SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: LOC253039 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_028600318 chr9:120765099-120794631 Sample_02_0286 Liver HuH7_IL-1alpha_1h 318 4 735 43 0 102 485 FBXW2,LOC100288842,PSMD5,LOC253039
SE_02_032100071 chr9:120855317-120945686 Sample_02_0321 Peripheral blood MO1043_ICN1_HA_H3K27Ac_b 71 7 2239 299 23 76 3681 PHF19,TRAF1,PSMD5,LOC253039
SE_02_039601227 chr9:120855815-120878073 Sample_02_0396 Skin NHEK-D 1227 6 530 43 1 38 2159 PHF19,TRAF1,PSMD5,LOC253039
SE_02_011900026 chr9:120856390-120945127 Sample_02_0119 Haematopoietic and lymphoid tissue PFEIFFER 26 50 2205 295 23 64 3503 PHF19,TRAF1,PSMD5,LOC253039
SE_02_012600036 chr9:120862026-120938284 Sample_02_0126 Blood Induced-regulatory-T-cells_DMSO 36 12 1917 259 21 46 2876 PHF19,TRAF1,PSMD5,LOC253039
SE_02_012800078 chr9:120862058-120936728 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 78 23 1883 252 20 44 2862 PHF19,TRAF1,PSMD5,LOC253039
SE_01_003900033 chr9:120865074-120879575 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 33 4 344 34 2 9 1155 PHF19,TRAF1,PSMD5,LOC253039,LOC100288842,PSD5
SE_01_009200529 chr9:120865204-120895468 Sample_01_0092 Vagina vagina 529 5 725 92 5 9 1155 PHF19,TRAF1,PSMD5,LOC253039
SE_02_026000390 chr9:120865411-120879109 Sample_02_0260 Lung NCI-H1299_EGFP-NEO_reporter_cells_SB939 390 5 321 30 2 9 1155 PHF19,TRAF1,PSMD5,LOC253039
SE_01_007300876 chr9:120867295-120897624 Sample_01_0073 Coronary artery coronary-artery 876 6 723 96 5 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_01_007500574 chr9:120867455-120897699 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 574 7 723 92 5 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_01_007000092 chr9:120867455-120967959 Sample_01_0070 Ascending aorta ascending-aorta 92 9 2454 343 28 77 2671 PHF19,TRAF1,C5,PSMD5,LOC253039
SE_02_039500311 chr9:120867488-120879422 Sample_02_0395 Mammary gland BT-549 311 2 269 26 2 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_01_008600074 chr9:120867495-120967761 Sample_01_0086 Thoracic aorta thoracic-aorta 74 7 2452 343 28 77 2671 PHF19,TRAF1,C5,PSMD5,LOC253039
SE_01_008500340 chr9:120867536-120943446 Sample_01_0085 Stomach stomach 340 7 1884 266 22 36 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_01_009100748 chr9:120867539-120895355 Sample_01_0091 Uterus uterus 748 4 653 84 5 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_025900359 chr9:120867649-120894000 Sample_02_0259 Lung NCI-H1299_EGFP-NEO_reporter_cells_SAHA 359 3 627 80 5 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_01_006100239 chr9:120867657-120877889 Sample_01_0061 Prostate RWPE1 239 3 228 17 1 4 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_042400245 chr9:120867670-120917753 Sample_02_0424 Colon SW620 245 8 1275 169 12 4 1917 PHF19,TRAF1,PSMD5,LOC253039
SE_01_007900250 chr9:120867725-120936988 Sample_01_0079 Peyers patch Peyers-patch 250 8 1732 238 20 34 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_01_001200672 chr9:120867750-120879349 Sample_01_0012 Lung A549_dexamethasone_1h 672 2 259 26 2 1 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_021300082 chr9:120867809-120945299 Sample_02_0213 Burkitts lymphoma of the left maxilla Raji_JQ1 82 8 1921 275 23 33 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_02_014400609 chr9:120867830-120898347 Sample_02_0144 Peripheral blood MV411_DMSO 609 4 725 97 6 1 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_022200408 chr9:120867868-120898963 Sample_02_0222 Blood DU-528 408 3 733 98 6 1 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_035300856 chr9:120867884-120878837 Sample_02_0353 Colon HT29 856 3 236 20 2 1 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_035700039 chr9:120867917-120898979 Sample_02_0357 Colon Colo320 39 11 730 98 6 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_025800400 chr9:120867929-120894120 Sample_02_0258 Lung NCI-H1299_EGFP-NEO_reporter_cells_DMSO 400 3 617 81 5 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_025600672 chr9:120867980-120910374 Sample_02_0256 Peripheral blood MV411 672 5 1057 143 9 0 1532 PHF19,TRAF1,PSMD5,LOC253039
SE_02_034200591 chr9:120867994-120910415 Sample_02_0342 Liver HSPCs_F0 591 8 1058 143 9 0 1532 PHF19,TRAF1,PSMD5,LOC253039
SE_02_027400763 chr9:120868010-120878376 Sample_02_0274 Endometriosis hTERT_KD 763 2 225 20 2 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_033700610 chr9:120868016-120879107 Sample_02_0337 Haematopoietic and lymphoid tissue MV411_untreat 610 2 240 24 2 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_01_003700648 chr9:120868020-120895454 Sample_01_0037 Liver hepatocyte 648 5 635 84 5 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_005400842 chr9:120868031-120878532 Sample_02_0054 Lung IMR-90_DMSO_1 842 2 227 20 2 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_035400340 chr9:120868034-120897558 Sample_02_0354 Colon Colo205 340 7 694 92 5 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_024700465 chr9:120868045-120917036 Sample_02_0247 Haematopoietic and lymphoid tissue MOLT4_2 465 8 1237 169 12 0 1917 PHF19,TRAF1,PSMD5,LOC253039
SE_02_022600137 chr9:120868058-120937944 Sample_02_0226 Blood KOPTK1 137 10 1735 242 21 32 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_02_035800372 chr9:120868064-120893661 Sample_02_0358 Colon LS180 372 4 602 80 5 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_018300036 chr9:120868176-120952600 Sample_02_0183 Skin SKMEL2 36 16 2081 293 24 40 2419 PHF19,TRAF1,C5,PSMD5,LOC253039
SE_02_024100750 chr9:120868179-120897296 Sample_02_0241 Colon V456 750 7 685 92 5 0 889 PHF19,TRAF1,PSMD5,LOC253039
SE_02_002600045 chr9:120868193-120937892 Sample_02_0026 Blood CD4donorE 45 19 1731 241 21 32 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_02_005900166 chr9:120868221-120917233 Sample_02_0059 Haematopoietic and lymphoid tissue blood WT/Jurkat 166 10 1242 169 12 0 1917 PHF19,TRAF1,PSMD5,LOC253039
SE_02_006000200 chr9:120868225-120917300 Sample_02_0060 Haematopoietic and lymphoid tissue blood WT-11bp/Jurkat 200 7 1244 169 12 0 1917 PHF19,TRAF1,PSMD5,LOC253039
SE_02_005800055 chr9:120868297-120937961 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 55 12 1730 242 21 32 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_02_003400304 chr9:120868363-120910456 Sample_02_0034 Peripheral blood CUTLL1_GSI 304 8 1050 143 9 0 1532 PHF19,TRAF1,PSMD5,LOC253039
SE_02_023300067 chr9:120868407-120936759 Sample_02_0233 Tonsil Th1 67 15 1705 237 20 30 2364 PHF19,TRAF1,PSMD5,LOC253039
SE_02_012100223 chr9:120868657-120906654 Sample_02_0121 Haematopoietic and lymphoid tissue SUDHL-4 223 6 936 126 7 0 1430 PHF19,TRAF1,PSMD5,LOC253039
SE_02_028800199 chr9:120868801-120945307 Sample_02_0288 Tonsil CB5_H3K27Ac 199 8 1894 274 23 32 2301 PHF19,TRAF1,PSMD5,LOC253039
SE_02_036000116 chr9:120869001-120898191 Sample_02_0360 Haematopoietic and lymphoid tissue SEM 116 6 692 94 6 0 743 PHF19,TRAF1,PSMD5,LOC253039
SE_02_032000154 chr9:120869003-120945511 Sample_02_0320 Peripheral blood MO1043_ICN1_HA_H3K27Ac_a 154 10 1896 273 23 32 2217 PHF19,TRAF1,PSMD5,LOC253039
SE_01_005300511 chr9:120870081-120906711 Sample_01_0053 Haematopoietic and lymphoid tissue OCI-LY1 511 8 910 123 7 0 1063 PHF19,TRAF1,PSMD5,LOC253039
