SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000163956
Gene: LRPAP1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr4:3503612-3532446 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_039600379 chr4:3406994-3489822 Sample_02_0396 Skin NHEK-D 379 26 3378 256 14 245 4668 RGS12,HGFAC,DOK7,LRPAP1
SE_02_102900288 chr4:3425143-3503441 Sample_02_1029 Colon HCT116 288 27 3498 305 7 244 4599 HGFAC,DOK7,RGS12,LRPAP1
SE_02_085300064 chr4:3430695-3503256 Sample_02_0853 Mammary gland MCF7L-TamR 64 20 3286 299 7 217 4251 HGFAC,DOK7,RGS12,LRPAP1
SE_02_115100131 chr4:3433223-3499327 Sample_02_1151 Mammary gland MCF-7_UNTR 131 22 2968 264 7 194 3495 HGFAC,DOK7,RGS12,LRPAP1
SE_02_027500322 chr4:3434706-3495532 Sample_02_0275 Retina FW14 322 6 2700 238 7 191 3380 RGS12,HGFAC,DOK7,LRPAP1
SE_02_085200081 chr4:3434819-3498101 Sample_02_0852 Mammary gland MCF7L-P 81 13 2831 256 7 193 3495 HGFAC,DOK7,RGS12,LRPAP1
SE_02_115900080 chr4:3434819-3498101 Sample_02_1159 Mammary gland MCF7 80 13 2831 256 7 193 3495 HGFAC,DOK7,RGS12,LRPAP1
SE_02_042400264 chr4:3435993-3488868 Sample_02_0424 Colon SW620 264 6 2223 191 7 158 2715 RGS12,HGFAC,DOK7,LRPAP1
SE_02_081800440 chr4:3436428-3492782 Sample_02_0818 Ovary High-grade serous ovarian cancer 440 14 2427 210 7 162 2891 HGFAC,DOK7,RGS12,LRPAP1
SE_02_076600349 chr4:3451411-3487088 Sample_02_0766 Ovary PEO1 349 20 1421 164 3 83 819 DOK7,HGFAC,LRPAP1
SE_02_056600082 chr4:3459098-3497450 Sample_02_0566 Mammary gland MCF7L-P_E2_24h 82 16 1830 215 3 117 1599 DOK7,HGFAC,LRPAP1
SE_02_052600221 chr4:3459791-3487341 Sample_02_0526 Mammary gland MCF7 TRPS1 KO 221 13 1187 151 3 83 819 DOK7,HGFAC,LRPAP1
SE_02_062600104 chr4:3459813-3489266 Sample_02_0626 Mammary gland WS8_E2 104 9 1293 161 3 83 819 DOK7,HGFAC,LRPAP1
SE_02_062700171 chr4:3459820-3488581 Sample_02_0627 Mammary gland WS8_VEH 171 10 1253 154 3 83 819 DOK7,HGFAC,LRPAP1
SE_02_052700199 chr4:3459907-3492005 Sample_02_0527 Mammary gland MCF7_WT 199 21 1430 168 3 87 942 DOK7,HGFAC,LRPAP1
SE_02_000200300 chr4:3459960-3488901 Sample_02_0002 Mammary gland MCF-7_10Gygamma_2.5h 300 4 1268 158 3 83 819 DOK7,LRPAP1,HGFAC
SE_02_056300214 chr4:3460160-3493593 Sample_02_0563 Mammary gland MCF7L-P_0h 214 10 1557 181 3 111 1203 DOK7,HGFAC,LRPAP1
SE_02_052200081 chr4:3460170-3494829 Sample_02_0522 Colon SW620 81 10 1647 191 3 114 1484 DOK7,HGFAC,LRPAP1
SE_02_062500243 chr4:3460190-3488077 Sample_02_0625 Mammary gland WS8_4OHT 243 11 1219 149 2 83 819 DOK7,HGFAC,LRPAP1
SE_02_005200125 chr4:3460210-3486474 Sample_02_0052 Mammary gland MCF-7_E2 125 7 1130 145 2 83 819 DOK7,LRPAP1,HGFAC
SE_02_056400104 chr4:3460226-3492250 Sample_02_0564 Mammary gland MCF7L-P_E2_1h 104 14 1436 166 2 87 942 DOK7,HGFAC,LRPAP1
SE_02_024200766 chr4:3460266-3487327 Sample_02_0242 Colon V481 766 3 1176 148 2 83 819 DOK7,LRPAP1,HGFAC
SE_02_005100168 chr4:3460468-3486517 Sample_02_0051 Mammary gland MCF-7_EtOH 168 7 1122 145 2 83 819 DOK7,LRPAP1,HGFAC
SE_02_024000420 chr4:3460490-3486468 Sample_02_0240 Colon V429_2 420 6 1118 143 2 83 819 DOK7,LRPAP1,HGFAC
SE_02_056500096 chr4:3460576-3487865 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 96 7 1194 147 2 83 819 DOK7,HGFAC,LRPAP1
SE_02_036700127 chr4:3460716-3502704 Sample_02_0367 Skeletal muscle NS129 127 7 2074 247 2 125 2008 DOK7,LRPAP1,HGFAC
SE_02_093500218 chr4:3460718-3492541 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 218 7 1450 167 2 87 942 DOK7,HGFAC,LRPAP1
SE_01_009400768 chr4:3460723-3497380 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 768 9 1784 208 2 117 1599 DOK7,HGFAC,LRPAP1
SE_01_008100399 chr4:3460796-3504216 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 399 6 2146 260 2 125 2143 DOK7,LRPAP1,HGFAC
SE_02_049600029 chr4:3460877-3487498 Sample_02_0496 Mammary gland C49R 29 9 1164 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_036800254 chr4:3460901-3498268 Sample_02_0368 Skeletal muscle NS134 254 7 1820 215 2 117 1599 DOK7,LRPAP1,HGFAC
SE_02_088900897 chr4:3460938-3503337 Sample_02_0889 Heart left ventricle_LV1183 897 12 2088 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_00_002100304 chr4:3460949-3503419 Sample_00_0021 Lung lung_3y 304 7 2092 252 2 124 2008 DOK7,LRPAP1,HGFAC
SE_02_089801106 chr4:3460985-3486641 Sample_02_0898 Heart left ventricle_LV1356 1106 12 1112 145 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_074700540 chr4:3460996-3498190 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 540 12 1813 215 2 117 1599 DOK7,HGFAC,LRPAP1
SE_02_091100471 chr4:3461004-3503439 Sample_02_0911 Heart left ventricle_DCM_LV1290 471 16 2095 254 2 124 2013 DOK7,HGFAC,LRPAP1
SE_02_089200845 chr4:3461013-3488105 Sample_02_0892 Heart left ventricle_LV1215 845 9 1196 148 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_090000882 chr4:3461031-3503289 Sample_02_0900 Heart left ventricle_LV1452 882 14 2086 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_092100903 chr4:3461035-3497367 Sample_02_0921 Heart embryonic heart_CS22 903 9 1774 208 2 116 1599 DOK7,HGFAC,LRPAP1
SE_02_090400837 chr4:3461052-3502078 Sample_02_0904 Heart left ventricle_DCM_LV1028 837 11 2035 241 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_090100614 chr4:3461058-3503283 Sample_02_0901 Heart left ventricle_LV1471 614 11 2086 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_092400574 chr4:3461062-3498134 Sample_02_0924 Heart fetal heart_PCW10_12569 574 8 1808 214 2 117 1599 DOK7,HGFAC,LRPAP1
SE_02_092300698 chr4:3461079-3498347 Sample_02_0923 Heart fetal heart_PCW10_12522 698 12 1820 215 2 117 1599 DOK7,HGFAC,LRPAP1
SE_02_089000595 chr4:3461086-3486952 Sample_02_0890 Heart left ventricle_LV1200 595 8 1133 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_00_003400614 chr4:3461087-3488552 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 614 5 1219 150 2 82 819 DOK7,LRPAP1,HGFAC
SE_00_004600203 chr4:3461087-3503320 Sample_00_0046 Heart right ventricle_34y 203 18 2085 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_090200896 chr4:3461107-3487466 Sample_02_0902 Heart left ventricle_LV1558 896 11 1159 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_092201070 chr4:3461124-3494536 Sample_02_0922 Heart fetal heart_PCW10_12434 1070 8 1596 189 2 112 1445 DOK7,HGFAC,LRPAP1
SE_02_088800926 chr4:3461153-3487934 Sample_02_0888 Heart left ventricle_LV1160 926 11 1182 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_089300926 chr4:3461163-3486762 Sample_02_0893 Heart left ventricle_LV1226 926 8 1116 146 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_090901213 chr4:3461177-3487458 Sample_02_0909 Heart left ventricle_DCM_LV1264 1213 8 1158 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_00_005200243 chr4:3461177-3503256 Sample_00_0052 Heart left ventricle 3y 243 16 2083 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_092500587 chr4:3461178-3498076 Sample_02_0925 Heart fetal heart_PCW17_12570 587 6 1804 214 2 117 1599 DOK7,HGFAC,LRPAP1
SE_01_009700438 chr4:3461180-3502866 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 438 6 2065 248 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_089400506 chr4:3461190-3487327 Sample_02_0894 Heart left ventricle_LV1248 506 10 1153 147 2 82 819 DOK7,HGFAC,LRPAP1
SE_02_091900543 chr4:3461200-3503339 Sample_02_0919 Heart left ventricle_DCM_LV1532 543 12 2084 250 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_090500792 chr4:3461208-3503040 Sample_02_0905 Heart left ventricle_DCM_LV1033 792 10 2069 249 2 124 2008 DOK7,HGFAC,LRPAP1
SE_02_091001184 chr4:3461237-3498159 Sample_02_0910 Heart left ventricle_DCM_LV1275 1184 11 1807 215 2 117 1599 DOK7,HGFAC,LRPAP1
SE_02_088700544 chr4:3461289-3503505 Sample_02_0887 Heart left ventricle_LV1121 544 11 2097 256 2 124 2022 DOK7,HGFAC,LRPAP1
SE_02_087400340 chr4:3465079-3487040 Sample_02_0874 Colon HCT116_siGLIS2.2-5FU 340 5 1010 135 2 49 612 DOK7,HGFAC,LRPAP1
SE_01_004700101 chr4:3465515-3495016 Sample_01_0047 Embryo mid-neurogenesis-radial-glial-cells 101 4 1487 179 2 80 1277 DOK7,LRPAP1,HGFAC
SE_02_155500323 chr4:3471282-3501296 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 323 9 1562 175 2 83 1706 DOK7,HGFAC,LRPAP1
SE_02_138400563 chr4:3473325-3500971 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 563 7 1448 155 0 82 1606 DOK7,HGFAC,LRPAP1
SE_01_011500618 chr4:3479026-3495079 Sample_01_0115 Skeletal Muscle myotube originated from skeletal muscle myoblast 618 7 861 89 0 56 969 DOK7,HGFAC,LRPAP1
SE_02_035500449 chr4:3480665-3486728 Sample_02_0355 Colon HCT15 449 3 270 35 0 22 304 DOK7,LRPAP1,HGFAC
SE_02_049100445 chr4:3480763-3487585 Sample_02_0491 Pharyng Detroit 562-Control 445 3 314 35 0 22 304 DOK7,HGFAC,LRPAP1
SE_02_049200451 chr4:3480767-3488192 Sample_02_0492 Pharyng Detroit 562_LPS 451 5 348 37 0 22 304 DOK7,HGFAC,LRPAP1
SE_02_137100785 chr4:3483341-3487012 Sample_02_1371 Pancreas Patu899S-untreated 785 1 186 27 0 22 304 DOK7,HGFAC,LRPAP1
SE_02_130500605 chr4:3483487-3487033 Sample_02_1305 Pancreas Gemcitabine resistant L3.6pl 605 1 184 27 0 22 304 DOK7,HGFAC,LRPAP1
SE_02_010600543 chr4:3484027-3497972 Sample_02_0106 Skin NHEK_M 543 4 813 93 0 43 1084 DOK7,LRPAP1,HGFAC
SE_02_099300779 chr4:3553330-3573148 Sample_02_0993 Blood MOLM-13_empty 779 7 761 26 0 2 0 LINC00955,LRPAP1
SE_02_124400304 chr4:3563706-3675608 Sample_02_1244 Brain KCNR_ATRA 304 19 4599 192 1 72 626 LINC00955,LOC100133461,LRPAP1
SE_02_021500057 chr4:3576775-3611590 Sample_02_0215 Skin NHEK_siGRHL3 57 9 1352 75 1 31 486 LRPAP1
SE_02_123600307 chr4:3581167-3608627 Sample_02_1236 Skin MKL1_virus_positive 307 8 1116 64 0 21 371 LINC00955,LRPAP1
Genomic distribution of SEs associated with LRPAP1
Genome Browser

The strength of the tissue affected by the gene

Expression of LRPAP1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)