SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID:
Gene: LOC100288570 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_080800112 chr2:109870877-109930191 Sample_02_0808 Ovary RMG1_ARID1A KO 112 30 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_049900875 chr2:109880895-109930202 Sample_02_0499 Fetal lung IMR90 IR Senescence 875 16 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_111300528 chr2:109881222-109930011 Sample_02_1113 Bone U2OS 528 16 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_138800111 chr2:109887956-109924823 Sample_02_1388 Peripheral blood JB6_ALK+ 111 14 15 1 0 112 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_077000367 chr2:109887977-109937115 Sample_02_0770 Ovary OVCA429_shLuc 367 27 15 1 0 116 827 LIMS3L,LIMS3-LOC440895,LOC100288570,LINC01123
SE_02_076900491 chr2:109888005-109928239 Sample_02_0769 Ovary HEYA8 491 21 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_050000670 chr2:109888085-109930129 Sample_02_0500 Fetal lung IMR90_#2 670 19 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_136000331 chr2:109888094-109937028 Sample_02_1360 Bladder UMUC1_sonic_pSIN-puro_EV 331 21 15 1 0 116 820 LIMS3L,LIMS3-LOC440895,LOC100288570,LINC01123
SE_02_058500295 chr2:109888134-109926515 Sample_02_0585 Umbilical vein HUVEC 0hour 295 18 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_017600964 chr2:109888153-109929815 Sample_02_0176 Peripheral blood LOUCY 964 12 15 1 0 116 625 LIMS3,LIMS3-LOC440895,LOC100288570
SE_02_156900128 chr2:109888193-109929428 Sample_02_1569 Endothelial Endothelial cells 128 9 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_095000674 chr2:109888223-109926587 Sample_02_0950 Umbilical vein HUVEC_WT 674 19 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_087700323 chr2:109888274-109923121 Sample_02_0877 Muscle SMS-CTR_CASZ1b_Dox 323 10 10 1 0 107 579 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_083100417 chr2:109888280-109925160 Sample_02_0831 Umblical vein HUVECs_TNF0min 417 22 15 1 0 112 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_052100101 chr2:109888386-109930175 Sample_02_0521 Colon SW480 101 12 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_156800599 chr2:109888392-109930008 Sample_02_1568 Heart Cardiac progenitor cells 599 6 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_137800978 chr2:109888474-109906753 Sample_02_1378 Pancreas Pancreatic_tumor_associated_fibroblasts_CAF08_untreated 978 6 0 0 0 49 299 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_083901178 chr2:109888587-109906765 Sample_02_0839 Embryo hNPCs_K755R/+ 1178 3 0 0 0 49 299 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_111500871 chr2:109888597-109930017 Sample_02_1115 Liver HepG2 871 16 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_136200851 chr2:109888617-109929696 Sample_02_1362 Bladder UMUC1_sonic_pSIN-puro H1146A/E1148A-mutant UTX 851 17 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_071300424 chr2:109888635-109930010 Sample_02_0713 Pancreas BxPC3_sgTP63 424 23 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_072700843 chr2:109888649-109929965 Sample_02_0727 Fetal lung IMR90_Etoposide 843 10 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_077100328 chr2:109888671-109928434 Sample_02_0771 Ovary OVCA429_shGRHL2 328 21 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_087901570 chr2:109888700-109906777 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1570 3 0 0 0 49 299 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_127901271 chr2:109888717-109930137 Sample_02_1279 Bone Mesenchymal stem cells 1271 13 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_076700314 chr2:109888779-109930210 Sample_02_0767 Ovary OVCA429 314 18 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_076201834 chr2:109888786-109930424 Sample_02_0762 Podocyte podocyte_CTL 1834 12 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_068200207 chr2:109888798-109924958 Sample_02_0682 Blood Kasumi-1 207 14 15 1 0 112 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_139000152 chr2:109888837-109924258 Sample_02_1390 Peripheral blood SU-DHL-1_ALK+ 152 5 15 1 0 107 590 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_136100819 chr2:109888880-109924680 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 819 10 15 1 0 111 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_147100833 chr2:109888938-109928713 Sample_02_1471 Blood Outgrowth Endothelia BOEC 833 12 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_081700414 chr2:109890195-109907855 Sample_02_0817 Ovary Epithelial ovarian cancer 414 5 0 0 0 53 299 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_110700292 chr2:109890391-109930026 Sample_02_1107 Brain SK-N-AS 292 16 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_056900928 chr2:109890648-109937511 Sample_02_0569 Periodontal ligament mesenchymal stem cell 928 21 15 1 0 116 831 LIMS3L,LIMS3-LOC440895,LOC100288570,LINC01123
SE_02_094300161 chr2:109890803-109929515 Sample_02_0943 Brain LNZ308 161 17 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_138000388 chr2:109891149-109906406 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 388 6 0 0 0 48 280 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_01_011000507 chr2:109893520-109925907 Sample_01_0110 Aorta thoracic aorta_37y 507 18 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_01_009300653 chr2:109894002-109926849 Sample_01_0093 Aorta ascending aorta 653 11 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_138900350 chr2:109894083-109922939 Sample_02_1389 Peripheral blood SUP-M2_ALK+ 350 2 10 1 0 107 579 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_134000802 chr2:109894236-109923496 Sample_02_1340 Blood acute myeloid leukemia 802 16 10 1 0 107 579 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_086901072 chr2:109894621-109930150 Sample_02_0869 Fibroblast VH10_NO_UV 1072 15 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_047400263 chr2:109894684-109930157 Sample_02_0474 Fibroblast umbilical cord Fibroblast 263 11 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_156601018 chr2:109895004-109924797 Sample_02_1566 Dermal Dermal fibroblast 1018 6 15 1 0 112 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_049800349 chr2:109895280-109930183 Sample_02_0498 Fetal lung IMR90 Senescent_1 349 11 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_137901123 chr2:109895297-109905725 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1123 4 0 0 0 44 194 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_048200447 chr2:109895323-109924095 Sample_02_0482 Bone marrow HSCe_18y_CD34+,CD38-,Lineage-_ 447 9 11 1 0 107 579 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_108000931 chr2:109895384-109906101 Sample_02_1080 Muscle JR1 shCtrl 931 2 0 0 0 48 248 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_137701200 chr2:109895412-109906725 Sample_02_1377 Pancreas Pancreatic_tumor_associated_fibroblasts_BF1_untreated 1200 3 0 0 0 49 299 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_137601042 chr2:109895438-109928396 Sample_02_1376 Pancreas Pancreatic_tumor_associated_fibroblasts_B011C_untreated 1042 11 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_135600979 chr2:109895503-109906357 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 979 2 0 0 0 48 273 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_130900535 chr2:109895705-109925641 Sample_02_1309 Artery Pulmonary artery endothelial cells_Control 535 7 15 1 0 116 625 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_132801297 chr2:109900051-109925135 Sample_02_1328 Non-mineralized aortic valves aortic valve interstitial cells 1297 7 15 1 0 90 497 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_074900389 chr2:109910498-109928707 Sample_02_0749 Mammary gland HCC1599_GSI 389 5 15 1 0 60 326 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_074800449 chr2:109910545-109928798 Sample_02_0748 Mammary gland HCC1599_WO 449 3 15 1 0 60 326 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_061900634 chr2:109918809-109930447 Sample_02_0619 Head and Neck HPV+ HNSCC_SCC-047 634 2 5 0 0 37 175 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_016600538 chr2:109919184-109930358 Sample_02_0166 Mammary gland HCC1954_Parental 538 5 5 0 0 37 175 LIMS3,LIMS3-LOC440895,LOC100288570,RGPD6
