SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000244502
Gene: HDAC11-AS1 Gene type: lncRNA
Strand: - External links:
Genomic region: chr3:13476982-13480053 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_104700027 chr3:13300209-13431780 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 27 81 3927 313 7 316 4228 NUP210,HDAC11-AS1,HDAC11
SE_02_104900032 chr3:13305663-13455521 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 32 117 4470 392 9 287 4228 NUP210,HDAC11-AS1,HDAC11
SE_02_104300065 chr3:13305948-13452878 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 65 94 4388 385 9 287 4228 NUP210,HDAC11-AS1,HDAC11
SE_02_104800038 chr3:13314912-13435485 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 38 55 3566 291 7 286 4228 NUP210,HDAC11-AS1,HDAC11
SE_02_122900409 chr3:13388574-13432414 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 409 25 1239 146 4 36 498 NUP210,HDAC11-AS1,HDAC11
SE_04_000100583 chr3:13402657-13432347 Sample_04_0001 Blood heat shocked K562 583 3 784 110 4 16 178 NUP210,HDAC11-AS1,HDAC11
SE_04_000200369 chr3:13403188-13456176 Sample_04_0002 Blood cold shocked K562 369 8 1469 196 6 16 178 NUP210,HDAC11-AS1,HDAC11
SE_02_111600349 chr3:13403301-13431702 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 349 3 750 107 4 16 178 NUP210,HDAC11-AS1,HDAC11
SE_02_113000702 chr3:13403649-13431717 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 702 5 734 107 4 16 178 NUP210,HDAC11-AS1,HDAC11
SE_02_054500928 chr3:13404118-13432450 Sample_02_0545 Bone marrow K562 WT 928 5 733 110 4 16 178 NUP210,HDAC11-AS1,HDAC11
SE_02_104200409 chr3:13407499-13436564 Sample_02_1042 Peripheral blood CD4+ cells_CTCL1137 409 12 764 125 4 16 178 NUP210,HDAC11-AS1,HDAC11
SE_02_127300272 chr3:13411758-13434037 Sample_02_1273 Cervix HeLa 272 9 575 88 4 15 178 NUP210,HDAC11-AS1,HDAC11
SE_02_153900595 chr3:13413851-13433864 Sample_02_1539 Nasopharyngeal C666-1 595 10 506 76 4 15 178 NUP210,HDAC11-AS1,HDAC11
SE_02_109900782 chr3:13418043-13431780 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 782 5 336 49 4 7 178 NUP210,HDAC11-AS1,HDAC11
SE_02_110200057 chr3:13483134-13600987 Sample_02_1102 Brain LA-N-5 57 49 3679 181 11 223 2098 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_111100027 chr3:13483214-13665833 Sample_02_1111 Other HGrC1_SMAD2/3KO 27 67 5865 341 20 394 4119 FBLN2,LINC00620,HDAC11,HDAC11-AS1
SE_02_102900692 chr3:13483325-13576573 Sample_02_1029 Colon HCT116 692 28 2933 162 9 212 2084 FBLN2,HDAC11,HDAC11-AS1
SE_02_057601056 chr3:13483645-13602275 Sample_02_0576 Blood HEL_sgLKB1e2 1056 38 3710 190 12 218 2001 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_103200149 chr3:13484003-13562580 Sample_02_1032 Head and neck SCC1 JQ1 149 28 2420 135 6 158 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_076800119 chr3:13484218-13580540 Sample_02_0768 Ovary SKOV3 119 37 3064 164 9 207 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_153900102 chr3:13484334-13552630 Sample_02_1539 Nasopharyngeal C666-1 102 23 2095 111 6 135 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_102500197 chr3:13484575-13547324 Sample_02_1025 Esophagus KYSE150 197 15 1961 95 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_064000089 chr3:13484598-13557852 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 89 16 2267 125 6 146 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_144500840 chr3:13484705-13547561 Sample_02_1445 Adipose SW872_TAZ4SA 840 15 1962 96 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_154100366 chr3:13484715-13547500 Sample_02_1541 Nasopharyngeal HNE1 366 21 1962 96 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_087200196 chr3:13484729-13539163 Sample_02_0872 Colon HCT116_siCtrl-5FU 196 11 1666 62 5 107 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_119900276 chr3:13484821-13545671 Sample_02_1199 Brain GBM35 276 11 1909 94 6 119 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_061400126 chr3:13484822-13583723 Sample_02_0614 Liposarcoma MLPS_T2 126 42 3146 165 9 207 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_078000054 chr3:13484840-13547349 Sample_02_0780 Liver SMMC-7721 54 11 1953 95 6 125 1265 HDAC11,FBLN2,HDAC11-AS1
