Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_139700109 chr1:1024830-1080898 56068 109 8 2060 142 2 283 4874 AGRN,RNF223,C1ORF159,PERM1,ISG15,HES4
SE_02_139700026 chr1:10723499-10816011 92512 26 15 2825 40 10 1092 245 CASZ1
SE_02_139700148 chr1:119763655-119831149 67494 148 17 1948 191 2 99 737 REG4,HMGCS2,NBPF7
SE_02_139700020 chr1:151934363-152001654 67291 20 16 1543 256 5 132 465 S100A10,NBPF18P,THEM4,S100A11
SE_02_139700029 chr1:156096046-156130946 34900 29 8 830 71 4 249 691 LMNA,LAMTOR2,RAB25,UBQLN4,SEMA4A,MEX3A
SE_02_139700146 chr1:156745865-156753311 7446 146 1 187 13 0 68 388 HDGF,CRABP2,RRNAD1,ISG20L2,PRCC,MRPL24
SE_02_139700039 chr1:16139057-16190372 51315 39 13 1402 157 4 190 455 EPHA2,RSG1,ARHGEF19
SE_02_139700089 chr1:164590277-164685541 95264 89 21 2537 34 10 717 443 PBX1
SE_02_139700134 chr1:16888758-16915424 26666 134 4 1023 113 1 3 217 RNVU1-18,CROCC
SE_02_139700076 chr1:17558812-17606036 47224 76 15 1476 38 2 10 966 ARHGEF10L
SE_02_139700122 chr1:181087690-181142648 54958 122 9 1533 110 7 394 542 IER5,LOC101928973
SE_02_139700043 chr1:202007032-202088763 81731 43 15 2249 117 7 112 1554 ELF3,GPR37L1,RNPEP,MIR6740
SE_02_139700159 chr1:21896318-21975708 79390 159 15 2422 217 1 254 212 HSPG2,CELA3B,LINC00339,CELA3A
SE_02_139700097 chr1:234598818-234640871 42053 97 7 1156 85 4 0 1097 IRF2BP2,LINC00184,LOC101927787
SE_02_139700067 chr1:234955035-234999222 44187 67 7 1354 63 6 183 308 LOC101927851
SE_02_139700030 chr1:23524232-23577126 52894 30 7 1495 75 2 196 1167 ID3,LOC101928163,E2F2,ASAP3
SE_02_139700144 chr1:244952076-244972947 20871 144 3 644 62 1 16 254 LOC101928068,EFCAB2
SE_02_139700108 chr1:27516909-27543382 26473 108 4 684 38 2 278 152 AHDC1,WASF2
SE_02_139700062 chr1:28504750-28511456 6706 62 1 252 24 0 0 450 SNORA73B,RCC1,SNHG3,SNORA73A,TRNAU1AP
SE_02_139700059 chr1:32712280-32769637 57357 59 10 1450 97 3 279 745 KIAA1522,YARS,S100PBP,SYNC
SE_02_139700119 chr1:42924166-42980581 56415 119 15 1637 186 6 245 1385 SLC2A1-AS1,SLC2A1
SE_02_139700055 chr1:67681805-67760987 79182 55 14 2099 114 12 228 918 GNG12,GADD45A
SE_02_139700162 chr1:8873472-8881282 7810 162 2 216 4 0 18 387 ENO1,ENO1-AS1,MIR6728
SE_02_139700151 chr1:9278132-9332023 53891 151 10 1772 102 4 111 188 SPSB1,H6PD
SE_02_139700048 chr10:103745218-103853762 108544 48 26 2837 273 9 405 575 SH3PXD2A,SH3PXD2A-AS1
SE_02_139700012 chr10:120978434-120996772 18338 12 2 502 29 3 36 0 WDR11-AS1
SE_02_139700028 chr10:121063638-121081369 17731 28 3 505 18 2 54 0 WDR11-AS1
SE_02_139700015 chr10:121154681-121160277 5596 15 1 189 2 0 44 0 WDR11-AS1
