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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000130589
Gene: HELZ2 Gene type: protein_coding
Strand: - External links:
Genomic region: chr20:63558086-63574239 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077600557 chr20:63482816-63524992 Sample_02_0776 Pancreas EndoC-BH1 557 7 1481 178 3 152 1891 PPDPF,EEF1A2,KCNQ2,SRMS,PTK6,C20ORF195,HELZ2
SE_02_115100307 chr20:63517494-63524323 Sample_02_1151 Mammary gland MCF-7_UNTR 307 1 268 28 1 17 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_056500056 chr20:63518425-63545737 Sample_02_0565 Mammary gland MCF7L-P_E2_16h 56 9 1133 120 1 106 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_157800248 chr20:63518777-63546310 Sample_02_1578 Mammary gland MCF7_DAC+455 248 5 1127 112 1 113 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2,DIDO1,TCFL5,STMN3,C20orf195
SE_02_125800095 chr20:63518930-63547418 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 95 7 1177 116 1 119 2813 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_062700277 chr20:63519210-63523595 Sample_02_0627 Mammary gland WS8_VEH 277 2 149 13 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_088400139 chr20:63519269-63547078 Sample_02_0884 Colon LoVo 139 4 1138 115 1 115 2732 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_056800122 chr20:63519321-63545725 Sample_02_0568 Mammary gland MCF7L_E2_4h 122 10 1090 112 1 106 2704 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_062500328 chr20:63519324-63523405 Sample_02_0625 Mammary gland WS8_4OHT 328 1 135 12 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_066700167 chr20:63519376-63522861 Sample_02_0667 Mammary gland MCF7_FA 167 1 122 10 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_02_152500282 chr20:63519478-63547068 Sample_02_1525 Stomach N87 DMSO 282 6 1133 114 1 115 2728 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_081901148 chr20:63519489-63523496 Sample_02_0819 Ovary Mucinous ovarian cancer 1148 1 136 12 0 15 489 PPDPF,KCNQ2,SRMS,EEF1A2,PTK6,C20ORF195,HELZ2
SE_01_010700440 chr20:63519600-63539124 Sample_01_0107 Esophagus esophagus squamous epithelium 440 4 797 87 1 55 1931 PTK6,PPDPF,KCNQ2,SRMS,EEF1A2,C20ORF195,HELZ2
SE_02_113100213 chr20:63522005-63546021 Sample_02_1131 Pancreas T3M4 wt 213 11 1011 106 1 96 2281 PTK6,SRMS,PPDPF,KCNQ2,EEF1A2,C20ORF195,HELZ2
SE_02_151000532 chr20:63523139-63546542 Sample_02_1510 Lung H3122_LR_Pano 532 8 985 101 1 98 2215 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_154100331 chr20:63525941-63545947 Sample_02_1541 Nasopharyngeal HNE1 331 3 801 88 0 91 2215 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_114400070 chr20:63529444-63542446 Sample_02_1144 Peripheral nerve S462_PRC2 mutant 70 5 539 67 0 68 1660 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_107000296 chr20:63529628-63542802 Sample_02_1070 Blood SupT1_WT 296 3 543 69 0 75 1720 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_047700669 chr20:63530581-63546557 Sample_02_0477 Colon intestinal epithelial organoids_139a 669 6 644 70 0 90 1766 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_094600591 chr20:63533395-63546055 Sample_02_0946 Tongue HN12 591 2 498 49 0 82 1428 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_153900442 chr20:63533406-63546463 Sample_02_1539 Nasopharyngeal C666-1 442 5 513 49 0 82 1426 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_102500507 chr20:63533435-63546513 Sample_02_1025 Esophagus KYSE150 507 3 513 49 0 82 1422 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_081900479 chr20:63533512-63540106 Sample_02_0819 Ovary Mucinous ovarian cancer 479 1 235 24 0 23 624 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_071600604 chr20:63533557-63546096 Sample_02_0716 Pancreas SUIT2_GFP 604 7 489 46 0 81 1386 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_137000529 chr20:63533595-63545983 Sample_02_1370 Pancreas Patu8902-untreated 529 5 486 46 0 74 1379 