SE_00_002000483 chr9:120871718-120879381 Sample_00_0020 Large intestine large-intestine_108d 483 1 164 18 2 0 399 PHF19,TRAF1,PSMD5,LOC253039
SE_00_003600328 chr9:120872042-120894708 Sample_00_0036 Small intestine small-intestine_108days 328 5 526 69 5 0 399 PHF19,TRAF1,PSMD5,LOC253039
SE_02_013100945 chr9:120872058-120880509 Sample_02_0131 Lung 1015_PT 945 1 172 16 2 0 399 PHF19,TRAF1,PSMD5,LOC253039
SE_01_005500048 chr9:120872091-120907163 Sample_01_0055 Haematopoietic and lymphoid tissue OCI-LY7 48 5 874 116 7 0 952 PHF19,TRAF1,PSMD5,LOC253039
SE_02_017600046 chr9:120872726-120953853 Sample_02_0176 Peripheral blood LOUCY 46 13 2011 285 24 44 1987 PHF19,TRAF1,C5,PSMD5,LOC253039
SE_01_004400126 chr9:120872743-120911183 Sample_01_0044 Haematopoietic and lymphoid tissue Loucy 126 5 955 133 9 0 1045 PHF19,TRAF1,PSMD5,LOC253039
SE_02_022300120 chr9:120873567-120906548 Sample_02_0223 Haematopoietic and lymphoid tissue MOLT4_1 120 3 816 113 7 0 952 PHF19,TRAF1,PSMD5,LOC253039
SE_02_022100202 chr9:120873734-120906366 Sample_02_0221 Blood CCRF-CEM 202 4 807 112 7 0 952 PHF19,TRAF1,PSMD5,LOC253039
SE_02_003100199 chr9:120874111-120917270 Sample_02_0031 Haematopoietic and lymphoid tissue blood Jurkat 199 6 1098 155 11 0 1374 PHF19,TRAF1,PSMD5,LOC253039
SE_02_034800186 chr9:120874280-120937856 Sample_02_0348 Peripheral blood CUTLL1_wild-type 186 10 1583 226 20 32 1793 PHF19,TRAF1,PSMD5,LOC253039
SE_00_004500045 chr9:120874513-120937508 Sample_00_0045 Thymus thymus 45 12 1569 223 19 32 1756 PHF19,TRAF1,PSMD5,LOC253039
SE_00_003900072 chr9:120874679-120937070 Sample_00_0039 Spleen spleen_3y 72 8 1561 223 19 30 1721 PHF19,TRAF1,PSMD5,LOC253039
SE_02_022500458 chr9:120874881-120907086 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 458 4 808 113 6 0 768 PHF19,TRAF1,PSMD5,LOC253039
SE_02_034900192 chr9:120874922-120938131 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 192 12 1581 228 20 32 1683 PHF19,TRAF1,PSMD5,LOC253039
SE_00_002700078 chr9:120875104-120937023 Sample_00_0027 Blood natural-killer-cell 78 9 1555 223 19 30 1681 PHF19,TRAF1,PSMD5,LOC253039
SE_00_003500598 chr9:120875355-120936752 Sample_00_0035 Sigmoid colon sigmoid-colon 598 9 1547 222 19 30 1681 PHF19,TRAF1,PSMD5,LOC253039
SE_02_002200038 chr9:120876583-120938130 Sample_02_0022 Blood CD8donorA 38 24 1551 227 20 32 1681 PHF19,TRAF1,PSMD5,LOC253039
SE_02_013200493 chr9:120887828-120898175 Sample_02_0132 Lung 1015_CL 493 1 260 39 3 0 0 TRAF1,PSMD5,PHF19,LOC253039
SE_02_012700572 chr9:120887937-120897927 Sample_02_0127 Blood Induced-regulatory-T-cells_CPI-703 572 1 250 36 2 0 0 TRAF1,PSMD5,PHF19,LOC253039
SE_02_013100524 chr9:120887937-120897927 Sample_02_0131 Lung 1015_PT 524 1 250 36 2 0 0 TRAF1,PSMD5,PHF19,LOC253039
SE_02_014800046 chr9:120888198-120937025 Sample_02_0148 Blood CD8_T_cells 46 11 1248 177 17 30 1475 TRAF1,PSMD5,PHF19,LOC253039
SE_02_021601006 chr9:120888661-120919973 Sample_02_0216 Skin NHEK_scramble 1006 5 837 111 9 0 1028 TRAF1,PSMD5,PHF19,LOC253039
SE_02_002300043 chr9:120889844-120935623 Sample_02_0023 Blood CD8donorC 43 25 1172 165 15 23 1475 TRAF1,PSMD5,PHF19,LOC253039
SE_02_023200483 chr9:120891957-120936933 Sample_02_0232 Tonsil ILC3 483 8 1152 164 15 30 1475 TRAF1,PSMD5,PHF19,LOC253039
SE_02_038700185 chr9:120892469-120944992 Sample_02_0387 Lymph node CD19+_B_cells_nhl_FL1-2 185 9 1333 200 18 32 1475 TRAF1,PSMD5,PHF19,LOC253039
SE_02_002400133 chr9:120892488-120936436 Sample_02_0024 Blood CD56+ Natural Killer cells donor A 133 19 1132 163 15 27 1475 TRAF1,PSMD5,PHF19,LOC253039
Genomic distribution of SEs associated with LOC253039
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC253039

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)