE5 266 33 2831 147 11 331 866 SLC6A6,LINC01267
SE_02_050600270 chr3:14369383-14460950 Sample_02_0506 Esophagus TE5_1 270 33 2831 147 11 331 866 SLC6A6,LINC01267
SE_02_153900475 chr3:14369385-14414550 Sample_02_1539 Nasopharyngeal C666-1 475 15 1356 71 2 159 143 SLC6A6,LINC01267
SE_01_009400420 chr3:14369499-14474463 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 420 24 3239 163 20 387 1204 SLC6A6,LINC01267
SE_02_115400245 chr3:14369690-14454246 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 245 16 2630 128 8 320 771 SLC6A6,LINC01267
SE_02_153100066 chr3:14370577-14454205 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 66 32 2598 126 8 319 771 SLC6A6,LINC01267,GRIP2
SE_02_092800242 chr3:14371052-14440640 Sample_02_0928 Peripheral blood neutrophils_Ecoli 242 21 2109 107 7 234 230 SLC6A6,LINC01267,GRIP2
SE_02_021601503 chr3:14371202-14385144 Sample_02_0216 Skin NHEK_scramble 1503 5 448 37 0 16 0 SLC6A6
SE_02_098800418 chr3:14371304-14411596 Sample_02_0988 Blood K562_EPZ 418 8 1213 64 1 146 143 SLC6A6,LINC01267
SE_02_133200144 chr3:14371341-14440049 Sample_02_1332 Blood Monomac6_CTRL 144 19 2082 104 7 234 230 SLC6A6,LINC01267
SE_02_104800093 chr3:14374328-14461940 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 93 38 2709 136 11 330 866 SLC6A6,LINC01267
SE_02_099300576 chr3:14375633-14434815 Sample_02_0993 Blood MOLM-13_empty 576 20 1793 81 5 214 230 SLC6A6,LINC01267
SE_02_099500662 chr3:14376894-14434954 Sample_02_0995 Blood MOLM-13_empty vector 662 19 1766 80 5 208 230 SLC6A6,LINC01267
SE_02_083300640 chr3:14376966-14440036 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 640 17 1912 94 7 221 230 SLC6A6,LINC01267
SE_02_133100343 chr3:14377974-14434549 Sample_02_1331 Blood Molm13_CTRL 343 15 1713 72 5 208 230 SLC6A6,LINC01267
SE_02_131400111 chr3:14378034-14440419 Sample_02_1314 Brain hMGLs_TREM2-KO 111 27 1894 88 7 221 230 SLC6A6,LINC01267
SE_02_077500757 chr3:14387676-14420912 Sample_02_0775 Pancreas EndoC-BH1_SE 757 14 974 25 4 153 230 SLC6A6,LINC01267
SE_02_130300648 chr3:14388375-14453878 Sample_02_1303 Lymphoma RL_tazemetostat 648 16 2008 77 8 303 771 SLC6A6,LINC01267
SE_02_086400441 chr3:14388394-14476065 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 441 27 2686 115 22 371 1204 SLC6A6,LINC01267
SE_02_130400630 chr3:14388500-14453909 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 630 16 2007 77 8 303 771 SLC6A6,LINC01267
SE_02_115300367 chr3:14389469-14454380 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 367 12 2007 80 8 303 771 SLC6A6,LINC01267
SE_02_066001068 chr3:14390967-14434825 Sample_02_0660 Mammary gland MCF10DCIS 1068 13 1308 43 5 205 230 SLC6A6,LINC01267
SE_02_103300232 chr3:14391378-14440472 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 232 12 1467 59 7 218 230 SLC6A6,LINC01267
SE_02_153700045 chr3:14391382-14453658 Sample_02_1537 Mammary gland MDA-MB-231_ER?_L540Q_45min 45 14 1924 75 8 303 771 SLC6A6,LINC01267
SE_04_000900139 chr3:14391385-14467909 Sample_04_0009 Lung A549 139 21 2370 108 12 332 1011 SLC6A6,LINC01267
SE_02_120500406 chr3:14391388-14461842 Sample_02_1205 Brain NB3 406 28 2171 97 11 316 866 SLC6A6,LINC01267
SE_02_056900287 chr3:14391412-14473671 Sample_02_0569 Periodontal ligament mesenchymal stem cell 287 32 2535 113 20 364 1204 SLC6A6,LINC01267
SE_02_054500572 chr3:14391434-14413020 Sample_02_0545 Bone marrow K562 WT 572 3 620 19 1 137 143 SLC6A6,LINC01267
SE_02_117300293 chr3:14391439-14461970 Sample_02_1173 Brain GBM01 293 24 2176 97 11 316 866 SLC6A6,LINC01267
SE_02_119200344 chr3:14391458-14454353 Sample_02_1192 Brain GBM26 344 22 1952 78 8 303 771 SLC6A6,LINC01267
SE_02_119100288 chr3:14391459-14452841 Sample_02_1191 Brain GBM25 288 22 1891 74 8 288 771 SLC6A6,LINC01267
SE_02_137600190 chr3:14391473-14473629 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 190 27 2533 113 20 364 1204 SLC6A6,LINC01267
SE_02_086900152 chr3:14391521-14482955 Sample_02_0869 Fibroblast VH10_NO_UV 152 46 2797 123 25 417 1541 SLC6A6,LINC01267
SE_02_137500526 chr3:14391573-14432999 Sample_02_1375 Pancreas Pancreatic_tumor_associated_fibroblasts_B0010A_untreated 526 19 1226 41 5 205 230 SLC6A6,LINC01267
SE_02_119500532 chr3:14391578-14461170 Sample_02_1195 Brain GBM29 532 20 2141 96 11 314 866 SLC6A6,LINC01267
SE_02_099101034 chr3:14391579-14414984 Sample_02_0991 Breast cancer cell line lung metastatic variant MDA-MB-231 LM2 1034 7 670 20 2 142 143 SLC6A6,LINC01267
SE_02_109200304 chr3:14391692-14435420 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 304 11 1312 45 5 205 230 SLC6A6,LINC01267
SE_02_114500112 chr3:14391956-14475013 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 112 48 2555 113 20 370 1204 SLC6A6,LINC01267
SE_02_101700205 chr3:14392290-14489202 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 205 32 2956 135 25 440 2275 SLC6A6,GRIP2,LINC01267
SE_02_101500187 chr3:14392512-14482739 Sample_02_1015 Embryo H9_ Undifferentiated 187 26 2768 121 24 417 1541 SLC6A6,LINC01267
SE_02_059400988 chr3:14392570-14473720 Sample_02_0594 iPSC-derived neural progenitors 988 14 2504 112 20 364 1204 SLC6A6,LINC01267
SE_02_146400118 chr3:14393268-14442431 Sample_02_1464 Ovary CAOV4 118 13 1490 59 8 244 230 SLC6A6,LINC01267
SE_02_087500102 chr3:14393412-14490676 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 102 38 2987 138 26 451 2539 SLC6A6,GRIP2,LINC01267,C3orf20
SE_02_143400690 chr3:14393497-14435904 Sample_02_1434 Trophoblast trophoblast stem cells 690 7 1280 45 5 210 230 SLC6A6,LINC01267
SE_02_143200453 chr3:14393497-14490503 Sample_02_1432 Bone A673 STAG2 WT 453 37 2976 137 26 451 2511 SLC6A6,GRIP2,LINC01267
SE_02_076200482 chr3:14393645-14490724 Sample_02_0762 Podocyte podocyte_CTL 482 19 2983 139 25 450 2553 SLC6A6,GRIP2,LINC01267
SE_02_146000177 chr3:14393717-14449730 Sample_02_1460 Blood Mutz-3 177 17 1727 70 7 282 771 SLC6A6,LINC01267
SE_02_109300482 chr3:14393888-14435431 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 482 14 1254 43 4 189 230 SLC6A6,LINC01267
SE_02_067400031 chr3:14394203-14473505 Sample_02_0674 Endometrium E1_FA 31 28 2453 111 19 344 1204 SLC6A6,LINC01267
SE_02_138600227 chr3:14396006-14436074 Sample_02_1386 Peripheral blood Karpas-299_ALK+ 227 14 1211 42 4 195 230 SLC6A6,LINC01267
SE_02_057600955 chr3:14396128-14437021 Sample_02_0576 Blood HEL_sgLKB1e2 955 15 1229 45 5 196 230 SLC6A6,LINC01267
SE_02_103000462 chr3:14396200-14435007 Sample_02_1030 Colon DKO 462 17 1178 40 4 186 230 SLC6A6,LINC01267
SE_02_110500385 chr3:14396288-14482666 Sample_02_1105 Brain NBL-S 385 34 2663 117 23 396 1541 SLC6A6,LINC01267
SE_02_104700103 chr3:14396289-14492349 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 103 49 2961 136 25 440 2858 SLC6A6,GRIP2,LINC01267
SE_02_058000939 chr3:14396298-14435119 Sample_02_0580 Blood HEL_sgSIK3e4 939 8 1179 40 4 184 230 SLC6A6,LINC01267
SE_02_057900861 chr3:14396331-14434983 Sample_02_0579 Blood HEL_sgNeg2 861 13 1172 38 4 184 230 SLC6A6,LINC01267
SE_02_129900311 chr3:14396384-14438956 Sample_02_1299 Liver liver 311 26 1283 49 5 196 230 SLC6A6,LINC01267
SE_02_111200269 chr3:14397063-14490739 Sample_02_1112 T lymphocyte THP-6 T-ALL 269 30 2893 134 25 430 2554 SLC6A6,GRIP2,LINC01267
SE_02_083600965 chr3:14397118-14461763 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 965 18 2017 90 10 294 866 SLC6A6,LINC01267
SE_02_045900428 chr3:14397207-14441888 Sample_02_0459 Blood ME-1_DMSO_6h 428 20 1362 54 7 218 230 SLC6A6,LINC01267
SE_00_005500090 chr3:14397451-14439554 Sample_00_0055 Spleen spleen 34y 90 17 1269 50 6 193 230 SLC6A6,LINC01267,GRIP2
SE_02_104000113 chr3:14397467-14442677 Sample_02_1040 Peripheral blood CD4+ cells_CTCL1126 113 26 1385 56 7 219 230 SLC6A6,LINC01267
SE_02_149200209 chr3:14397480-14473558 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 209 18 2366 106 19 338 1204 SLC6A6,LINC01267
SE_02_104900154 chr3:14397482-14492400 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 154 53 2929 134 25 436 2869 SLC6A6,GRIP2,LINC01267
SE_02_104300201 chr3:14397495-14474321 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 201 49 2382 106 19 345 1204 SLC6A6,LINC01267
SE_02_122800173 chr3:14397566-14453952 Sample_02_1228 Mammary gland MDA-MB-231_2 173 18 1766 70 7 278 771 SLC6A6,LINC01267
SE_02_139400091 chr3:14397646-14435358 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 91 8 1146 38 4 180 230 SLC6A6,LINC01267
SE_02_083500751 chr3:14397671-14449719 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 751 18 1617 65 7 259 771 SLC6A6,LINC01267
SE_02_046000202 chr3:14397758-14440439 Sample_02_0460 Blood ME-1_I-10-49_6h 202 21 1293 52 6 190 230 SLC6A6,LINC01267
SE_02_082700083 chr3:14399961-14436870 Sample_02_0827 Stomach normal gastric 83 11 1133 39 5 171 230 SLC6A6,LINC01267
SE_02_085300045 chr3:14400376-14464417 Sample_02_0853 Mammary gland MCF7L-TamR 45 16 2003 89 10 286 866 SLC6A6,LINC01267
SE_02_081700078 chr3:14401148-14473615 Sample_02_0817 Ovary Epithelial ovarian cancer 78 31 2265 100 19 320 1204 SLC6A6,LINC01267
SE_02_090500448 chr3:14401462-14480424 Sample_02_0905 Heart left ventricle_DCM_LV1033 448 25 2457 104 23 359 1417 SLC6A6,LINC01267
SE_04_000200319 chr3:14401671-14440471 Sample_04_0002 Blood cold shocked K562 319 7 1182 46 6 174 230 SLC6A6,LINC01267
SE_02_061700260 chr3:14401682-14454402 Sample_02_0617 HSPC FL CD34+CD38-/lowCD90+ HSPC 260 13 1670 65 7 259 771 SLC6A6,LINC01267
SE_02_067200048 chr3:14401697-14473543 Sample_02_0672 Endometrium endometrium cancer_DSG 48 28 2247 100 19 319 1204 SLC6A6,LINC01267
SE_04_000100634 chr3:14401732-14441765 Sample_04_0001 Blood heat shocked K562 634 5 1224 48 7 196 230 SLC6A6,LINC01267
SE_02_078100374 chr3:14401854-14442697 Sample_02_0781 Lymphoma Pfeiffer_DMSO 374 9 1260 50 7 198 230 SLC6A6,LINC01267
SE_02_153200734 chr3:14401900-14435106 Sample_02_1532 Mammary gland MCF10A 734 5 1022 32 4 151 230 SLC6A6,LINC01267
SE_02_107600154 chr3:14401911-14433495 Sample_02_1076 Mammary gland MCF7_TET2WT-E2 154 6 956 28 4 151 230 SLC6A6,LINC01267
SE_02_147000213 chr3:14401921-14473734 Sample_02_1470 Umbilical Vein H441 213 10 2244 100 19 312 1204 SLC6A6,LINC01267
SE_02_105900593 chr3:14401927-14458779 Sample_02_1059 Bone A673_WT 593 12 1783 78 9 256 866 SLC6A6,LINC01267
SE_02_147300597 chr3:14401927-14458779 Sample_02_1473 Bone A-673 597 13 1783 78 9 256 866 SLC6A6,LINC01267
SE_02_098900222 chr3:14401946-14482615 Sample_02_0989 Kidney kidney cortex_WT 222 32 2503 109 23 361 1541 SLC6A6,LINC01267
SE_02_076300538 chr3:14401946-14490780 Sample_02_0763 Podocyte podocyte_DEX 538 14 2750 128 25 395 2559 SLC6A6,GRIP2,LINC01267
SE_02_111600275 chr3:14401967-14412206 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 275 2 306 5 0 75 143 SLC6A6,LINC01267
SE_02_077800285 chr3:14401969-14414619 Sample_02_0778 Mammary gland MCF7_FASR 285 3 375 7 1 85 143 SLC6A6,LINC01267
SE_02_120000196 chr3:14401970-14473680 Sample_02_1200 Brain GBM36 196 21 2241 100 19 307 1204 SLC6A6,LINC01267
SE_02_143300309 chr3:14401970-14492096 Sample_02_1433 Bone A673 STAG2 null 309 45 2790 128 25 404 2803 SLC6A6,GRIP2,LINC01267