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_137100495 chr20:63533595-63546574 Sample_02_1371 Pancreas Patu899S-untreated 495 4 506 46 0 81 1379 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_125400476 chr20:63533614-63546162 Sample_02_1254 Bladder Bladder tumor Basal1 476 3 491 46 0 79 1371 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_136600446 chr20:63533700-63545926 Sample_02_1366 Pancreas BxPC3-untreated 446 6 482 45 0 67 1345 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_124800773 chr20:63533784-63540031 Sample_02_1248 Bladder RT4 773 2 222 21 0 16 557 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_071901053 chr20:63533812-63545926 Sample_02_0719 Pancreas SUIT2_TP63dN_DOX 1053 3 476 43 0 67 1322 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_071400448 chr20:63533842-63546314 Sample_02_0714 Pancreas SUIT2_MTV 448 6 490 43 0 74 1315 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_139700161 chr20:63533868-63546071 Sample_02_1397 Stomach SNU16 161 2 475 42 0 74 1313 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_047800679 chr20:63533936-63545764 Sample_02_0478 Colon normal colon mucosa 679 3 466 42 0 67 1306 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_087300363 chr20:63534302-63544606 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 363 4 403 38 0 62 1212 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_050700301 chr20:63534310-63545086 Sample_02_0507 Esophagus TE7_1 301 2 428 42 0 63 1211 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_105200584 chr20:63534452-63545781 Sample_02_1052 Esophagus JH-EsoAd1 584 4 448 42 0 63 1180 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_070400500 chr20:63534458-63545960 Sample_02_0704 Pancreas HPAFII WT 500 3 450 42 0 63 1177 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_087000161 chr20:63534716-63543217 Sample_02_0870 Colon HCT116_GLIS2.1-DMSO 161 3 333 35 0 53 862 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_136700588 chr20:63536150-63540501 Sample_02_1367 Pancreas Capan1-untreated 588 1 148 17 0 11 188 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_085200468 chr20:63536174-63543681 Sample_02_0852 Mammary gland MCF7L-P 468 1 300 31 0 55 847 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_115900470 chr20:63536174-63543681 Sample_02_1159 Mammary gland MCF7 470 1 300 31 0 55 847 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2,DIDO1,TCFL5,STMN3,C20orf195,KCNQ2
SE_02_102900445 chr20:63536207-63547796 Sample_02_1029 Colon HCT116 445 1 474 39 0 73 1167 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_085300455 chr20:63536208-63543955 Sample_02_0853 Mammary gland MCF7L-TamR 455 1 307 31 0 55 847 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_075001083 chr20:63540430-63555388 Sample_02_0750 Lymphoma Rec-1_GSI 1083 4 552 34 0 66 1099 SRMS,C20ORF195,PPDPF,EEF1A2,PTK6,HELZ2
SE_02_061500328 chr20:63571065-63575967 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 328 1 139 11 0 12 519 HELZ2,SRMS,PTK6,C20ORF195
SE_02_155301102 chr20:63571257-63596139 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 1102 12 832 88 4 62 1683 HELZ2,GMEB2,SRMS,LOC100505771,C20ORF195,PTK6
SE_02_133400249 chr20:63571807-63600574 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 249 9 969 114 4 67 1781 HELZ2,GMEB2,SRMS,LOC100505771,C20ORF195,PTK6
SE_02_073900430 chr20:63586718-63642979 Sample_02_0739 Blood Nalm6 430 11 1716 209 7 125 2447 LOC100505771,STMN3,GMEB2,SRMS,RTEL1,HELZ2,PTK6,C20ORF195
SE_02_065900264 chr20:63587916-63643136 Sample_02_0659 Lung H23 264 19 1672 203 6 120 2357 LOC100505771,STMN3,GMEB2,SRMS,RTEL1,HELZ2,C20ORF195
SE_02_103600095 chr20:63589918-63650808 Sample_02_1036 Mammary gland HCC70_XY018 95 18 1847 216 4 119 2166 LOC100505771,STMN3,GMEB2,SRMS,RTEL1,HELZ2,TNFRSF6B,C20ORF195
SE_02_153000733 chr20:63602178-63646519 Sample_02_1530 Peripheral blood neutrophils_0BA0X 733 13 1295 146 4 75 1429 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2,C20ORF195
SE_02_152900711 chr20:63602262-63645575 Sample_02_1529 Peripheral blood neutrophils_0BC75 711 14 1259 141 4 75 1429 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2,C20ORF195
SE_02_077500296 chr20:63603682-63651129 Sample_02_0775 Pancreas EndoC-BH1_SE 296 17 1387 143 4 66 1345 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2,TNFRSF6B
SE_02_083400465 chr20:63606239-63642345 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 465 7 1044 112 4 54 943 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_083600484 chr20:63606242-63642121 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 484 8 1038 112 4 39 906 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_01_010500125 chr20:63610386-63642690 Sample_01_0105 Thyroid gland thyroid gland_54y 125 10 963 104 4 54 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_147600417 chr20:63610726-63629573 Sample_02_1476 Bone EW-1 417 4 569 61 0 31 325 LOC100505771,GMEB2,RTEL1,HELZ2,STMN3
SE_01_010000122 chr20:63611161-63620374 Sample_01_0100 Thyroid gland thyroid gland_37y 122 2 285 35 0 5 181 GMEB2,RTEL1,LOC100505771,HELZ2,STMN3
SE_02_113100436 chr20:63611715-63642977 Sample_02_1131 Pancreas T3M4 wt 436 9 946 101 3 53 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_058100542 chr20:63611743-63641835 Sample_02_0581 Blood MOLM13_empty_HG 542 6 920 100 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_099300765 chr20:63611753-63641735 Sample_02_0993 Blood MOLM-13_empty 765 7 917 98 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_099400895 chr20:63611757-63641737 Sample_02_0994 Blood MOLM13_SIK3TQ 895 8 917 98 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_058200665 chr20:63611760-63641821 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 665 5 920 100 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_057500683 chr20:63611852-63642429 Sample_02_0575 Blood MOLM13_sgLKB1e2 683 7 928 99 3 53 970 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_057700663 chr20:63611963-63641805 Sample_02_0577 Blood MOLM13_empty 663 4 912 98 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_057400745 chr20:63612045-63641805 Sample_02_0574 Blood MOLM-13_sgNeg2 745 7 908 98 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_057800667 chr20:63612114-63641820 Sample_02_0578 Blood MOLM-13_sgSIK3e4 667 8 907 98 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_099500918 chr20:63612207-63641654 Sample_02_0995 Blood MOLM-13_empty vector 918 7 898 96 3 38 824 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_108200811 chr20:63614428-63650104 Sample_02_1082 Retina retina 811 6 1076 108 3 59 1246 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2,TNFRSF6B
SE_02_136700641 chr20:63614537-63643232 Sample_02_1367 Pancreas Capan1-untreated 641 4 853 90 3 54 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_078200397 chr20:63616766-63642939 Sample_02_0782 Blood MEC1 397 9 776 74 3 53 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_078300478 chr20:63617012-63642854 Sample_02_0783 Blood MEC2 478 9 766 74 3 53 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_077900241 chr20:63617397-63643764 Sample_02_0779 Lymphoma U2932 241 11 787 76 3 54 1070 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_103500173 chr20:63617452-63642800 Sample_02_1035 Mammary gland HCC70_Vehicle 173 5 757 74 3 53 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_056300172 chr20:63617527-63643477 Sample_02_0563 Mammary gland MCF7L-P_0h 172 6 772 76 3 54 1002 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_077100920 chr20:63620090-63643220 Sample_02_0771 Ovary OVCA429_shGRHL2 920 15 689 73 3 49 821 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
SE_02_135000292 chr20:63623435-63642343 Sample_02_1350 Leukophereses leukophereses_p456 292 8 570 56 3 48 762 LOC100505771,STMN3,GMEB2,RTEL1,HELZ2
Genomic distribution of SEs associated with HELZ2
Genome Browser

The strength of the tissue affected by the gene

Expression of HELZ2

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)