SE_02_139700003 chr10:121235428-121264395 28967 3 5 807 43 0 86 0 FGFR2
SE_02_139700064 chr10:121324160-121327068 2908 64 1 94 1 0 5 0 FGFR2
SE_02_139700002 chr10:121522824-121611602 88778 2 15 2555 22 26 529 740 FGFR2
SE_02_139700107 chr10:14532215-14592955 60740 107 12 1924 151 11 73 228 FAM107B
SE_02_139700112 chr10:32943787-32983849 40062 112 7 1045 105 8 57 318 ITGB1
SE_02_139700060 chr10:43395160-43421981 26821 60 6 776 86 0 78 707 HNRNPF,ZNF487,FXYD4
SE_02_139700166 chr10:72292446-72333362 40916 166 7 1138 77 0 80 133 DNAJB12,DDIT4
SE_02_139700150 chr11:118909692-118930372 20680 150 3 478 38 2 357 365 BCL9L,MIR4492,CXCR5,UPK2,FOXR1
SE_02_139700123 chr11:126345545-126417235 71690 123 14 1999 177 10 182 1492 DCPS,ST3GAL4-AS1,ST3GAL4
SE_02_139700010 chr11:34924234-34938704 14470 10 3 409 111 0 21 37 PDHX,MIR1343,APIP
SE_02_139700001 chr11:34975218-35062267 87049 1 11 2536 280 7 192 170 PDHX,MIR1343
SE_02_139700074 chr11:35077542-35085179 7637 74 2 200 17 0 46 0 LOC100507144
SE_02_139700005 chr11:35138363-35183997 45634 5 11 1394 86 15 269 351 CD44,LOC100507144
SE_02_139700025 chr11:35259970-35277443 17473 25 2 516 32 1 89 152 SLC1A2,CD44
SE_02_139700093 chr11:35322923-35338328 15405 93 4 458 25 3 36 0 SLC1A2
SE_02_139700079 chr11:62537746-62558367 20621 79 4 493 36 2 194 185 AHNAK,EEF1G,TUT1,MTA2,MIR6747
SE_02_139700053 chr11:65417796-65458011 40215 53 5 1094 91 2 46 2791 NEAT1,MIR612,MALAT1,SLC25A45,FRMD8
SE_02_139700023 chr11:65471277-65509326 38049 23 7 1085 112 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612
SE_02_139700143 chr11:68296768-68366020 69252 143 13 2076 166 2 160 705 LRP5,C11ORF24
SE_02_139700110 chr11:69636077-69654949 18872 110 2 581 13 2 151 1149 CCND1,ORAOV1,FGF19
SE_02_139700155 chr11:69939377-70001225 61848 155 12 1979 69 5 103 0 LOC101928443
SE_02_139700165 chr11:9564899-9576017 11118 165 1 272 25 1 86 475 WEE1
SE_02_139700069 chr12:104271921-104303390 31469 69 5 798 76 1 24 271 TXNRD1,EID3
SE_02_139700153 chr12:106274507-106307675 33168 153 7 946 65 4 51 304 TCP11L2,POLR3B,CKAP4
SE_02_139700080 chr12:122862105-122896737 34632 80 3 960 52 0 99 1095 VPS37B,HIP1R
SE_02_139700046 chr12:124904478-124941591 37113 46 6 1284 49 4 71 1108 MIR5188,UBC,SCARB1,DHX37
SE_02_139700105 chr12:52143481-52169016 25535 105 7 810 46 0 31 25 KRT80,OR7E47P,LINC00592,C12ORF80
SE_02_139700033 chr12:52859149-52928804 69655 33 11 2103 271 5 168 1059 KRT8,KRT18,KRT4,KRT79,KRT78
SE_02_139700158 chr12:56677267-56689764 12497 158 2 423 25 0 49 291 PTGES3,NACA,BAZ2A,ATP5B,SNORD59B,SNORD59A
