SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_001001044
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Kidney
Biosample name: A-498_emptyvector
Genomic region: chr2:109985895-110002582
Size: 16687
Super-enhancer rank 1044
Number of SE elements: 3
ChIP density(Case|Control): 33275.5467|2526.4118
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR4267 ;
ROSE Overlap ;
ROSE Proximal LOC100288570 ;
ROSE Closest LOC100288570 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LIMS3L ; LIMS3 ; MIR4436B1 ; MIR4436B2 ; LINC01123 ; LOC440895 ; LIMS3-LOC440895 ; LOC100288570 ; MIR4267 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_001001044 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers