SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000187627
Gene: RGPD1 Gene type: protein_coding
Strand: + External links:
Genomic region: chr2:86907953-87013976 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_101701943 chr2:88001719-88043002 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1943 10 1057 52 4 29 189 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_158000051 chr2:88003006-88077545 Sample_02_1580 Renal 786-O 51 26 1824 99 8 114 400 SMYD1,KRCC1,RGPD1,MIR4780
SE_02_107800123 chr2:88005195-88019497 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 123 7 509 27 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_107900373 chr2:88005470-88019500 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 373 10 499 26 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_074000230 chr2:88005612-88019584 Sample_02_0740 Muscle RH3 230 4 493 24 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_041800393 chr2:88006777-88025255 Sample_02_0418 Embryo H9_Null+EZH2 393 3 578 28 3 0 0 KRCC1,RGPD1,SMYD1
SE_02_069400199 chr2:88007026-88025593 Sample_02_0694 Lung NCI-H82_no infection 199 3 582 27 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_021200043 chr2:88014297-88017316 Sample_02_0212 Burkitts lymphoma of the left maxilla Raji_DMSO 43 1 180 9 2 0 0 KRCC1,RGPD1
SE_02_037200492 chr2:88015164-88019844 Sample_02_0372 Skeletal muscle RMS008 492 1 249 12 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_068800217 chr2:88015454-88025526 Sample_02_0688 Lung NCI-H211_no infection 217 4 361 16 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_097200848 chr2:88015845-88019818 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 848 1 224 12 2 0 0 KRCC1,RGPD1,SMYD1
SE_02_087500813 chr2:88016407-88064717 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 813 10 1149 59 6 71 316 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_103601510 chr2:88031369-88061985 Sample_02_1036 Mammary gland HCC70_XY018 1510 11 664 35 5 52 177 KRCC1,RGPD1,SMYD1,MIR4780
SE_02_001200070 chr2:88035199-88059176 Sample_02_0012 Kidney 786-O_non-targeting 70 7 510 25 4 34 150 KRCC1,RGPD1,SMYD1
Genomic distribution of SEs associated with RGPD1
Genome Browser

The strength of the tissue affected by the gene

Expression of RGPD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)