SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000177464
Gene: GPR4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:45589764-45602212 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_088600428 chr19:45504772-45552236 Sample_02_0886 Skin foreskin_ p63KLF4 428 16 1415 136 4 170 2725 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_02_024200270 chr19:45504892-45586969 Sample_02_0242 Colon V481 270 9 2451 233 9 235 3198 OPA3,VASP,PPM1N,FOSB,RTN2,GPR4
SE_02_066000069 chr19:45505256-45584375 Sample_02_0660 Mammary gland MCF10DCIS 69 24 2345 223 9 193 3070 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_02_139700172 chr19:45505366-45578576 Sample_02_1397 Stomach SNU16 172 12 2160 206 9 190 3070 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_02_050600228 chr19:45505597-45577611 Sample_02_0506 Esophagus TE5_1 228 27 2128 206 9 190 3070 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_02_022800263 chr19:45505819-45570362 Sample_02_0228 Oesophagus KYSE510 263 9 1892 181 7 182 3070 OPA3,VASP,PPM1N,FOSB,RTN2,GPR4
SE_02_050400237 chr19:45506016-45569998 Sample_02_0504 Esophagus KYSE510_1 237 19 1876 177 7 182 3070 OPA3,VASP,GPR4,PPM1N,FOSB,RTN2
SE_01_005800788 chr19:45509388-45579600 Sample_01_0058 Prostate PC-3 788 8 2081 204 9 124 2864 OPA3,VASP,PPM1N,FOSB,RTN2,GPR4
SE_02_051700721 chr19:45540856-45577610 Sample_02_0517 Esophagus TE5 721 14 1093 113 5 20 1344 OPA3,GPR4,VASP,PPM1N,RTN2
SE_02_021601071 chr19:45543087-45569938 Sample_02_0216 Skin NHEK_scramble 1071 6 778 69 3 12 1344 OPA3,PPM1N,RTN2,GPR4,VASP
SE_02_090201136 chr19:45543836-45579381 Sample_02_0902 Heart left ventricle_LV1558 1136 13 1045 97 5 20 1344 OPA3,PPM1N,VASP,GPR4,RTN2
SE_02_042300281 chr19:45543855-45584407 Sample_02_0423 Skin A375 281 12 1208 112 5 23 1344 OPA3,PPM1N,RTN2,GPR4,VASP
SE_02_005600829 chr19:45546783-45581991 Sample_02_0056 Mammary gland HMEC 829 10 1047 97 5 22 1288 OPA3,PPM1N,RTN2,GPR4,VASP
SE_02_082700336 chr19:45547892-45576562 Sample_02_0827 Stomach normal gastric 336 6 828 83 4 20 1102 OPA3,PPM1N,VASP,GPR4
SE_02_104301554 chr19:45556581-45582515 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 1554 20 759 73 4 10 0 OPA3,GPR4,VASP
SE_02_138100651 chr19:45557207-45588010 Sample_02_1381 Pancreas Pancreatic cancer cells_DMSO 651 17 922 87 4 53 128 OPA3,GPR4,VASP
SE_02_122901161 chr19:45558841-45589211 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 1161 17 919 89 4 56 128 OPA3,GPR4,MIR330,QPCTL,ERCC1,PPP1R13L,CD3EAP,SNRPD2,EML2,VASP
SE_00_005200999 chr19:45560524-45579080 Sample_00_0052 Heart left ventricle 3y 999 12 530 56 3 8 0 OPA3,GPR4
SE_02_125800893 chr19:45561829-45584303 Sample_02_1258 Liver Pancreatic cancer cells derived from liver metastasis 893 9 666 70 3 11 0 OPA3,GPR4
SE_00_005700695 chr19:45562467-45578796 Sample_00_0057 Heart right ventricle 3y 695 17 473 51 3 8 0 OPA3,GPR4
SE_02_030101174 chr19:45562543-45585803 Sample_02_0301 Neuroblastoma GIMEN 1174 4 719 73 3 52 128 OPA3,GPR4
SE_02_086600313 chr19:45562939-45588817 Sample_02_0866 Malignant rhaboid tumor TTC1240_SMARCB1_delCC 313 13 801 78 3 56 128 OPA3,GPR4
SE_02_086500414 chr19:45562982-45588459 Sample_02_0865 Malignant rhaboid tumor TTC1240_SMARCB1_R377H 414 11 781 77 3 56 128 OPA3,GPR4
SE_02_086400364 chr19:45563389-45588291 Sample_02_0864 Malignant rhaboid tumor TTC1240_SMARCB1_K364del 364 8 759 74 2 56 128 OPA3,GPR4
SE_02_080800624 chr19:45563527-45588519 Sample_02_0808 Ovary RMG1_ARID1A KO 624 17 770 75 2 56 128 OPA3,GPR4
SE_02_105000499 chr19:45564230-45588174 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 499 13 748 74 2 54 128 OPA3,GPR4
SE_02_010500792 chr19:45567360-45579995 Sample_02_0105 Skin neonatal_keratinocytes 792 2 366 39 2 8 0 OPA3,GPR4