SE_02_139700095 chr12:89325922-89391814 65892 95 14 1613 129 7 424 485 DUSP6
SE_02_139700092 chr13:27943183-27969987 26804 92 5 665 43 1 102 776 ATP5EP2,CDX2,PDX1-AS1,PDX1,URAD
SE_02_139700068 chr13:97221709-97260866 39157 68 8 911 30 4 237 79 MBNL2,LINC00456
SE_02_139700054 chr14:102510008-102568615 58607 54 8 1803 188 2 19 113 MIR4309,RCOR1,ANKRD9
SE_02_139700116 chr14:31228581-31266150 37569 116 8 978 74 1 65 0 HECTD1
SE_02_139700056 chr14:37582371-37600154 17783 56 1 386 21 6 247 735 TTC6,FOXA1
SE_02_139700106 chr14:49866353-49912532 46179 106 9 1152 58 1 136 554 ARF6,NEMF,RN7SL2
SE_02_139700061 chr14:49945578-50018989 73411 61 11 1988 152 5 130 1160 LINC01588,LINC01599,MIR6076
SE_02_139700034 chr14:55072218-55132199 59981 34 13 1547 180 32 55 147 LGALS3,SOCS4,WDHD1,MAPK1IP1L
SE_02_139700086 chr14:68780283-68796481 16198 86 4 493 18 5 259 1030 ZFP36L1
SE_02_139700101 chr14:75276405-75302235 25830 101 6 691 50 1 277 859 LINC01220,FOS
SE_02_139700163 chr15:59255219-59305967 50748 163 9 1751 63 3 103 103 MYO1E,LDHAL6B
SE_02_139700041 chr15:60360769-60433220 72451 41 18 1929 149 7 208 891 ANXA2,ICE2,RORA-AS1
SE_02_139700050 chr15:63459420-63515479 56059 50 10 1544 139 6 236 198 USP3
SE_02_139700057 chr15:67011688-67150680 138992 57 27 3801 248 29 410 400 SMAD3
SE_02_139700160 chr15:80678457-80710583 32126 160 9 861 56 1 76 282 ABHD17C
SE_02_139700094 chr15:89087563-89134187 46624 94 12 1318 66 2 138 528 ABHD2
SE_02_139700078 chr15:92801265-92845571 44306 78 6 1360 36 0 52 0 LINC01578,ASB9P1
SE_02_139700130 chr16:67428914-67466383 37469 130 6 854 72 2 277 1643 HSD11B2,ATP6V0D1,ZDHHC1,AGRP,TPPP3
SE_02_139700022 chr16:81478476-81605154 126678 22 26 5032 177 26 204 95 MIR7854,CMIP,MIR6504
SE_02_139700126 chr16:85416133-85493097 76964 126 13 3138 94 3 209 0 MIR5093
SE_02_139700103 chr16:85513961-85570873 56912 103 10 2102 45 0 296 0 GSE1
SE_02_139700102 chr16:85599218-85653104 53886 102 12 2579 43 0 213 598 GSE1,GINS2
SE_02_139700152 chr16:89814495-89865378 50883 152 8 1899 259 6 86 1872 SPIRE2,FANCA,TCF25
SE_02_139700147 chr17:41645642-41667620 21978 147 5 601 51 0 46 0 EIF1,GAST,KRT17,KRT16,KRT42P
SE_02_139700011 chr17:43231474-43301681 70207 11 13 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_139700099 chr17:50883776-50952604 68828 99 13 1911 160 4 180 0 TOB1-AS1,TOB1,WFIKKN2
SE_02_139700063 chr17:59827489-59859961 32472 63 6 753 66 2 112 310 TUBD1,MIR21,VMP1,RPS6KB1
SE_02_139700115 chr18:11978941-12016591 37650 115 10 1267 164 6 49 601 IMPA2
SE_02_139700065 chr19:11085325-11096119 10794 65 3 299 10 9 6 318 LDLR,MIR6886