SE_02_016700423 chr2:109919184-109930358 Sample_02_0167 Mammary gland HCC1954_LCC2 423 5 5 0 0 37 175 LIMS3,LIMS3-LOC440895,LOC100288570,MIR4267
SE_02_123000917 chr2:109920011-109928634 Sample_02_1230 Lung PC9 917 3 5 0 0 27 100 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_01_005900342 chr2:109920244-109929588 Sample_01_0059 Lung PC-9 342 2 5 0 0 27 86 LIMS3,LIMS3-LOC440895,LOC100288570
SE_01_002700529 chr2:109920326-109929848 Sample_01_0027 Prostate epithelial-cell-of-prostate 529 2 5 0 0 21 76 LIMS3,LIMS3-LOC440895,LOC100288570
SE_02_151400559 chr2:109920433-109930109 Sample_02_1514 Lung Differentiated AT1-like cells 559 4 5 0 0 21 70 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_123100374 chr2:109920503-109929303 Sample_02_1231 Lung PC9_siMED13L-1 374 4 5 0 0 21 68 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_123200543 chr2:109920722-109929099 Sample_02_1232 Lung PC9_siMED13L-2 543 5 5 0 0 20 67 LIMS3L,LIMS3-LOC440895,LOC100288570
SE_02_104602692 chr2:109969974-110008625 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 2692 14 162 6 0 0 699 LINC01123,LOC100288570
SE_01_005700249 chr2:109975376-110082250 Sample_01_0057 Pancreas duct PANC-1 249 17 612 29 0 56 728 MIR4267,LOC100288570,MALL
SE_02_039601400 chr2:109975453-109999629 Sample_02_0396 Skin NHEK-D 1400 6 99 6 0 0 639 LOC100288570,MIR4267
SE_02_016600280 chr2:109975509-110017272 Sample_02_0166 Mammary gland HCC1954_Parental 280 5 230 9 0 0 639 LOC100288570,MIR4267
SE_02_016700302 chr2:109975509-110017272 Sample_02_0167 Mammary gland HCC1954_LCC2 302 5 230 9 0 0 639 LOC100288570,MIR4267
SE_02_023700329 chr2:109975529-110002225 Sample_02_0237 Colon V389 329 7 109 6 0 0 639 LOC100288570,MIR4267
SE_02_116800596 chr2:109979927-110032935 Sample_02_1168 Biliary H69_TGF Vehicle_2 596 12 282 10 0 41 639 LINC01123,LOC100288570,MIR4267
SE_02_024000500 chr2:109984384-109999631 Sample_02_0240 Colon V429_2 500 3 52 3 0 0 639 LOC100288570,MIR4267
SE_02_116600900 chr2:109984465-110028798 Sample_02_1166 Biliary H69_TGF beta_16h_1 900 8 242 8 0 35 639 LINC01123,LOC100288570,MIR4267
SE_02_035200406 chr2:109985320-110000054 Sample_02_0352 Colon HCT116 406 2 40 0 0 0 639 LOC100288570,MIR4267
SE_02_035800262 chr2:109985511-109999928 Sample_02_0358 Colon LS180 262 2 34 0 0 0 639 LOC100288570,MIR4267
SE_01_007900907 chr2:109985575-109991653 Sample_01_0079 Peyers patch Peyers-patch 907 2 14 0 0 0 362 LOC100288570,MIR4267
SE_02_032200604 chr2:109985671-110002559 Sample_02_0322 Colon Caco-2 604 2 41 0 0 0 639 LOC100288570,MIR4267
SE_00_002000962 chr2:109985713-110001729 Sample_00_0020 Large intestine large-intestine_108d 962 3 35 0 0 0 639 LOC100288570,MIR4267
SE_02_024100721 chr2:109985789-110002140 Sample_02_0241 Colon V456 721 4 37 0 0 0 639 LOC100288570,MIR4267
SE_02_035500239 chr2:109985819-110000069 Sample_02_0355 Colon HCT15 239 2 32 0 0 0 639 LOC100288570,MIR4267
SE_00_003601195 chr2:109985833-109999669 Sample_00_0036 Small intestine small-intestine_108days 1195 3 27 0 0 0 639 LOC100288570,MALL
SE_02_029300323 chr2:109985869-109989121 Sample_02_0293 Pancreatic L3-6_4SC-202 323 1 11 0 0 0 362 LOC100288570,MIR4267
SE_02_001001044 chr2:109985895-110002582 Sample_02_0010 Kidney A-498_emptyvector 1044 3 40 0 0 0 639 LOC100288570,MIR4267
SE_02_035300666 chr2:109985902-110001606 Sample_02_0353 Colon HT29 666 5 32 0 0 0 639 LOC100288570,MIR4267
SE_01_007100531 chr2:109986071-109999847 Sample_01_0071 Pancreas body-of-pancreas 531 2 28 0 0 0 639 LOC100288570,MIR4267
SE_02_094800999 chr2:109986072-110001477 Sample_02_0948 Pharyng Detroit562 999 3 32 0 0 0 639 LINC01123,LOC100288570
SE_00_003000391 chr2:109986231-109988247 Sample_00_0030 Pancreas pancreas 391 2 3 0 0 0 288 LOC100288570,NPHP1
SE_02_116700821 chr2:109986567-110002196 Sample_02_1167 Biliary H69_TGF Vehicle_1 821 6 32 0 0 0 639 LINC01123,LOC100288570
Genomic distribution of SEs associated with LOC100288570
Genome Browser

The strength of the tissue affected by the gene

Expression of LOC100288570

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)