SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000108551
Gene: RASD1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr17:17494437-17496395 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_114500162 chr17:17347188-17447418 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 162 30 3087 228 11 37 401 NT5M,MED9,RASD1
SE_02_107800005 chr17:17350989-17542154 Sample_02_1078 Muscle RMS235_PAX3-NCOA1 5 73 5762 440 16 193 2023 PEMT,MED9,RASD1,NT5M
SE_02_107900010 chr17:17351070-17509453 Sample_02_1079 Muscle RMS246_PAX3-NCOA1 10 56 4793 340 13 186 1719 PEMT,MED9,RASD1,NT5M
SE_02_074000057 chr17:17352102-17472722 Sample_02_0740 Muscle RH3 57 34 3645 268 9 64 262 NT5M,MED9,RASD1
SE_02_003200114 chr17:17354652-17447852 Sample_02_0032 Pancreas pancreatic-islets-M 114 23 2836 203 8 34 262 MED9,RASD1
SE_02_004700083 chr17:17379511-17447724 Sample_02_0047 Pancreatic endoderm IIDP/donor790 83 11 2106 152 8 26 262 MED9,RASD1
SE_02_119100713 chr17:17379708-17447340 Sample_02_1191 Brain GBM25 713 16 2097 152 8 26 262 MED9,RASD1
SE_02_104701232 chr17:17383685-17456696 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1232 17 2265 165 7 42 262 MED9,RASD1
SE_02_037400065 chr17:17384441-17447695 Sample_02_0374 Skeletal muscle RMS209 65 12 1950 146 7 26 262 MED9,RASD1
SE_02_104601215 chr17:17387879-17462149 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1215 19 2276 180 7 38 262 MED9,RASD1
SE_02_088500082 chr17:17391898-17448963 Sample_02_0885 Blood NALM6_2 82 11 1754 147 7 29 262 MED9,RASD1
SE_02_117700349 chr17:17397863-17447493 Sample_02_1177 Brain GBM05 349 16 1517 126 7 22 262 MED9,RASD1
SE_02_040100220 chr17:17397922-17447512 Sample_02_0401 Mammary gland SUM159PT-T47D 220 11 1513 126 7 22 262 MED9,RASD1
SE_02_095300409 chr17:17398026-17447284 Sample_02_0953 Brain H3.3K27M_1840 409 16 1507 126 7 22 262 MED9,RASD1
SE_02_119200308 chr17:17398117-17447401 Sample_02_1192 Brain GBM26 308 15 1509 126 7 22 262 MED9,RASD1
SE_02_118800379 chr17:17398190-17447561 Sample_02_1188 Brain GBM18 379 19 1510 126 7 22 262 MED9,RASD1
SE_02_081601320 chr17:17398369-17448348 Sample_02_0816 Ovary Clear cell ovarian cancer 1320 18 1535 130 7 21 262 MED9,RASD1
SE_02_081500357 chr17:17398408-17446939 Sample_02_0815 Mammary gland SUM159PT 357 16 1497 124 7 15 262 MED9,RASD1
SE_02_102300058 chr17:17398601-17447658 Sample_02_1023 Mammary gland SUM159_BRD7_KO 58 14 1507 125 7 17 262 MED9,RASD1
SE_02_032601148 chr17:17405435-17448055 Sample_02_0326 Liver hepatocytes_d3 1148 7 1307 114 4 11 262 MED9,RASD1
SE_02_032700844 chr17:17405661-17448350 Sample_02_0327 Liver hepatocytes_d6 844 5 1311 115 4 14 262 MED9,RASD1
SE_02_102200031 chr17:17406867-17447163 Sample_02_1022 Mammary gland SUM159_WT 31 9 1242 102 4 7 262 MED9,RASD1
SE_02_032200743 chr17:17415273-17448053 Sample_02_0322 Colon Caco-2 743 5 1029 90 4 7 262 MED9,RASD1
SE_02_028600234 chr17:17433169-17448482 Sample_02_0286 Liver HuH7_IL-1alpha_1h 234 3 410 42 0 14 0 MED9,RASD1
SE_02_075300588 chr17:17433190-17447396 Sample_02_0753 Embryo ES-derived progenitors_FG type 588 6 377 37 0 7 0 MED9,RASD1
SE_02_076201580 chr17:17433580-17450043 Sample_02_0762 Podocyte podocyte_CTL 1580 3 430 43 0 14 0 MED9,RASD1
SE_02_094300252 chr17:17434216-17447271 Sample_02_0943 Brain LNZ308 252 6 346 34 0 7 0 MED9,RASD1
SE_02_004800914 chr17:17434482-17447853 Sample_02_0048 Embryo endodermal CyT49_HE 914 3 349 34 0 7 0 MED9,RASD1
SE_02_111500951 chr17:17434796-17448316 Sample_02_1115 Liver HepG2 951 9 357 34 0 8 0 MED9,RASD1
SE_02_077500413 chr17:17435982-17483910 Sample_02_0775 Pancreas EndoC-BH1_SE 413 16 1346 103 2 55 140 MED9,RASD1
SE_02_024200827 chr17:17439814-17463052 Sample_02_0242 Colon V481 827 3 659 56 0 23 0 MED9,RASD1
SE_02_043900840 chr17:17442327-17447479 Sample_02_0439 Bone Hu09 840 7 128 13 0 5 0 MED9,RASD1
SE_02_057300064 chr17:17461639-17511291 Sample_02_0573 Blood Nalm6_1 64 17 1475 96 4 143 1524 PEMT,MED9,RASD1
SE_02_088500165 chr17:17461772-17517171 Sample_02_0885 Blood NALM6_2 165 15 1616 111 5 143 1664 PEMT,MED9,RASD1
SE_02_073900248 chr17:17461789-17512423 Sample_02_0739 Blood Nalm6 248 13 1499 99 4 143 1546 PEMT,MED9,RASD1
SE_02_120500496 chr17:17464338-17515698 Sample_02_1205 Brain NB3 496 28 1483 96 4 143 1664 PEMT,MED9,RASD1
SE_02_069100059 chr17:17465276-17523967 Sample_02_0691 Lung NCI-H524_no infection 59 23 1720 121 5 142 1761 PEMT,MED9,RASD1
SE_02_095300278 chr17:17466541-17516221 Sample_02_0953 Brain H3.3K27M_1840 278 15 1440 95 4 141 1664 PEMT,MED9,RASD1
SE_02_149300115 chr17:17466977-17496258 Sample_02_1493 Skin SK-MEL-5_DMSO_6h 115 7 810 44 3 120 925 RASD1,MED9
SE_02_120300722 chr17:17467559-17515571 Sample_02_1203 Brain NB1 722 14 1387 92 4 140 1664 PEMT,MED9,RASD1
SE_02_122700507 chr17:17470541-17512241 Sample_02_1227 Bone marrow U266 507 14 1241 83 4 132 1524 PEMT,MED9,RASD1
SE_02_139200268 chr17:17471985-17497370 Sample_02_1392 Peripheral blood Mac-2A_ALK- 268 3 704 44 2 116 1031 RASD1,MED9
SE_02_138700395 chr17:17471987-17496350 Sample_02_1387 Peripheral blood Mac-1_ALK- 395 4 672 39 2 111 954 RASD1,MED9
SE_02_122300224 chr17:17472004-17512581 Sample_02_1223 Bone marrow KMS28BM 224 14 1199 79 3 132 1582 PEMT,MED9,RASD1
SE_02_143100793 chr17:17472077-17497068 Sample_02_1431 Blood T cell 793 2 692 41 2 116 1031 RASD1,MED9
SE_01_009700415 chr17:17476892-17568768 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 415 20 2760 263 8 115 1738 PEMT,MED9,RASD1
SE_02_158500167 chr17:17478823-17494355 Sample_02_1585 Blood SupB15 DMSO 167 11 447 21 0 39 413 MED9,RASD1
SE_02_158600173 chr17:17479178-17494300 Sample_02_1586 Blood SupB15 ACY1035 173 17 437 20 0 39 403 MED9,RASD1
SE_02_090400605 chr17:17479554-17571470 Sample_02_0904 Heart left ventricle_DCM_LV1028 605 26 2771 269 8 112 1621 PEMT,MED9,RASD1
SE_02_104301969 chr17:17479595-17511472 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1969 9 982 60 2 112 1384 PEMT,MED9,RASD1
SE_02_075800532 chr17:17479999-17518120 Sample_02_0758 Peripheral blood REH 532 11 1138 79 3 112 1524 PEMT,MED9,RASD1
SE_02_104600189 chr17:17483295-17580175 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 189 48 2951 297 8 111 1790 PEMT,MED9,RASD1
SE_02_104700701 chr17:17483301-17553316 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 701 21 2112 187 7 111 1621 PEMT,MED9,RASD1
SE_00_004600739 chr17:17483331-17507980 Sample_00_0046 Heart right ventricle_34y 739 11 765 50 2 104 1272 PEMT,MED9,RASD1
SE_02_092500065 chr17:17484333-17572236 Sample_02_0925 Heart fetal heart_PCW17_12570 65 19 2660 267 8 111 1621 PEMT,MED9,RASD1
SE_02_074700027 chr17:17484405-17591763 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 27 35 3259 316 9 110 2009 PEMT,MED9,RASD1
SE_02_132500573 chr17:17489033-17496372 Sample_02_1325 Hindbrain Hindbrain derived neural stem cells_NS19_H3.3K27M_WT 573 4 211 11 1 73 819 RASD1,MED9
SE_02_120401001 chr17:17491085-17515735 Sample_02_1204 Brain NB2 1001 9 752 55 2 87 1524 PEMT,MED9,RASD1
SE_02_066300041 chr17:17491394-17568866 Sample_02_0663 Thyroid TT 41 25 2364 243 8 85 1566 PEMT,MED9,RASD1
SE_02_119400552 chr17:17492246-17567802 Sample_02_1194 Brain GBM28 552 19 2303 239 8 76 1411 PEMT,MED9,RASD1
SE_02_046500400 chr17:17492600-17543502 Sample_02_0465 Adipose subcutaneous adipocytes 400 25 1549 146 5 76 1351 PEMT,MED9,RASD1
SE_02_092100036 chr17:17492787-17613803 Sample_02_0921 Heart embryonic heart_CS22 36 42 3583 349 10 74 1730 PEMT,MED9,RASD1
SE_02_118300294 chr17:17492943-17570387 Sample_02_1183 Brain GBM12 294 16 2349 246 8 74 1295 PEMT,MED9,RASD1
SE_02_119700346 chr17:17493012-17568663 Sample_02_1197 Brain GBM33 346 24 2298 242 8 74 1287 PEMT,MED9,RASD1
SE_02_118800336 chr17:17493156-17569038 Sample_02_1188 Brain GBM18 336 14 2307 243 8 74 1260 PEMT,MED9,RASD1
SE_02_128300138 chr17:17493189-17580356 Sample_02_1283 Lung NCI-H2107_p8-15 138 25 2657 284 8 74 1428 PEMT,MED9,RASD1
SE_02_119200518 chr17:17493190-17516125 Sample_02_1192 Brain GBM26 518 6 687 55 2 74 1162 PEMT,MED9,RASD1
SE_02_092400058 chr17:17493239-17572407 Sample_02_0924 Heart fetal heart_PCW10_12569 58 20 2398 256 8 74 1255 PEMT,RASD1,MED9
SE_02_092200072 chr17:17493330-17582026 Sample_02_0922 Heart fetal heart_PCW10_12434 72 22 2702 286 8 74 1420 PEMT,RASD1,MED9
SE_02_092300050 chr17:17493407-17580427 Sample_02_0923 Heart fetal heart_PCW10_12522 50 26 2647 284 8 74 1399 PEMT,RASD1,MED9
SE_02_118700830 chr17:17493555-17526773 Sample_02_1187 Brain GBM16 830 11 1018 87 3 74 1230 PEMT,RASD1,MED9
SE_02_097700425 chr17:17493677-17536600 Sample_02_0977 Brain 2089_H3.3K27WT 425 15 1307 125 4 74 1230 PEMT,RASD1,MED9
SE_02_097100596 chr17:17493684-17541811 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 596 11 1463 138 5 74 1230 PEMT,RASD1,MED9
SE_02_078500046 chr17:17493726-17516779 Sample_02_0785 Brain 2097 46 8 688 54 2 74 1133 PEMT,RASD1,MED9
SE_02_044100532 chr17:17493727-17517520 Sample_02_0441 Bone M112 532 8 722 59 3 74 1133 PEMT,RASD1,MED9
SE_02_108200391 chr17:17493910-17547733 Sample_02_1082 Retina retina 391 14 1613 158 6 74 1230 PEMT,RASD1,MED9
SE_02_068400219 chr17:17493987-17567651 Sample_02_0684 Lung DMS79 219 34 2243 237 8 74 1230 PEMT,RASD1,MED9
SE_02_128500056 chr17:17494324-17580745 Sample_02_1285 Lung NCI-H2171_p8-15 56 24 2637 281 8 74 1377 PEMT,RASD1,MED9
SE_02_077500129 chr17:17500136-17596972 Sample_02_0775 Pancreas EndoC-BH1_SE 129 40 2909 294 8 10 1138 PEMT,MED9,RASD1
SE_02_074600048 chr17:17502690-17609386 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 48 38 3170 312 8 10 1138 PEMT,MED9,RASD1
SE_02_110500243 chr17:17503053-17588782 Sample_02_1105 Brain NBL-S 243 37 2603 267 8 10 1008 PEMT,MED9,RASD1
SE_02_096100142 chr17:17503713-17540822 Sample_02_0961 Brain H3.3K27M_Tumor-derived cell-line_DIPGVI_c27_cells 142 6 1117 102 3 10 730 PEMT,MED9,RASD1
SE_02_138500121 chr17:17503856-17633995 Sample_02_1385 Other iPSCs 121 40 3935 381 9 10 1138 PEMT,RAI1,MED9,SMCR2,RASD1
SE_02_110600186 chr17:17503869-17584938 Sample_02_1106 Brain NGP 186 39 2453 262 8 10 1008 PEMT,MED9,RASD1
SE_02_052300135 chr17:17503961-17542562 Sample_02_0523 Lung NCIH810 135 18 1176 114 4 10 730 PEMT,MED9,RASD1
SE_02_001700781 chr17:17504292-17524417 Sample_02_0017 Embryo H9_ESC 781 4 623 51 2 10 730 PEMT,MED9,RASD1
SE_02_143201083 chr17:17504638-17585002 Sample_02_1432 Bone A673 STAG2 WT 1083 36 2432 261 8 10 1008 PEMT,MED9,RASD1
SE_02_127300574 chr17:17504779-17541577 Sample_02_1273 Cervix HeLa 574 9 1114 107 4 10 730 PEMT,MED9,RASD1
SE_02_138400503 chr17:17504786-17540666 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 503 13 1073 100 3 10 730 PEMT,MED9,RASD1
SE_02_110000212 chr17:17504925-17594078 Sample_02_1100 Brain COG-N-415 212 42 2676 274 8 10 1138 PEMT,MED9,RASD1
SE_02_095100450 chr17:17505745-17520601 Sample_02_0951 HMSCs hMSCs 450 8 445 35 2 10 542 PEMT,MED9,RASD1
SE_02_087400557 chr17:17505843-17521823 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 557 3 482 39 2 10 522 PEMT,MED9,RASD1
SE_02_101701510 chr17:17506132-17567497 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 1510 17 1855 206 7 10 546 PEMT,MED9,RASD1
SE_02_143300963 chr17:17506348-17585020 Sample_02_1433 Bone A673 STAG2 null 963 33 2377 259 7 9 769 PEMT,MED9,RASD1
SE_02_068700388 chr17:17506495-17585358 Sample_02_0687 Lung NCI-H146_no infection 388 13 2386 258 7 9 729 PEMT,MED9,RASD1
SE_02_027600315 chr17:17506598-17523694 Sample_02_0276 Retina FW15 315 4 516 45 1 9 451 PEMT,MED9,RASD1
SE_02_129100357 chr17:17506624-17542667 Sample_02_1291 Lung NCI-H889_p8-15 357 10 1091 110 3 9 451 PEMT,MED9,RASD1
SE_02_032601162 chr17:17522973-17540356 Sample_02_0326 Liver hepatocytes_d3 1162 4 507 53 1 0 0 PEMT,MED9,RASD1
SE_02_032700063 chr17:17523226-17593709 Sample_02_0327 Liver hepatocytes_d6 63 10 2115 227 6 0 408 PEMT,MED9,RASD1
SE_01_008200071 chr17:17523230-17584171 Sample_01_0082 Right lobe of liver right-lobe-of-liver 71 9 1840 212 6 0 278 PEMT,MED9,RASD1
SE_02_032500987 chr17:17523921-17540966 Sample_02_0325 Liver hepatocytes_d1 987 5 503 53 1 0 0 PEMT,MED9,RASD1
SE_00_001400013 chr17:17524761-17593510 Sample_00_0014 Heart left ventricle heart-left-ventricle 13 7 2059 224 6 0 408 PEMT,MED9,RASD1
SE_02_129200804 chr17:17524815-17540523 Sample_02_1292 Lung JHU-LX110-SCLC PDX 804 4 460 50 1 0 0 PEMT,MED9,RASD1
