SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_074800449
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: HCC1599_WO
Genomic region: chr2:109910545-109928798
Size: 18253
Super-enhancer rank 449
Number of SE elements: 3
ChIP density(Case|Control): 57349.1007|2838.3415
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LIMS3-LOC440895 ;
ROSE Overlap LIMS3L ; LIMS3-LOC440895 ;
ROSE Proximal LOC100288570 ;
ROSE Closest LIMS3L ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LIMS3L ; LIMS3 ; LINC01123 ; LOC440895 ; LIMS3-LOC440895 ; LOC100288570 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_074800449 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers