SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000251442
Gene: LINC01094 Gene type: lncRNA
Strand: + External links:
Genomic region: chr4:78638780-78683185 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_155500012 chr4:78542841-78643662 Sample_02_1555 Gastrointestinal Stromal GIST-4_KIT e9 12 50 2832 232 7 165 702 FRAS1,ANXA3,LINC01094
SE_02_111100156 chr4:78550994-78634343 Sample_02_1111 Other HGrC1_SMAD2/3KO 156 23 2272 188 6 136 565 ANXA3,LINC01094
SE_02_089201356 chr4:78551124-78613319 Sample_02_0892 Heart left ventricle_LV1215 1356 20 1702 141 5 97 565 ANXA3,LINC01094
SE_02_109900003 chr4:78584721-78749633 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 3 106 4400 284 6 332 856 ANXA3,LINC01094,BMP2K
SE_02_058000016 chr4:78585326-78820430 Sample_02_0580 Blood HEL_sgSIK3e4 16 76 6141 344 7 416 1071 BMP2K,ANXA3,LINC01094
SE_02_057600017 chr4:78585332-78800615 Sample_02_0576 Blood HEL_sgLKB1e2 17 87 5599 324 7 412 1071 BMP2K,ANXA3,LINC01094
SE_02_057900020 chr4:78585474-78789576 Sample_02_0579 Blood HEL_sgNeg2 20 114 5331 309 7 407 1071 BMP2K,ANXA3,LINC01094
SE_02_087500003 chr4:78585512-78904591 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 3 135 8037 420 8 538 1614 BMP2K,ANXA3,MIR5096,LINC01094,PAQR3
SE_02_149200003 chr4:78588772-78891182 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 3 100 7662 386 7 523 1587 BMP2K,ANXA3,MIR5096,LINC01094,PAQR3
SE_04_000100009 chr4:78591055-78790040 Sample_04_0001 Blood heat shocked K562 9 21 5179 291 6 397 1044 BMP2K,ANXA3,LINC01094
SE_02_113000020 chr4:78597455-78738026 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 20 62 3749 240 4 275 704 ANXA3,LINC01094,BMP2K
SE_04_000200737 chr4:78597619-78673448 Sample_04_0002 Blood cold shocked K562 737 14 2018 159 4 152 309 ANXA3,LINC01094
SE_02_082100090 chr4:78598481-78673477 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 90 15 1993 158 4 151 310 ANXA3,LINC01094
SE_02_103300002 chr4:78598557-78822319 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 2 58 5802 317 5 378 903 BMP2K,ANXA3,MIR5096,LINC01094
SE_02_054500157 chr4:78598591-78672946 Sample_02_0545 Bone marrow K562 WT 157 23 1979 157 4 150 277 ANXA3,LINC01094
SE_02_082200023 chr4:78598761-78672718 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 23 17 1965 156 4 150 277 ANXA3,LINC01094
SE_02_082300026 chr4:78598892-78671759 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 26 16 1939 156 4 150 277 ANXA3,LINC01094
SE_02_083300615 chr4:78599104-78671841 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 615 20 1936 156 4 150 277 ANXA3,LINC01094
SE_02_082000045 chr4:78599177-78672902 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 45 20 1957 155 4 150 277 ANXA3,LINC01094
SE_02_083501148 chr4:78599200-78671862 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 1148 18 1931 154 4 150 277 ANXA3,LINC01094
SE_02_098700045 chr4:78599244-78672781 Sample_02_0987 Blood K562_Control_1 45 27 1949 154 4 150 277 ANXA3,LINC01094
SE_02_117000007 chr4:78599312-78667070 Sample_02_1170 Blood HEL92.1.7 7 31 1800 149 3 142 277 ANXA3,LINC01094
SE_02_083400647 chr4:78599400-78672827 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 647 20 1946 154 4 150 277 ANXA3,LINC01094
SE_02_083700804 chr4:78599576-78671938 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 804 15 1921 154 4 150 277 ANXA3,LINC01094
SE_02_098800316 chr4:78599601-78631474 Sample_02_0988 Blood K562_EPZ 316 11 879 81 3 36 105 ANXA3,LINC01094
SE_02_130100175 chr4:78608223-78661735 Sample_02_1301 Blood PER-117 175 16 1406 116 1 115 171 ANXA3,LINC01094
SE_02_121600305 chr4:78608394-78617566 Sample_02_1216 Blood Jurkat ZBTB1 KO 305 4 244 28 0 13 45 ANXA3,LINC01094