SE_02_088601142 chr19:45567425-45588034 Sample_02_0886 Skin foreskin_ p63KLF4 1142 5 638 60 2 54 128 OPA3,GPR4
SE_02_105400325 chr19:45567642-45582879 Sample_02_1054 Esophagus SKGT4 325 9 463 46 2 10 0 OPA3,GPR4
SE_02_001101046 chr19:45568090-45586055 Sample_02_0011 Kidney A-498_wtVHL 1046 6 570 56 2 53 128 OPA3,GPR4
SE_02_026800940 chr19:45568091-45586065 Sample_02_0268 Kidney A-498 940 7 570 56 2 53 128 OPA3,GPR4
SE_02_001000827 chr19:45568136-45586077 Sample_02_0010 Kidney A-498_emptyvector 827 4 569 56 2 53 128 OPA3,GPR4
SE_02_064701191 chr19:45568183-45588341 Sample_02_0647 Tracheobronchial epithelial HTBE_H1N1_mock 1191 6 628 59 2 56 128 OPA3,GPR4
SE_02_065201109 chr19:45568212-45588380 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1109 7 629 59 2 56 128 OPA3,GPR4
SE_04_001000611 chr19:45568277-45585610 Sample_04_0010 Lung A549 TGFb 611 4 551 52 2 44 128 OPA3,GPR4
SE_02_047500708 chr19:45568381-45588734 Sample_02_0475 Induced hepatocyte-like cells hepatocyte-like cells 708 3 651 61 2 56 128 OPA3,GPR4
SE_02_093801002 chr19:45568541-45579322 Sample_02_0938 Retinal Pigmented Epithelial RPE190_TnT 1002 3 322 33 2 8 0 OPA3,GPR4
SE_02_154900682 chr19:45568559-45581265 Sample_02_1549 Gastrointestinal Stromal GIST-430B 682 5 393 39 2 9 0 OPA3,GPR4
SE_02_093601060 chr19:45568702-45582980 Sample_02_0936 Retinal Pigmented Epithelial RPE188_TnT 1060 6 439 44 2 10 0 OPA3,GPR4
SE_02_020700294 chr19:45572849-45586064 Sample_02_0207 Stomach FU97 294 5 439 39 2 46 128 OPA3,GPR4
SE_02_004600276 chr19:45575891-45585570 Sample_02_0046 Embryo endodermal CyT49_ES_D10 276 3 320 27 1 36 128 OPA3,GPR4
SE_02_026900363 chr19:45576074-45587586 Sample_02_0269 Kidney HK-2 363 2 372 33 1 45 128 OPA3,GPR4
SE_00_000900875 chr19:45583448-45585992 Sample_00_0009 Blood CD8-positive-alpha-beta-T-cell 875 1 102 9 0 43 128 OPA3,GPR4
SE_02_024200995 chr19:45606693-45643506 Sample_02_0242 Colon V481 995 4 1014 61 1 204 2500 EML2,MIR330,SNRPD2,MIR642A,GPR4,QPCTL,OPA3,GIPR,MIR642B
SE_02_035200230 chr19:45606765-45643857 Sample_02_0352 Colon HCT116 230 7 1021 61 1 207 2601 EML2,MIR330,SNRPD2,MIR642A,GPR4,QPCTL,OPA3,GIPR,MIR642B
SE_02_029400948 chr19:45612827-45643667 Sample_02_0294 Pancreatic L3-6_DMSO 948 3 824 54 1 195 2438 EML2,MIR330,SNRPD2,MIR642A,GPR4,QPCTL,OPA3,GIPR,MIR642B
SE_02_078000359 chr19:45626832-45643983 Sample_02_0780 Liver SMMC-7721 359 1 447 35 1 95 1292 EML2,MIR330,EML2-AS1,OPA3,GPR4,QPCTL,MIR642A,GIPR,SNRPD2,MIR642B
SE_02_016700744 chr19:45629387-45643515 Sample_02_0167 Mammary gland HCC1954_LCC2 744 2 350 29 1 92 1154 EML2,MIR330,SNRPD2,MIR642A,GPR4,QPCTL,OPA3,GIPR,MIR642B
SE_03_000200183 chr19:45629527-45642899 Sample_03_0002 Foreskin foreskin-keratinocyte-calcium2.5day 183 2 329 29 1 92 1111 EML2,MIR330,SNRPD2,MIR642A,GPR4,QPCTL,OPA3,GIPR,MIR642B
SE_02_113100484 chr19:45629757-45640096 Sample_02_1131 Pancreas T3M4 wt 484 5 261 23 1 56 674 EML2,MIR330,OPA3,GPR4,GIPR,EML2-AS1,MIR642B,MIR642A
SE_02_108300961 chr19:45635986-45646728 Sample_02_1083 Macula macula 961 1 262 25 1 106 1231 EML2,MIR330,EML2-AS1,GPR4,MIR642B,QPCTL,MIR642A,GIPR,SNRPD2
SE_02_108200933 chr19:45637563-45646476 Sample_02_1082 Retina retina 933 1 224 23 1 106 1231 EML2,MIR330,EML2-AS1,GPR4,MIR642B,QPCTL,MIR642A,GIPR,SNRPD2
SE_02_117300905 chr19:45642839-45648220 Sample_02_1173 Brain GBM01 905 1 127 12 0 46 504 EML2,GPR4,MIR642B,QPCTL,MIR642A,GIPR,EML2-AS1,SNRPD2,MIR330
SE_02_077500224 chr19:45651099-45663586 Sample_02_0775 Pancreas EndoC-BH1_SE 224 1 417 114 3 12 0 GPR4,MIR642B,QPCTL,MIR642A,GIPR,EML2-AS1,EML2,SNRPD2,MIR330
Genomic distribution of SEs associated with GPR4
Genome Browser

The strength of the tissue affected by the gene

Expression of GPR4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)