Gene overview
| Strategies/Algorithm: | proximal | Ensembl ID: | ENSG00000092621 |
| Gene: | PHGDH | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr1:119648411-119744218 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_144500861 | chr1:119616945-119677138 |
Sample_02_1445 | Adipose | SW872_TAZ4SA | 861 | 8 | 1495 | 146 | 6 | 189 | 904 | ZNF697,PHGDH,LINC00622 |
| SE_02_003300581 | chr1:119626654-119676505 |
Sample_02_0033 | Pancreas | pancreatic-islets-F | 581 | 5 | 1184 | 95 | 5 | 95 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_155400743 | chr1:119626720-119662436 |
Sample_02_1554 | Gastrointestinal Stromal | GIST-3_KIT e11 | 743 | 12 | 856 | 53 | 2 | 88 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_018400034 | chr1:119626940-119676321 |
Sample_02_0184 | Skin | SKMEL30 | 34 | 14 | 1171 | 93 | 5 | 94 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_156400061 | chr1:119627213-119663212 |
Sample_02_1564 | Gastrointestinal Stromal | GIST-430 | 61 | 14 | 852 | 53 | 2 | 86 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_018300016 | chr1:119628834-119677713 |
Sample_02_0183 | Skin | SKMEL2 | 16 | 7 | 1132 | 95 | 5 | 89 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_018500077 | chr1:119630789-119677815 |
Sample_02_0185 | Skin | UACC257 | 77 | 12 | 1092 | 94 | 5 | 84 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_018100161 | chr1:119630924-119676443 |
Sample_02_0181 | melanoma | COLO679 | 161 | 10 | 1071 | 94 | 5 | 84 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_149300094 | chr1:119630970-119676457 |
Sample_02_1493 | Skin | SK-MEL-5_DMSO_6h | 94 | 14 | 1069 | 94 | 5 | 84 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_004000681 | chr1:119631093-119676344 |
Sample_02_0040 | Embryo | PFG | 681 | 5 | 1066 | 92 | 5 | 84 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_154600133 | chr1:119632541-119662783 |
Sample_02_1546 | Gastrointestinal Stromal | GIST-430/654 | 133 | 18 | 706 | 50 | 2 | 68 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_018000450 | chr1:119638081-119676448 |
Sample_02_0180 | melanoma | CJM | 450 | 5 | 895 | 79 | 4 | 56 | 110 | ZNF697,LOC644242,PHGDH |
| SE_02_152200983 | chr1:119638106-119688030 |
Sample_02_1522 | Skin | A375 RTKi | 983 | 11 | 1147 | 96 | 4 | 56 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_00_005300771 | chr1:119644023-119698163 |
Sample_00_0053 | Embryo | trophoblast cell originated from H1 | 771 | 11 | 1254 | 107 | 4 | 51 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_071200821 | chr1:119645287-119676249 |
Sample_02_0712 | Pancreas | BxPC3_sgNEG | 821 | 7 | 703 | 66 | 4 | 48 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_02_132100867 | chr1:119645352-119676157 |
Sample_02_1321 | Connective Tissue | HT1080_FUS-DDIT3 | 867 | 5 | 701 | 66 | 4 | 48 | 110 | ZNF697,PHGDH,LINC00622 |
| SE_01_005800903 | chr1:119659633-119688436 |
Sample_01_0058 | Prostate | PC-3 | 903 | 3 | 651 | 62 | 3 | 9 | 0 | PHGDH,ZNF697 |
| SE_02_065201181 | chr1:119671837-119687983 |
Sample_02_0652 | Tracheobronchial epithelial | HTBE_H3N2_mock | 1181 | 8 | 370 | 40 | 1 | 3 | 0 | PHGDH,ZNF697 |
| SE_02_112101014 | chr1:119673418-119688780 |
Sample_02_1121 | Neonatal foreskin | keratinocytes_Mi2KD | 1014 | 8 | 348 | 35 | 1 | 3 | 0 | PHGDH,ZNF697 |
Genomic distribution of SEs associated with PHGDH