SE_02_121700180 chr4:78608438-78617872 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 180 1 249 28 0 13 45 ANXA3,LINC01094
SE_02_121500158 chr4:78608546-78617690 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 158 2 244 27 0 13 45 ANXA3,LINC01094
SE_02_111200473 chr4:78608657-78658900 Sample_02_1112 T lymphocyte THP-6 T-ALL 473 8 1337 112 1 101 171 ANXA3,LINC01094
SE_02_121400206 chr4:78608725-78617730 Sample_02_1214 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1 206 3 241 27 0 13 45 ANXA3,LINC01094
SE_02_048101592 chr4:78610022-78657699 Sample_02_0481 Mammary gland MDA-MB231 1592 18 1261 106 1 92 158 ANXA3,LINC01094
SE_02_078300207 chr4:78610280-78673470 Sample_02_0783 Blood MEC2 207 18 1646 124 2 138 221 ANXA3,LINC01094
SE_02_119500128 chr4:78611820-78673482 Sample_02_1195 Brain GBM29 128 34 1610 122 2 132 205 LINC01094
SE_02_075700973 chr4:78614148-78631705 Sample_02_0757 Embryo ES-derived progenitors_FOXA2 -/- 973 4 474 39 1 14 0 LINC01094
SE_02_047600790 chr4:78621450-78634428 Sample_02_0476 iPSCs hiPSC derived hepatocyte-like cells 790 9 341 27 0 30 0 LINC01094
SE_02_126501513 chr4:78622156-78662827 Sample_02_1265 Bone Im-GCT-4072_G34W-repair_WT_D6 1513 9 1048 83 0 105 130 LINC01094
SE_02_097900567 chr4:78626734-78667292 Sample_02_0979 Brain JN14-BS1_H3.3K27M 567 17 1039 80 0 111 172 LINC01094
SE_02_093000651 chr4:78626834-78691645 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 651 40 1646 100 1 166 583 LINC01094
SE_02_095600349 chr4:78626953-78672550 Sample_02_0956 Brain IDH1_2658 349 14 1170 85 1 114 172 LINC01094
SE_02_118100306 chr4:78627242-78664138 Sample_02_1181 Brain GBM10 306 18 952 76 0 104 172 LINC01094
SE_02_157300388 chr4:78628497-78671879 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 388 26 1123 81 1 114 172 LINC01094
SE_02_133000376 chr4:78628702-78671586 Sample_02_1330 Blood AMU-AML1 376 17 1109 81 1 114 172 LINC01094
SE_02_118700482 chr4:78628755-78668919 Sample_02_1187 Brain GBM16 482 22 1043 79 1 114 172 LINC01094
SE_02_067100457 chr4:78628881-78663252 Sample_02_0671 Mammary gland breast cancer_DSG 457 17 890 69 0 104 172 LINC01094
SE_02_119200607 chr4:78628951-78668662 Sample_02_1192 Brain GBM26 607 21 1034 79 1 113 172 LINC01094
SE_02_118500531 chr4:78628970-78668851 Sample_02_1185 Brain GBM14 531 17 1036 79 1 113 172 LINC01094
SE_02_075800531 chr4:78628983-78668880 Sample_02_0758 Peripheral blood REH 531 13 1036 79 1 114 172 LINC01094
SE_02_158500145 chr4:78629072-78669556 Sample_02_1585 Blood SupB15 DMSO 145 19 1054 79 1 114 172 LINC01094
SE_02_119100374 chr4:78629115-78672627 Sample_02_1191 Brain GBM25 374 30 1128 81 1 114 172 LINC01094
SE_02_119000352 chr4:78629138-78668882 Sample_02_1190 Brain GBM24 352 23 1032 79 1 114 172 LINC01094
SE_02_117500240 chr4:78629155-78668771 Sample_02_1175 Brain GBM03 240 20 1030 79 1 113 172 LINC01094
SE_02_135000104 chr4:78629343-78672762 Sample_02_1350 Leukophereses leukophereses_p456 104 15 1120 79 1 114 172 LINC01094
SE_02_131500291 chr4:78629381-78667812 Sample_02_1315 Brain hMGLs_INPP5D SNP 291 13 989 74 0 112 172 LINC01094
SE_02_131600213 chr4:78629545-78669013 Sample_02_1316 Brain hMGLs_TREM2-R47H 213 16 1023 77 1 114 172 LINC01094
SE_02_131300365 chr4:78629560-78668938 Sample_02_1313 Brain hMGLs_CD33_SNP 365 14 1018 77 1 114 172 LINC01094
SE_02_131700196 chr4:78629565-78671562 Sample_02_1317 Brain hMGLs_SORL1-KO 196 17 1083 79 1 114 172 LINC01094
SE_02_131400294 chr4:78629627-78668747 Sample_02_1314 Brain hMGLs_TREM2-KO 294 13 1012 77 1 113 172 LINC01094
SE_02_131800258 chr4:78629653-78668265 Sample_02_1318 Brain hMGLs_SORL1-A528T 258 13 1002 77 1 113 172 LINC01094
SE_02_117400401 chr4:78629820-78672580 Sample_02_1174 Brain GBM02 401 32 1100 79 1 114 172 LINC01094
SE_02_044700403 chr4:78629912-78663820 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 403 19 877 71 0 104 172 LINC01094