SE_02_113000467 chr3:14401988-14444157 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 467 9 1307 50 7 198 378 SLC6A6,LINC01267
SE_01_010400150 chr3:14401992-14460969 Sample_01_0104 Lung upper lobe of left lung 150 16 1846 83 10 257 866 SLC6A6,LINC01267
SE_02_158000049 chr3:14402006-14490642 Sample_02_1580 Renal 786-O 49 37 2740 127 25 394 2531 SLC6A6,GRIP2,LINC01267
SE_04_000500085 chr3:14402020-14461725 Sample_04_0005 Lung A549 FOXA2 overexpressed 85 12 1872 84 10 258 866 SLC6A6,LINC01267
SE_04_001000268 chr3:14402026-14473543 Sample_04_0010 Lung A549 TGFb 268 14 2237 100 19 306 1204 SLC6A6,LINC01267
SE_02_105600336 chr3:14402081-14453312 Sample_02_1056 Esophagus ChTRT 336 8 1618 61 7 245 771 SLC6A6,LINC01267
SE_02_103400524 chr3:14402086-14440118 Sample_02_1034 Blood AML cell 524 7 1158 45 6 161 230 SLC6A6,LINC01267
SE_04_000600262 chr3:14402091-14419616 Sample_04_0006 Lung A549 GFP control 262 5 558 10 3 96 230 SLC6A6,LINC01267
SE_02_158400209 chr3:14402179-14474212 Sample_02_1584 Brain U87 GBM_Mock 209 15 2247 100 19 313 1204 SLC6A6,LINC01267
SE_02_113800745 chr3:14402473-14435987 Sample_02_1138 Retinal Pigmented Epithelial RPE1-prometaphase 745 12 1029 34 4 152 219 SLC6A6,LINC01267
SE_02_113700656 chr3:14402473-14473997 Sample_02_1137 Retinal Pigmented Epithelial RPE1-interphase 656 22 2233 100 19 312 1193 SLC6A6,LINC01267
SE_02_157900442 chr3:14402503-14473867 Sample_02_1579 Renal 786-M1A 442 20 2229 100 19 312 1187 SLC6A6,LINC01267
SE_02_123000091 chr3:14402508-14434732 Sample_02_1230 Lung PC9 91 9 983 30 4 147 211 SLC6A6,LINC01267
SE_02_111100211 chr3:14402518-14488405 Sample_02_1111 Other HGrC1_SMAD2/3KO 211 24 2654 122 24 377 2138 SLC6A6,LINC01267
SE_02_045600427 chr3:14402525-14435283 Sample_02_0456 Th17 lymphocytes Th17-IL-10- Day 0 427 5 1006 32 4 147 210 SLC6A6,LINC01267
SE_02_144500548 chr3:14402529-14475114 Sample_02_1445 Adipose SW872_TAZ4SA 548 29 2266 100 19 312 1183 SLC6A6,LINC01267
SE_02_126800362 chr3:14402530-14416318 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 362 5 409 7 1 84 136 SLC6A6,LINC01267
SE_02_117500148 chr3:14402539-14440350 Sample_02_1175 Brain GBM03 148 15 1153 46 6 160 203 SLC6A6,LINC01267
SE_02_044800189 chr3:14402542-14473662 Sample_02_0448 Bone MNNG 189 28 2226 100 19 306 1176 SLC6A6,LINC01267
SE_02_078000077 chr3:14402542-14493834 Sample_02_0780 Liver SMMC-7721 77 22 2838 129 25 405 3133 SLC6A6,GRIP2,LINC01267
SE_01_010500410 chr3:14402545-14436053 Sample_01_0105 Thyroid gland thyroid gland_54y 410 12 1029 34 4 155 198 SLC6A6,LINC01267
SE_02_138801135 chr3:14402556-14435934 Sample_02_1388 Peripheral blood JB6_ALK+ 1135 10 1026 34 4 151 191 SLC6A6,LINC01267
SE_02_132100164 chr3:14402564-14473636 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 164 18 2226 100 19 304 1162 SLC6A6,LINC01267
SE_02_108600840 chr3:14402565-14434843 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 840 10 988 30 4 145 188 SLC6A6,LINC01267
SE_02_050500727 chr3:14402566-14454516 Sample_02_0505 Esophagus KYSE70_1 727 28 1648 65 7 244 728 SLC6A6,LINC01267
SE_02_051600725 chr3:14402566-14454516 Sample_02_0516 Esophagus KYSE70 725 28 1648 65 7 244 728 SLC6A6,LINC01267
SE_02_077700092 chr3:14402566-14463604 Sample_02_0777 Mammary gland MCF7_TAMR 92 9 1911 85 10 267 823 SLC6A6,LINC01267
SE_02_128000886 chr3:14402571-14454349 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 886 13 1645 65 7 243 727 SLC6A6
SE_02_132000226 chr3:14402575-14473643 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 226 18 2226 100 19 304 1159 SLC6A6
SE_02_064200091 chr3:14402576-14454439 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 91 24 1647 65 7 244 725 SLC6A6