SE_02_139700145 chr19:12776845-12796684 19839 145 4 449 38 1 305 526 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1
SE_02_139700088 chr19:13142619-13172582 29963 88 7 769 52 2 110 1279 IER2,STX10,LYL1,TRMT1,NACC1
SE_02_139700018 chr19:13838568-13856513 17945 18 1 494 38 1 174 0 NANOS3,C19ORF57,LOC284454,MIR23A,ZSWIM4,MIR27A,MIR24-2,MIR181D,MIR181C,CC2D1A
SE_02_139700118 chr19:1853453-1876400 22947 118 4 707 53 2 47 708 KLF16,ATP8B3,REXO1,LOC100288123,ADAT3,MIR1909,SCAMP4,ABHD17A
SE_02_139700169 chr19:19590912-19629746 38834 169 6 894 68 3 76 1205 GMIP,LPAR2,PBX4,ZNF101,ATP13A1
SE_02_139700113 chr19:33273704-33324713 51009 113 11 1472 113 3 392 1271 CEBPA-AS1,CEBPA,CEBPG,SLC7A10
SE_02_139700042 chr19:38631645-38701853 70208 42 16 2020 202 7 271 702 EIF3K,ACTN4,CAPN12,MAP4K1
SE_02_139700133 chr19:39397843-39411798 13955 133 3 339 18 0 188 1177 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1
SE_02_139700138 chr19:41732381-41793529 61148 138 16 1715 153 3 58 675 CEACAM6,CEACAM5,CEACAM3,CEACAM7
SE_02_139700032 chr19:45439392-45485936 46544 32 8 1262 133 1 328 1486 RTN2,FOSB,CD3EAP,VASP,PPP1R13L,PPM1N,ERCC1,MIR6088
SE_02_139700172 chr19:45505366-45578576 73210 172 12 2160 206 9 190 3070 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_02_139700085 chr19:47089682-47114520 24838 85 4 729 18 1 190 624 ZC3H4,TMEM160,SAE1
SE_02_139700171 chr19:48866198-48876223 10025 171 2 356 60 2 60 965 PLEKHA4,PPP1R15A,NUCB1,TULP2,HSD17B14,NUCB1-AS1
SE_02_139700156 chr19:56105080-56143408 38328 156 6 1261 34 5 83 318 ZNF444,ZNF787,ZSCAN5B,LOC101928886,GALP
SE_02_139700081 chr19:6055644-6069088 13444 81 3 358 25 1 23 0 RFX2
SE_02_139700117 chr2:156319611-156343479 23868 117 5 512 9 1 518 1310 NR4A2
SE_02_139700167 chr2:177240191-177273537 33346 167 6 818 58 0 91 478 NFE2L2,MIR3128,MIR4444-1,MIR6512,HNRNPA3
SE_02_139700139 chr2:20179398-20233765 54367 139 10 1802 155 7 241 1265 SDC1
SE_02_139700096 chr2:231603264-231622286 19022 96 4 519 47 0 91 0 C2ORF57
SE_02_139700024 chr2:231639677-231683058 43381 24 9 1295 28 2 70 0 PTMA,MIR1244-2,C2ORF57
SE_02_139700070 chr2:231701877-231713089 11212 70 2 423 16 1 143 999 PTMA,MIR1244-2
SE_02_139700051 chr2:238273583-238310597 37014 51 7 1127 89 0 110 451 PER2,HES6,LOC643387,LOC151174,TRAF3IP1
SE_02_139700019 chr2:43153258-43229399 76141 19 15 2670 92 3 342 1185 LINC01126,ZFP36L2
SE_02_139700077 chr2:47339633-47373036 33403 77 7 1165 74 0 31 366 LOC101927043,EPCAM,MIR559,MSH2,BCYRN1
SE_02_139700031 chr2:54523099-54614673 91574 31 16 2708 333 8 191 786 SPTBN1,RPL23AP32
SE_02_139700082 chr2:65350236-65437388 87152 82 20 2346 183 38 309 405 SPRED2