SE_02_118600378 chr4:78629970-78668907 Sample_02_1186 Brain GBM15 378 20 1005 77 1 114 172 LINC01094
SE_02_044500839 chr4:78630058-78671119 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 839 13 1062 78 1 114 172 LINC01094
SE_02_146000921 chr4:78630437-78668319 Sample_02_1460 Blood Mutz-3 921 11 986 77 1 113 172 LINC01094
SE_02_096700429 chr4:78631215-78662912 Sample_02_0967 Brain H3.3K27M_JN57 429 12 813 61 0 101 134 LINC01094
SE_02_087901546 chr4:78644456-78654947 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 1546 2 236 23 0 23 126 LINC01094
SE_02_088001542 chr4:78644532-78652792 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 1542 3 184 17 0 18 126 LINC01094
SE_02_134000205 chr4:78647044-78669745 Sample_02_1340 Blood acute myeloid leukemia 205 13 565 45 1 72 99 LINC01094
SE_02_156900833 chr4:78647896-78668217 Sample_02_1569 Endothelial Endothelial cells 833 10 513 45 1 69 99 LINC01094
SE_02_083101049 chr4:78648355-78668623 Sample_02_0831 Umblical vein HUVECs_TNF0min 1049 15 513 45 1 69 99 LINC01094
SE_02_098800013 chr4:78648589-78735112 Sample_02_0988 Blood K562_EPZ 13 31 2268 127 1 191 510 LINC01094,BMP2K
SE_02_092700513 chr4:78648613-78667930 Sample_02_0927 Peripheral blood neutrophils_US 513 8 481 42 1 68 99 LINC01094
SE_02_156801221 chr4:78649941-78667918 Sample_02_1568 Heart Cardiac progenitor cells 1221 6 444 36 1 68 46 LINC01094
SE_02_158600160 chr4:78650415-78668995 Sample_02_1586 Blood SupB15 ACY1035 160 13 467 37 1 70 46 LINC01094
SE_02_134800565 chr4:78655005-78668642 Sample_02_1348 Leukophereses leukophereses_p408 565 4 350 25 1 58 46 LINC01094
SE_02_075600643 chr4:78659917-78672043 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 643 2 311 18 1 30 46 LINC01094
SE_02_117000017 chr4:78684228-78734441 Sample_02_1170 Blood HEL92.1.7 17 36 1374 69 0 89 36 LINC01094,BMP2K
SE_02_122900044 chr4:78684594-78837614 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 44 84 3901 158 2 212 293 BMP2K,MIR5096,LINC01094
SE_02_146600304 chr4:78687240-78738958 Sample_02_1466 Blood HUDEP-2_BCL11AKO 304 12 1400 72 0 78 0 LINC01094,BMP2K
SE_02_082100081 chr4:78687664-78737009 Sample_02_0821 Haematopoietic and lymphoid tissue SET-2_WT_GSK-LSD1 81 12 1343 70 0 78 0 LINC01094,BMP2K
SE_02_146800709 chr4:78687919-78738922 Sample_02_1468 Blood HUDEP-2_WT 709 9 1380 72 0 78 0 LINC01094,BMP2K
SE_02_146700018 chr4:78688704-78877284 Sample_02_1467 Blood HUDEP-2_LRFKO 18 45 4699 185 2 267 647 BMP2K,MIR5096,LINC01094
SE_02_117100066 chr4:78689420-78734560 Sample_02_1171 Blood HEL92.1.7_Drug resistant 66 25 1234 67 0 75 0 LINC01094,BMP2K
SE_02_098700033 chr4:78689507-78735249 Sample_02_0987 Blood K562_Control_1 33 23 1251 67 0 75 0 LINC01094,BMP2K
SE_04_000200336 chr4:78689518-78747226 Sample_04_0002 Blood cold shocked K562 336 10 1548 77 0 84 0 LINC01094,BMP2K
SE_02_054500115 chr4:78689702-78735031 Sample_02_0545 Bone marrow K562 WT 115 13 1236 66 0 75 0 LINC01094,BMP2K
SE_02_082000049 chr4:78689719-78735150 Sample_02_0820 Haematopoietic and lymphoid tissue SET-2_WT_DMSO 49 8 1241 66 0 75 0 LINC01094,BMP2K
SE_02_082200032 chr4:78689792-78735001 Sample_02_0822 Haematopoietic and lymphoid tissue SET-2_insR_DMSO 32 8 1230 66 0 75 0 LINC01094,BMP2K
SE_02_082300031 chr4:78690061-78734824 Sample_02_0823 Haematopoietic and lymphoid tissue SET-2_insR_GSK-LSD1 31 10 1225 66 0 75 0 LINC01094,BMP2K
SE_02_111600364 chr4:78691176-78735240 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 364 19 1210 66 0 73 0 LINC01094,BMP2K
Genomic distribution of SEs associated with LINC01094
Genome Browser

The strength of the tissue affected by the gene

Expression of LINC01094

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)