SE_02_064000083 chr3:14402576-14473625 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 83 23 2226 100 19 304 1158 SLC6A6
SE_02_158100091 chr3:14402576-14481501 Sample_02_1581 Renal OS-LM1 91 30 2458 106 23 344 1371 SLC6A6
SE_02_123100069 chr3:14402577-14435489 Sample_02_1231 Lung PC9_siMED13L-1 69 16 1012 32 4 145 184 SLC6A6
SE_02_123400279 chr3:14402578-14435366 Sample_02_1234 Mammary gland T47D_Full 279 13 1008 32 4 145 184 SLC6A6
SE_02_117400997 chr3:14402586-14436043 Sample_02_1174 Brain GBM02 997 15 1029 34 4 152 181 SLC6A6
SE_02_152600525 chr3:14402587-14433264 Sample_02_1526 Lung PC9 DMSO 525 12 930 28 4 144 181 SLC6A6
SE_02_109900728 chr3:14402589-14414392 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 728 7 354 6 0 81 94 SLC6A6
SE_02_122500420 chr3:14402591-14435170 Sample_02_1225 Bone marrow RAJI 420 17 1006 32 4 143 181 SLC6A6
SE_02_158200060 chr3:14402593-14488479 Sample_02_1582 Renal OS-RC-2 60 32 2655 122 24 373 2133 SLC6A6
SE_02_064300069 chr3:14402594-14453752 Sample_02_0643 Mammary gland MDA-MB-436 69 21 1615 62 7 241 722 SLC6A6
SE_02_122900094 chr3:14402594-14486737 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 94 37 2609 118 24 368 1808 SLC6A6
SE_02_123300068 chr3:14402596-14434198 Sample_02_1233 Lung PC9_miR-4497 mimic 68 11 967 29 4 143 181 SLC6A6
SE_01_010600143 chr3:14402601-14435031 Sample_01_0106 Adrenal gland adrenal gland 54y 143 9 1003 32 4 142 181 SLC6A6
SE_02_130200568 chr3:14402604-14454081 Sample_02_1302 Lymphoma RL DMSO 568 15 1632 64 7 240 722 SLC6A6
SE_02_063600128 chr3:14402607-14473821 Sample_02_0636 Skin BJ5ta 128 14 2229 100 19 303 1155 SLC6A6
SE_02_124000121 chr3:14402611-14474083 Sample_02_1240 Skin MCC13_virus_negative 121 17 2234 100 19 307 1155 SLC6A6
SE_02_142400014 chr3:14402627-14442809 Sample_02_1424 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_4h 14 17 1248 50 7 179 178 SLC6A6
SE_02_141900166 chr3:14402640-14435838 Sample_02_1419 Brain hNSC 166 13 1024 34 4 144 178 SLC6A6
SE_02_092900185 chr3:14402645-14441627 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 185 29 1198 48 7 174 178 SLC6A6
SE_02_093000241 chr3:14402648-14441526 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 241 30 1198 48 7 167 178 SLC6A6
SE_04_000700301 chr3:14402651-14416198 Sample_04_0007 Lung A549 FOXA2 shRNA2 301 3 404 7 1 76 90 SLC6A6
SE_02_152300528 chr3:14402652-14433001 Sample_02_1523 Lung A549 DMSO 528 13 923 28 4 139 177 SLC6A6
SE_02_048100935 chr3:14402670-14454334 Sample_02_0481 Mammary gland MDA-MB231 935 16 1645 65 7 235 717 SLC6A6
SE_02_142900505 chr3:14402696-14449535 Sample_02_1429 Blood GM12878_WT 505 14 1474 59 7 216 710 SLC6A6
SE_02_152400380 chr3:14402702-14435269 Sample_02_1524 Lung H3122 DMSO 380 15 1006 32 4 137 166 SLC6A6
SE_02_134500437 chr3:14402894-14435583 Sample_02_1345 Leukophereses leukophereses_p358 437 15 1016 32 4 137 128 SLC6A6
SE_02_053000951 chr3:14402921-14453264 Sample_02_0530 Mammary gland MCF10A 951 18 1605 61 7 233 659 SLC6A6
SE_02_045100459 chr3:14403001-14454024 Sample_02_0451 Skin in vitro transformedskin fibroblasts_tumourigenic 459 11 1629 64 7 234 632 SLC6A6
SE_02_153300046 chr3:14403056-14436873 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 46 11 1047 37 5 143 87 SLC6A6
SE_02_142200123 chr3:14403069-14411555 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 123 6 272 5 0 57 0 SLC6A6
SE_02_142300010 chr3:14403235-14442692 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 10 14 1237 50 7 170 87 SLC6A6
SE_02_126300493 chr3:14403325-14473919 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 493 15 2224 100 19 296 1061 SLC6A6
SE_02_123200083 chr3:14403356-14432870 Sample_02_1232 Lung PC9_siMED13L-2 83 15 916 28 4 131 87 SLC6A6
SE_02_149600098 chr3:14403825-14441644 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 98 26 1181 48 7 161 87 SLC6A6
SE_02_151200064 chr3:14404185-14435828 Sample_02_1512 Lung Purified AT2 cells 64 11 998 34 4 120 87 SLC6A6
SE_02_151400316 chr3:14404248-14436061 Sample_02_1514 Lung Differentiated AT1-like cells 316 9 1003 34 4 123 87 SLC6A6
SE_00_005100044 chr3:14404269-14488512 Sample_00_0051 Adrenal gland adrenal gland 30y 44 57 2628 122 24 342 2042 SLC6A6
SE_02_081600850 chr3:14404276-14437085 Sample_02_0816 Ovary Clear cell ovarian cancer 850 18 1024 37 5 122 87 SLC6A6
SE_02_120300384 chr3:14404279-14468311 Sample_02_1203 Brain NB1 384 17 2039 95 11 256 928 SLC6A6
SE_02_138500293 chr3:14404329-14556098 Sample_02_1385 Other iPSCs 293 51 4695 287 46 554 5928 SLC6A6,GRIP2
SE_02_126701405 chr3:14404353-14436043 Sample_02_1267 Bone Im-GCT-4072_G34W 1405 12 999 34 4 116 87 SLC6A6
SE_02_151000050 chr3:14404362-14490770 Sample_02_1510 Lung H3122_LR_Pano 50 46 2705 128 25 354 2416 SLC6A6,GRIP2
SE_02_119800188 chr3:14404380-14462083 Sample_02_1198 Brain GBM34 188 30 1838 84 10 220 723 SLC6A6
SE_02_139800907 chr3:14404397-14436075 Sample_02_1398 Bone U2OS_siNC 907 7 1000 34 4 117 87 SLC6A6
SE_02_155500299 chr3:14404480-14435917 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 299 10 993 34 4 113 87 SLC6A6
SE_02_129700508 chr3:14404515-14454376 Sample_02_1297 Lung lung 508 19 1613 65 7 206 628 SLC6A6
SE_02_080800488 chr3:14404559-14477275 Sample_02_0808 Ovary RMG1_ARID1A KO 488 48 2313 100 22 277 1105 SLC6A6
SE_02_119700941 chr3:14404579-14460954 Sample_02_1197 Brain GBM33 941 21 1800 83 10 217 723 SLC6A6
SE_02_116200327 chr3:14404638-14487985 Sample_02_1162 Stomach YCC11 327 41 2609 122 24 335 1917 SLC6A6
SE_02_131200205 chr3:14404660-14439863 Sample_02_1312 Brain hMGLs_WT 205 23 1103 45 6 120 87 SLC6A6
SE_02_047600778 chr3:14404758-14433357 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 778 8 898 28 4 106 87 SLC6A6
SE_01_010800105 chr3:14404988-14435889 Sample_01_0108 Adrenal gland adrenal gland_37y 105 15 986 34 4 98 87 SLC6A6
SE_02_076901106 chr3:14405025-14436257 Sample_02_0769 Ovary HEYA8 1106 18 992 35 4 102 87 SLC6A6
SE_02_127500588 chr3:14405061-14436038 Sample_02_1275 Prostate PC3_Vorinostat 588 20 987 33 4 98 87 SLC6A6
SE_02_127700270 chr3:14405234-14434971 Sample_02_1277 Prostate PC3_COMBO 270 9 949 30 4 93 87 SLC6A6
SE_02_151300270 chr3:14405487-14436650 Sample_02_1513 Lung Transitional AT2->1 cells 270 11 989 32 4 103 87 SLC6A6
SE_02_149400074 chr3:14405523-14440131 Sample_02_1494 Other monocyte-derived dendritic cells_0h 74 18 1092 42 6 106 87 SLC6A6
SE_02_045200201 chr3:14405686-14475033 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 201 18 2208 97 19 257 1061 SLC6A6
SE_02_146500246 chr3:14407924-14435852 Sample_02_1465 Ovary CAOV4cis 246 11 914 30 4 89 87 SLC6A6
SE_02_132200264 chr3:14409133-14473701 Sample_02_1322 Connective Tissue HT1080_WT 264 14 2065 96 19 241 1061 SLC6A6
SE_02_153600349 chr3:14409256-14416549 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 349 4 251 3 1 19 57 SLC6A6
SE_02_047500498 chr3:14409487-14458873 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 498 12 1593 74 9 187 723 SLC6A6
SE_02_048400097 chr3:14409903-14441753 Sample_02_0484 Bone marrow HSCe_23y_CD34+,CD38-,Lineage- 97 14 997 44 7 116 87 SLC6A6
SE_02_043800542 chr3:14410042-14480983 Sample_02_0438 Bone HOS 542 20 2232 102 23 280 1274 SLC6A6
SE_02_078400885 chr3:14410244-14437148 Sample_02_0784 Blood OSU-CLL 885 4 831 34 5 92 87 SLC6A6
SE_02_048300075 chr3:14410296-14439527 Sample_02_0483 Bone marrow HSCe_22y_CD34+,CD38-,Lineage- 75 8 898 40 6 94 87 SLC6A6
SE_02_048900159 chr3:14410320-14435047 Sample_02_0489 Bone marrow HSCe_23y_F_CD34+,CD38-,Lineage- 159 8 777 28 4 81 87 SLC6A6
SE_02_071100882 chr3:14410417-14461361 Sample_02_0711 Pancreas hN35_organoid 882 19 1610 79 10 190 723 SLC6A6
SE_02_116000333 chr3:14410567-14441812 Sample_02_1160 Embryo H1_shLuc 333 11 968 44 7 116 87 SLC6A6
SE_02_131700202 chr3:14411219-14439119 Sample_02_1317 Brain hMGLs_SORL1-KO 202 21 852 38 5 88 87 SLC6A6
SE_02_055900754 chr3:14412392-14433196 Sample_02_0559 iPSCs FX52 iPSCs dC-T 754 8 634 23 4 70 87 SLC6A6
SE_02_131600219 chr3:14412640-14439556 Sample_02_1316 Brain hMGLs_TREM2-R47H 219 12 821 39 6 83 87 SLC6A6
SE_02_119600680 chr3:14412875-14461520 Sample_02_1196 Brain GBM32 680 15 1540 78 10 179 723 SLC6A6
SE_02_125500384 chr3:14413063-14436055 Sample_02_1255 Bladder Bladder tumor Luminal2 384 4 716 28 4 74 87 SLC6A6
SE_02_067700309 chr3:14413135-14432905 Sample_02_0677 Embryo H1 hESC-derived neural progenitor cells_Smad_6hr 309 5 607 22 4 65 87 SLC6A6
SE_00_005600664 chr3:14413291-14473528 Sample_00_0056 Sigmoid colon sigmoid colon 3y 664 21 1901 94 19 223 1061 SLC6A6
SE_02_131800390 chr3:14414116-14435045 Sample_02_1318 Brain hMGLs_SORL1-A528T 390 13 657 26 4 65 87 SLC6A6
SE_02_121300727 chr3:14415515-14461997 Sample_02_1213 Brain GBM31 727 14 1483 77 9 174 723 SLC6A6
SE_02_071900424 chr3:14418631-14458061 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 424 13 1228 67 7 160 589 SLC6A6
SE_00_004900758 chr3:14418869-14436027 Sample_00_0049 Small intestine small intestine 30y 758 10 509 24 2 60 0 SLC6A6
SE_02_103900076 chr3:14420204-14462032 Sample_02_1039 Peripheral blood CD4+ CD7- cells_CTCL1043 76 19 1310 74 7 163 636 SLC6A6
SE_02_045400454 chr3:14422521-14439242 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 454 3 492 30 2 60 0 SLC6A6
SE_02_104200374 chr3:14422546-14434686 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 374 12 354 17 1 48 0 SLC6A6
SE_02_045500694 chr3:14422688-14435381 Sample_02_0455 Th17 lymphocytes Th17-IL-10+ Day 5 694 5 378 19 1 48 0 SLC6A6
SE_02_104500468 chr3:14423181-14435313 Sample_02_1045 Peripheral blood CD4+ CD7- cells_CTCL992 468 14 365 19 1 47 0 SLC6A6
SE_02_045700643 chr3:14423392-14434611 Sample_02_0457 Th17 lymphocytes Th17-IL-10- Day 5 643 3 328 17 1 47 0 SLC6A6
SE_02_104400248 chr3:14423424-14436969 Sample_02_1044 Peripheral blood CD4+ cells_CTCL409 248 8 400 24 2 57 0 SLC6A6
SE_02_048500112 chr3:14423981-14441768 Sample_02_0485 Bone marrow HSCe_65y_CD34+,CD38-,Lineage- 112 7 545 35 4 81 0 SLC6A6
SE_00_004700369 chr3:14424038-14434593 Sample_00_0047 Blood effector memory CD4+ alpha-beta T cell 369 8 316 17 1 44 0 SLC6A6
SE_02_048200317 chr3:14424093-14435365 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 317 6 345 19 1 44 0 SLC6A6
SE_02_059100415 chr3:14424134-14434851 Sample_02_0591 PBMCs adult CD4+CD25-CD45RA+CD27+ naive T cells 415 8 323 17 1 43 0 SLC6A6
SE_02_048700160 chr3:14424378-14441198 Sample_02_0487 Bone marrow HSCe_71y_CD34+,CD38-,Lineage- 160 8 512 35 4 60 0 SLC6A6
SE_02_059200075 chr3:14424453-14435350 Sample_02_0592 PBMCs adult CD4+CD25hiCD127lo regulatory T cells 75 7 334 19 1 43 0 SLC6A6
SE_02_149500173 chr3:14424592-14435061 Sample_02_1495 Other monocyte-derived dendritic cells_R848_1h 173 9 325 19 1 43 0 SLC6A6
SE_02_095000623 chr3:14425142-14488726 Sample_02_0950 Umbilical vein HUVEC_WT 623 28 1960 109 21 272 2002 SLC6A6
SE_02_137000430 chr3:14425253-14441634 Sample_02_1370 Pancreas Patu8902-untreated 430 7 491 35 4 72 0 SLC6A6
SE_02_142200310 chr3:14427244-14435231 Sample_02_1422 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_0h 310 5 237 17 1 19 0 SLC6A6
SE_02_091700761 chr3:14428434-14481371 Sample_02_0917 Heart left ventricle_DCM_LV1433 761 14 1651 86 20 218 1187 SLC6A6
SE_02_155301050 chr3:14429131-14468205 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1050 19 1242 73 8 156 819 SLC6A6
SE_02_053301250 chr3:14429185-14462252 Sample_02_0533 Blood vessel Circle of Willis_54y 1250 12 1048 62 7 135 636 SLC6A6
SE_02_152000391 chr3:14430291-14488669 Sample_02_1520 Umbilical vein HUVEC_Notch1kd_IL1beta 391 22 1814 99 21 247 1995 SLC6A6
SE_02_061300944 chr3:14430403-14461022 Sample_02_0613 Liposarcoma MLPS_T1 944 8 980 60 7 126 636 SLC6A6
SE_02_126800272 chr3:14430906-14454248 Sample_02_1268 Bone Im-GCT-4072_G34W unedited_U3 272 5 769 40 4 109 541 SLC6A6
SE_02_153500133 chr3:14430923-14453746 Sample_02_1535 Mammary gland MDA-MB-231_ER?WT_45min 133 3 744 37 4 109 541 SLC6A6
SE_02_137801197 chr3:14431007-14488973 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 1197 20 1794 97 21 242 2033 SLC6A6
SE_02_141500728 chr3:14431086-14473532 Sample_02_1415 Brain DIPGIV 728 9 1351 75 16 168 974 SLC6A6
SE_02_120400836 chr3:14431093-14461797 Sample_02_1204 Brain NB2 836 9 987 59 7 121 636 SLC6A6
SE_02_058500339 chr3:14431099-14489570 Sample_02_0585 Umbilical vein HUVEC 0hour 339 20 1808 98 22 256 2091 SLC6A6,GRIP2
SE_02_083100422 chr3:14431119-14461838 Sample_02_0831 Umblical vein HUVECs_TNF0min 422 16 987 59 7 121 636 SLC6A6
SE_02_105400977 chr3:14431170-14473529 Sample_02_1054 Esophagus SKGT4 977 11 1349 75 16 168 974 SLC6A6
SE_02_146900374 chr3:14431178-14489708 Sample_02_1469 Umbilical Vein HUVEC 374 9 1808 98 22 256 2114 SLC6A6,GRIP2
SE_02_043700402 chr3:14431272-14473438 Sample_02_0437 Bone 143B 402 16 1343 75 16 168 974 SLC6A6
SE_02_133500304 chr3:14431278-14452840 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 304 6 706 36 4 93 541 SLC6A6
SE_02_154101068 chr3:14431301-14454046 Sample_02_1541 Nasopharyngeal HNE1 1068 13 753 39 4 108 541 SLC6A6
SE_02_153600622 chr3:14431302-14453412 Sample_02_1536 Mammary gland MDA-MB-231_ER?_L540Q_0min 622 5 730 37 4 107 541 SLC6A6
SE_02_114100129 chr3:14431361-14454475 Sample_02_1141 Peripheral nerve MPNST3813E_PRC2 mutant 129 6 766 40 4 109 541 SLC6A6
SE_02_137900940 chr3:14431377-14473582 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 940 11 1344 75 16 168 974 SLC6A6
SE_02_151800281 chr3:14431378-14488727 Sample_02_1518 Umbilical vein HUVEC_Scr 281 20 1780 97 21 240 2002 SLC6A6
SE_02_151900600 chr3:14431407-14488678 Sample_02_1519 Umbilical vein HUVEC_Scr_IL1beta 600 23 1780 97 21 240 1995 SLC6A6
SE_02_101300446 chr3:14431508-14460843 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 446 13 943 58 7 118 636 SLC6A6
SE_01_011501032 chr3:14431666-14473593 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 1032 7 1331 74 16 167 974 SLC6A6
SE_02_096100556 chr3:14432122-14453006 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 556 4 683 34 3 98 541 SLC6A6
SE_02_100100100 chr3:14432521-14441874 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 100 3 296 21 3 35 0 SLC6A6
SE_02_132500347 chr3:14451737-14473556 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 347 7 673 40 12 79 433 SLC6A6
SE_02_155500210 chr3:14452267-14488875 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 210 16 1104 62 17 151 1483 SLC6A6
SE_02_132400142 chr3:14452523-14462952 Sample_02_1324 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M 142 2 318 25 3 37 95 SLC6A6
Genomic distribution of SEs associated with SLC6A6
Genome Browser

The strength of the tissue affected by the gene

Expression of SLC6A6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)