SE_02_139700141 chr2:70069098-70110097 40999 141 6 1157 94 0 163 800 PCBP1-AS1,PCBP1,LOC100133985
SE_02_139700087 chr2:85498357-85543740 45383 87 9 1322 183 5 155 832 PARTICL,MAT2A,VAMP8,GGCX,VAMP5
SE_02_139700164 chr2:8676110-8686193 10083 164 2 329 9 0 257 321 ID2,ID2-AS1
SE_02_139700071 chr2:95890791-95919055 28264 71 6 799 51 0 0 782 ANKRD36C,LINC00342
SE_02_139700114 chr20:17556725-17572955 16230 114 2 457 16 1 71 487 DSTN,BFSP1
SE_02_139700132 chr20:19734416-19759467 25051 132 3 690 60 9 21 0 RIN2
SE_02_139700058 chr20:31586172-31613607 27435 58 4 832 80 4 172 400 MIR3193,ID1,COX4I2,MCTS2P,HM13-AS1
SE_02_139700104 chr20:36063954-36104554 40600 104 6 948 66 0 115 224 EPB41L1,LINC00657
SE_02_139700040 chr20:47296057-47361566 65509 40 11 1812 8 3 221 1428 ZMYND8,LOC100131496
SE_02_139700154 chr20:49672419-49718675 46256 154 11 1224 97 3 63 196 B4GALT5
SE_02_139700052 chr20:49908831-49938404 29573 52 5 748 104 1 46 365 SPATA2,RNF114,SNAI1
SE_02_139700073 chr20:53578679-53624478 45799 73 6 1118 8 1 169 449 ZNF217,LOC101927770
SE_02_139700084 chr20:53736782-53809976 73194 84 13 2172 29 8 40 0 SUMO1P1
SE_02_139700161 chr20:63533868-63546071 12203 161 2 475 42 0 74 1313 PTK6,SRMS,PPDPF,EEF1A2,C20ORF195,HELZ2
SE_02_139700072 chr3:149364936-149408498 43562 72 11 1185 81 4 114 464 TM4SF1-AS1,TM4SF1,TM4SF18
SE_02_139700100 chr3:57949621-58060314 110693 100 24 3105 250 13 158 195 FLNB
SE_02_139700137 chr4:76663419-76714760 51341 137 9 1099 87 10 92 228 SHROOM3,MIR548AH
SE_02_139700111 chr5:42980194-43009948 29754 111 7 866 114 3 0 499 FLJ32255,LOC153684,ANXA2R,LOC648987
SE_02_139700091 chr5:747044-760419 13375 91 2 499 51 0 29 0 TPPP
SE_02_139700157 chr6:106494754-106548700 53946 157 10 1573 294 8 151 1040 AIM1
SE_02_139700035 chr6:158848211-158871012 22801 35 3 604 37 2 41 128 C6ORF99,OSTCP1,EZR,EZR-AS1
SE_02_139700128 chr6:2981483-3002007 20524 128 2 608 91 0 2 635 LINC01011,NQO2,HTATSF1P2,SERPINB6
SE_02_139700038 chr6:3355415-3422410 66995 38 16 1880 149 11 208 110 SLC22A23
SE_02_139700170 chr6:52388698-52421732 33034 170 5 810 130 9 98 810 PAQR8,EFHC1
SE_02_139700140 chr6:73514756-73524753 9997 140 2 323 32 3 107 658 EEF1A1
SE_02_139700125 chr7:105002994-105015892 12898 125 5 392 14 0 94 724 KMT2E,KMT2E-AS1,LINC01004
SE_02_139700017 chr7:130884100-130944393 60293 17 8 1673 108 7 199 188 LINC-PINT,LOC100506860,MIR29A,MIR29B1
SE_02_139700027 chr7:16790185-16823736 33551 27 5 1117 157 10 97 362 AGR2,TSPAN13
SE_02_139700168 chr7:22323146-22378545 55399 168 14 1554 106 3 219 133 RAPGEF5