SE_02_142800762 chr3:13484860-13560614 Sample_02_1428 Shoulder fibroblast_316 762 20 2340 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_044200575 chr3:13484871-13563987 Sample_02_0442 Bone MG63.3 575 26 2438 137 6 158 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_116900416 chr3:13484902-13557259 Sample_02_1169 Biliary H69_TGF beta_16h_2 416 18 2244 124 6 144 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_046600066 chr3:13484948-13630461 Sample_02_0466 Adipose visceral adipocytes 66 84 4607 242 16 304 3377 FBLN2,HDAC11,LINC00620,HDAC11-AS1
SE_02_142700354 chr3:13484977-13560740 Sample_02_1427 Shoulder fibroblast_343 354 21 2341 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_100500318 chr3:13484988-13496215 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 318 8 342 11 3 8 0 HDAC11,HDAC11-AS1
SE_02_155200223 chr3:13485033-13560710 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 223 23 2339 131 6 148 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_061300201 chr3:13485138-13556780 Sample_02_0613 Liposarcoma MLPS_T1 201 27 2225 124 6 144 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_142600414 chr3:13485199-13560491 Sample_02_1426 Shoulder fibroblast_341 414 13 2326 131 6 147 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_086900229 chr3:13485378-13599538 Sample_02_0869 Fibroblast VH10_NO_UV 229 34 3576 177 11 213 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_110300134 chr3:13485404-13600541 Sample_02_1103 Brain NB-1643 134 52 3608 178 11 213 1982 FBLN2,HDAC11,HDAC11-AS1
SE_02_156600184 chr3:13496503-13560588 Sample_02_1566 Dermal Dermal fibroblast 184 14 1985 120 3 139 1406 FBLN2,HDAC11,HDAC11-AS1
SE_02_138400528 chr3:13496602-13536177 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 528 12 1217 39 2 87 1251 HDAC11,FBLN2,HDAC11-AS1
SE_02_056900440 chr3:13496613-13546198 Sample_02_0569 Periodontal ligament mesenchymal stem cell 440 25 1563 81 3 110 1249 HDAC11,FBLN2,HDAC11-AS1
SE_02_063700504 chr3:13496628-13545057 Sample_02_0637 Fibroblast fibroblast_WT_GM07492 504 15 1530 79 3 110 1246 HDAC11,FBLN2,HDAC11-AS1
SE_02_086800094 chr3:13496636-13560091 Sample_02_0868 Bone marrow Bone marrow derived hMSC_d10 94 33 1961 118 3 138 1385 FBLN2,HDAC11,HDAC11-AS1
SE_02_045200563 chr3:13496650-13547041 Sample_02_0452 Skin hTERT immortalised human skin fibroblasts_Non-tumourigenic 563 7 1583 82 3 116 1240 HDAC11,FBLN2,HDAC11-AS1
SE_02_063600248 chr3:13497347-13547366 Sample_02_0636 Skin BJ5ta 248 11 1567 83 3 111 1145 HDAC11,FBLN2,HDAC11-AS1
SE_02_133500103 chr3:13500320-13547194 Sample_02_1335 Lung NCI-H1299_wtSMARCA4_Dox 103 12 1464 76 3 106 1054 HDAC11,FBLN2,HDAC11-AS1
SE_02_052700235 chr3:13500912-13546428 Sample_02_0527 Mammary gland MCF7_WT 235 21 1429 75 3 92 965 HDAC11,FBLN2,HDAC11-AS1
SE_02_157800308 chr3:13503863-13540856 Sample_02_1578 Mammary gland MCF7_DAC+455 308 9 1140 47 2 76 770 HDAC11,FBLN2,HDAC11-AS1
SE_02_061500802 chr3:13504139-13556755 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 802 11 1634 102 3 108 869 FBLN2,HDAC11,HDAC11-AS1
SE_02_113200559 chr3:13504234-13547621 Sample_02_1132 Pancreas KLM1 wt 559 19 1360 74 3 82 705 HDAC11,FBLN2,HDAC11-AS1
SE_02_101600342 chr3:13504626-13595172 Sample_02_1016 Embryo H9_Mesendoderm_24h 342 16 2865 146 8 165 1339 FBLN2,HDAC11,HDAC11-AS1
SE_02_083900507 chr3:13504782-13547340 Sample_02_0839 Embryo hNPCs_K755R/+ 507 12 1340 73 3 78 585 HDAC11,FBLN2,HDAC11-AS1
SE_02_060600746 chr3:13504794-13547184 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 746 9 1335 73 3 78 580 HDAC11,FBLN2,HDAC11-AS1
SE_01_011300085 chr3:13505075-13540427 Sample_01_0113 Mammary gland MCF-7 85 13 1096 44 2 60 511 HDAC11,FBLN2,HDAC11-AS1
SE_02_114000121 chr3:13505080-13513231 Sample_02_1140 Peripheral nerve MPNST007_PRC2 WT 121 2 229 7 0 3 375 HDAC11,FBLN2,HDAC11-AS1
SE_02_087300249 chr3:13505096-13540822 Sample_02_0873 Colon HCT116_siGLIS2.1-5FU 249 8 1111 46 2 63 507 HDAC11,FBLN2,HDAC11-AS1
SE_02_114500726 chr3:13506842-13547036 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 726 14 1285 72 3 76 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_060501214 chr3:13507532-13547312 Sample_02_0605 Skin Skin Fibroblast_DMSO 1214 8 1275 71 3 76 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_090800857 chr3:13512860-13582780 Sample_02_0908 Heart left ventricle_DCM_LV1262 857 33 2278 136 6 157 851 FBLN2,HDAC11-AS1,HDAC11
SE_02_091301278 chr3:13512932-13560718 Sample_02_0913 Heart left ventricle_DCM_LV1304 1278 24 1501 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_091800748 chr3:13512948-13560515 Sample_02_0918 Heart left ventricle_DCM_LV1437 748 19 1494 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_061100425 chr3:13512983-13575673 Sample_02_0611 Liposarcoma DDLPS_T1 425 36 2024 132 6 157 851 FBLN2,HDAC11-AS1,HDAC11
SE_02_142500255 chr3:13513010-13560613 Sample_02_1425 Shoulder fibroblast_384 255 17 1495 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_091900972 chr3:13513016-13560745 Sample_02_0919 Heart left ventricle_DCM_LV1532 972 16 1500 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_091500500 chr3:13513097-13560713 Sample_02_0915 Heart left ventricle_DCM_LV1371 500 26 1496 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_112900277 chr3:13513209-13560496 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 277 22 1487 102 3 98 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_086700972 chr3:13513235-13546453 Sample_02_0867 Bone marrow Bone marrow derived hMSC_d0 972 13 1082 65 3 69 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_126401564 chr3:13513527-13545413 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1564 6 1043 62 2 59 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_091700764 chr3:13513597-13560844 Sample_02_0917 Heart left ventricle_DCM_LV1433 764 17 1483 101 2 88 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_090900955 chr3:13513741-13560755 Sample_02_0909 Heart left ventricle_DCM_LV1264 955 15 1479 101 2 87 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_088901266 chr3:13513760-13561202 Sample_02_0889 Heart left ventricle_LV1183 1266 19 1489 102 2 88 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_090600840 chr3:13515271-13560624 Sample_02_0906 Heart left ventricle_DCM_LV1072 840 19 1425 98 1 82 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_090000961 chr3:13515286-13560722 Sample_02_0900 Heart left ventricle_LV1452 961 16 1429 98 1 82 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_090401572 chr3:13515340-13560782 Sample_02_0904 Heart left ventricle_DCM_LV1028 1572 21 1428 98 1 83 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_103100520 chr3:13524718-13555268 Sample_02_1031 Head and neck SCC1 contol 520 13 957 78 1 61 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_106700226 chr3:13524887-13546085 Sample_02_1067 Bone SJSA-1 226 10 700 51 1 36 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_135500630 chr3:13525200-13548950 Sample_02_1355 Umbilical cord umbilical cord-derived mesenchymal stem cells_old 630 3 753 56 1 42 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_113300512 chr3:13525243-13560534 Sample_02_1133 Liver Hepatic stellate cells 512 4 1104 88 1 65 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_135600444 chr3:13525532-13549009 Sample_02_1356 Umbilical cord umbilical cord-derived mesenchymal stem cells_Young 444 3 749 57 1 42 148 FBLN2,HDAC11-AS1,HDAC11
SE_02_138000718 chr3:13526047-13559664 Sample_02_1380 Pancreas Pancreatic_tumor_associated_fibroblasts_CW1_untreated 718 13 1064 87 1 64 275 FBLN2,HDAC11-AS1,HDAC11
SE_02_133700257 chr3:13526113-13547145 Sample_02_1337 Lung NCI-H1299-wtSMARCA4_Dox_SAHA 257 6 697 52 1 42 134 FBLN2,HDAC11-AS1,HDAC11
SE_02_107100362 chr3:13526318-13558363 Sample_02_1071 Blood Jurkat_WT 362 7 1021 83 1 62 275 FBLN2,HDAC11-AS1,HDAC11
Genomic distribution of SEs associated with HDAC11-AS1
Genome Browser

The strength of the tissue affected by the gene

Expression of HDAC11-AS1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)