SE_01_009800332 chr17:17525039-17572307 Sample_01_0098 Heart left ventricle_51y 332 10 1416 172 5 0 0 PEMT,MED9,RASD1
SE_01_008100253 chr17:17525226-17577922 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 253 5 1588 194 5 0 169 PEMT,MED9,RASD1
SE_02_088800796 chr17:17525339-17571497 Sample_02_0888 Heart left ventricle_LV1160 796 12 1381 168 5 0 0 PEMT,MED9,RASD1
SE_02_089000493 chr17:17525730-17572351 Sample_02_0890 Heart left ventricle_LV1200 493 12 1394 171 5 0 0 PEMT,MED9,RASD1
SE_02_089200629 chr17:17525786-17572031 Sample_02_0892 Heart left ventricle_LV1215 629 15 1379 168 5 0 0 PEMT,MED9,RASD1
SE_02_089300547 chr17:17525832-17571650 Sample_02_0893 Heart left ventricle_LV1226 547 8 1368 167 5 0 0 PEMT,MED9,RASD1
SE_02_088900530 chr17:17525866-17572473 Sample_02_0889 Heart left ventricle_LV1183 530 11 1397 171 5 0 0 PEMT,MED9,RASD1
SE_02_089600964 chr17:17525872-17572645 Sample_02_0896 Heart left ventricle_LV1294 964 10 1402 172 5 0 0 PEMT,MED9,RASD1
SE_00_003400190 chr17:17525878-17592624 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 190 11 2008 221 6 0 408 PEMT,MED9,RASD1
SE_02_090001211 chr17:17525892-17571647 Sample_02_0900 Heart left ventricle_LV1452 1211 11 1367 167 5 0 0 PEMT,MED9,RASD1
SE_00_005201066 chr17:17525902-17553240 Sample_00_0052 Heart left ventricle 3y 1066 8 807 88 4 0 0 PEMT,MED9,RASD1
SE_00_002100674 chr17:17525913-17572651 Sample_00_0021 Lung lung_3y 674 5 1401 172 5 0 0 PEMT,MED9,RASD1
SE_02_089700589 chr17:17525944-17571976 Sample_02_0897 Heart left ventricle_LV1325 589 11 1377 168 5 0 0 PEMT,MED9,RASD1
SE_00_004600179 chr17:17525966-17572613 Sample_00_0046 Heart right ventricle_34y 179 19 1398 172 5 0 0 PEMT,MED9,RASD1
SE_02_089100688 chr17:17525991-17572392 Sample_02_0891 Heart left ventricle_LV1202 688 13 1391 171 5 0 0 PEMT,MED9,RASD1
SE_02_090200352 chr17:17525992-17571873 Sample_02_0902 Heart left ventricle_LV1558 352 14 1372 168 5 0 0 PEMT,MED9,RASD1
SE_02_089800829 chr17:17526001-17572238 Sample_02_0898 Heart left ventricle_LV1356 829 7 1383 170 5 0 0 PEMT,MED9,RASD1
SE_00_005700597 chr17:17526123-17553927 Sample_00_0057 Heart right ventricle 3y 597 16 832 93 4 0 0 PEMT,MED9,RASD1
SE_02_118200511 chr17:17535727-17569152 Sample_02_1182 Brain GBM11 511 9 1013 120 4 0 0 PEMT,RASD1
SE_02_016300154 chr17:17536488-17540122 Sample_02_0163 Prostate C4-2B_SR2211_24h 154 2 90 6 0 0 0 PEMT,RASD1
SE_01_002300116 chr17:17536612-17607792 Sample_01_0023 Embryo cardiac-muscle-cell 116 10 2075 213 5 0 408 PEMT,RASD1
SE_02_016200391 chr17:17536634-17540086 Sample_02_0162 Prostate C4-2B_vehicle_24h 391 2 86 6 0 0 0 PEMT,RASD1
SE_02_020800297 chr17:17536870-17540585 Sample_02_0208 Stomach YCC3 297 3 97 6 0 0 0 PEMT,RASD1
SE_02_078500086 chr17:17544964-17568677 Sample_02_0785 Brain 2097 86 10 732 90 3 0 0 PEMT,RASD1
Genomic distribution of SEs associated with RASD1
Genome Browser

The strength of the tissue affected by the gene

Expression of RASD1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)