SE_02_139700131 chr7:2508248-2535290 27042 131 5 942 45 1 232 1739 LFNG,MIR4648,IQCE,BRAT1,GRIFIN
SE_02_139700127 chr7:47530141-47588829 58688 127 12 1702 44 2 130 227 TNS3,LINC01447
SE_02_139700142 chr7:51289327-51318094 28767 142 5 799 33 2 65 189 COBL
SE_02_139700075 chr7:5418046-5430795 12749 75 2 381 3 0 256 846 TNRC18
SE_02_139700044 chr7:55064640-55110997 46357 44 11 1369 71 10 127 54 EGFR
SE_02_139700045 chr7:73772807-73833940 61133 45 9 1516 180 3 65 947 CLDN4,ABHD11,WBSCR28,ABHD11-AS1,WBSCR27,CLDN3
SE_02_139700047 chr7:76345562-76404487 58925 47 7 1703 211 3 171 1463 ZP3,YWHAG,SSC4D,HSPB1
SE_02_139700049 chr7:794079-836520 42441 49 9 1619 191 3 8 388 SUN1,GET4
SE_02_139700037 chr7:98343115-98419986 76871 37 16 2195 181 4 115 344 BAIAP2L1
SE_02_139700136 chr7:99207841-99230943 23102 136 4 616 97 1 2 0 MYH16,KPNA7
SE_02_139700135 chr8:100944294-100955553 11259 135 2 337 26 1 72 706 YWHAZ
SE_02_139700121 chr8:101002639-101028870 26231 121 5 793 57 0 55 0 FLJ42969,YWHAZ
SE_02_139700036 chr8:101062777-101168373 105596 36 18 2931 77 13 170 291 FLJ42969,ZNF706
SE_02_139700120 chr8:101491021-101506517 15496 120 3 401 6 2 96 116 GRHL2
SE_02_139700006 chr8:126532331-126573728 41397 6 8 1151 33 12 214 905 FAM84B
SE_02_139700014 chr8:127292794-127312272 19478 14 4 625 2 4 129 0 CASC21,CASC8
SE_02_139700009 chr8:127492975-127513463 20488 9 3 657 2 4 55 0 CASC8
SE_02_139700007 chr8:127563719-127597472 33753 7 8 1023 0 3 76 0 CASC8
SE_02_139700066 chr8:127623232-127631165 7933 66 2 216 0 0 20 0 CASC11
SE_02_139700016 chr8:127650444-127672901 22457 16 5 687 6 1 60 0 CASC11
SE_02_139700149 chr8:127706705-127708743 2038 149 1 51 0 1 13 0 CASC11,MYC
SE_02_139700008 chr8:127727110-127743576 16466 8 4 450 2 0 112 734 CASC11,MYC
SE_02_139700004 chr8:127781925-127832488 50563 4 9 1377 53 5 76 207 MIR1204,MYC,CASC11
SE_02_139700013 chr8:127845837-127928932 83095 13 16 2460 31 8 129 205 PVT1,MIR1205,MIR1204,TMEM75
SE_02_139700021 chr8:127949707-127976846 27139 21 5 831 29 2 30 50 PVT1,MIR1205,MIR1206,TMEM75
SE_02_139700129 chr8:128025013-128038072 13059 129 4 407 0 1 10 0 PVT1,MIR1206,MIR1207
SE_02_139700090 chr8:143933903-143956971 23068 90 4 790 71 2 250 2179 PLEC,MIR661,PARP10,GRINA
SE_02_139700083 chr8:61709295-61785693 76398 83 18 2127 108 1 58 611 ASPH,MIR4470
SE_02_139700124 chr9:129458706-129497270 38564 124 7 1137 72 0 122 419 LINC00963
SE_02_139700098 chr9:133123357-133150279 26922 98 5 834 66 0 102 515 RALGDS,GBGT1,CELP

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4851921
Input ID: Name:GSM4851925
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb