SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000236289
Gene: GACAT3 Gene type: lncRNA
Strand: + External links:
Genomic region: chr2:16013928-16087201 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_069200002 chr2:15936270-16039334 Sample_02_0692 Lung NCI-H526_no infection 2 29 3036 21 10 504 1020 MYCN,MYCNOS,MYCNUT,GACAT3
SE_02_125300527 chr2:15939532-16034758 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 527 24 2829 19 9 453 1020 MYCN,MYCNOS,MYCNUT,GACAT3
SE_02_077501752 chr2:15944901-16002237 Sample_02_0775 Pancreas EndoC-BH1_SE 1752 18 1684 13 4 238 226 MYCN,MYCNUT,GACAT3,MYCNOS
SE_02_098600004 chr2:15965020-16015617 Sample_02_0986 Brain H3.3K27M-KO_Tumor-derived cell-line 4 13 1535 13 5 187 0 MYCNUT,MYCN,GACAT3,MYCNOS
SE_02_097600035 chr2:15965414-16015487 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 35 8 1517 13 5 187 0 MYCNUT,MYCN,GACAT3,MYCNOS
SE_02_098400003 chr2:15965487-16015371 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 3 9 1505 13 5 186 0 MYCNUT,MYCN,GACAT3,MYCNOS
SE_02_119000020 chr2:15981791-16038371 Sample_02_1190 Brain GBM24 20 12 1750 17 9 228 0 MYCN,GACAT3,MYCNOS
SE_02_141300470 chr2:15981799-16000441 Sample_02_1413 Muscle RH4_sgBRG1 470 3 597 10 4 108 0 MYCN,GACAT3,MYCNOS
SE_02_144200003 chr2:15981862-16015563 Sample_02_1442 Lung H69 3 11 1054 12 5 138 0 MYCN,GACAT3,MYCNOS
SE_02_144300003 chr2:15981865-16023151 Sample_02_1443 Lung H69M 3 12 1282 12 5 162 0 MYCN,GACAT3,MYCNOS
SE_02_069300005 chr2:15981926-16039539 Sample_02_0693 Lung NCI-H69_no infection 5 10 1784 18 9 241 0 MYCN,GACAT3,MYCNOS
SE_02_096200207 chr2:15982383-16014985 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 207 5 990 12 5 133 0 MYCN,GACAT3,MYCNOS
SE_02_097400002 chr2:15982418-16015466 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 2 8 1017 12 5 132 0 MYCN,GACAT3,MYCNOS
SE_02_097500003 chr2:15982584-16014990 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 3 6 985 12 5 131 0 MYCN,GACAT3,MYCNOS
SE_02_085701173 chr2:15983571-16015750 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1173 4 1008 12 5 128 0 MYCN,GACAT3,MYCNOS
SE_02_141700381 chr2:15983661-16014137 Sample_02_1417 Brain SF7761 381 5 930 12 5 122 0 MYCN,GACAT3,MYCNOS
SE_02_128900005 chr2:15999382-16023531 Sample_02_1289 Lung NCI-H526_p8-15 5 4 731 2 1 68 0 GACAT3
SE_02_098500008 chr2:16005685-16014982 Sample_02_0985 Brain H3.3K27M-DIPGXIII-C14 8 2 270 2 0 30 0 GACAT3
SE_02_054100183 chr2:16006478-16015674 Sample_02_0541 Brain Kelly_NaiveJQ1 183 3 298 1 0 29 0 GACAT3
SE_02_047100070 chr2:16012342-16016564 Sample_02_0471 Brain Kelly DMSO 70 1 145 1 0 30 0 GACAT3
SE_02_054200027 chr2:16012420-16015886 Sample_02_0542 Brain Kelly_ResJQ1 27 1 125 1 0 29 0 GACAT3
SE_02_069900014 chr2:16012452-16015675 Sample_02_0699 Brain Kelly_shB4_Res 14 3 119 1 0 26 0 GACAT3
SE_02_054400025 chr2:16012493-16015838 Sample_02_0544 Brain Kelly_ResVeh 25 1 123 1 0 29 0 GACAT3
SE_02_110000142 chr2:16012496-16014648 Sample_02_1100 Brain COG-N-415 142 1 58 1 0 24 0 GACAT3
SE_02_110100114 chr2:16012498-16015730 Sample_02_1101 Brain KELLY 114 1 121 1 0 26 0 GACAT3
SE_02_054300068 chr2:16012645-16014281 Sample_02_0543 Brain Kelly_vehicle 68 1 48 1 0 23 0 GACAT3
SE_02_124400146 chr2:16014024-16014349 Sample_02_1244 Brain KCNR_ATRA 146 1 15 1 0 4 0 GACAT3
SE_02_047100013 chr2:16029429-16039451 Sample_02_0471 Brain Kelly DMSO 13 1 319 5 2 59 0 GACAT3
SE_02_054400133 chr2:16029996-16032095 Sample_02_0544 Brain Kelly_ResVeh 133 1 80 1 1 12 0 GACAT3
SE_02_054200225 chr2:16029999-16031757 Sample_02_0542 Brain Kelly_ResJQ1 225 1 70 1 1 7 0 GACAT3
SE_02_110200242 chr2:16030146-16040818 Sample_02_1102 Brain LA-N-5 242 8 333 6 2 72 0 GACAT3
SE_02_054100029 chr2:16030157-16039008 Sample_02_0541 Brain Kelly_NaiveJQ1 29 3 277 4 2 55 0 GACAT3
SE_02_069900012 chr2:16030158-16038385 Sample_02_0699 Brain Kelly_shB4_Res 12 4 257 4 2 45 0 GACAT3
SE_02_054300017 chr2:16030242-16039016 Sample_02_0543 Brain Kelly_vehicle 17 4 276 4 2 55 0 GACAT3
SE_02_124400210 chr2:16030277-16030547 Sample_02_1244 Brain KCNR_ATRA 210 1 12 0 0 6 0 GACAT3
SE_02_097400211 chr2:16030488-16039456 Sample_02_0974 Brain H3.3K27M-KO_DIPGXIII-C14-nKO-Rx_PARENTAL_cells 211 3 285 5 2 53 0 GACAT3
SE_02_054200012 chr2:16032305-16039393 Sample_02_0542 Brain Kelly_ResJQ1 12 1 210 2 1 46 0 GACAT3
SE_02_054400014 chr2:16032446-16039364 Sample_02_0544 Brain Kelly_ResVeh 14 1 205 2 1 46 0 GACAT3
SE_02_110100032 chr2:16033057-16039460 Sample_02_1101 Brain KELLY 32 1 183 2 1 46 0 GACAT3
SE_02_124500078 chr2:16035716-16039348 Sample_02_1245 Brain LAN5_Ethanol 78 1 97 2 1 26 0 GACAT3
SE_02_053600051 chr2:16037489-16039031 Sample_02_0536 Brain SK-N-BE_2_-C_resistant_vehicle 51 1 42 0 0 24 0 GACAT3
SE_02_077600704 chr2:16090774-16124763 Sample_02_0776 Pancreas EndoC-BH1 704 8 1034 6 1 109 0 GACAT3
SE_02_054000008 chr2:16091296-16126254 Sample_02_0540 Brain SK-N-BE_2_-C_PI3K_engineered 8 8 1070 5 1 113 0 GACAT3
SE_02_047100033 chr2:16091969-16095924 Sample_02_0471 Brain Kelly DMSO 33 1 146 3 0 10 0 GACAT3
SE_02_074300065 chr2:16092990-16106706 Sample_02_0743 Embryo ES derived mesoderm_day2 65 2 409 3 1 55 0 GACAT3
SE_02_110100053 chr2:16093149-16095580 Sample_02_1101 Brain KELLY 53 1 100 2 0 9 0 GACAT3
SE_02_124500067 chr2:16093186-16095534 Sample_02_1245 Brain LAN5_Ethanol 67 1 97 2 0 9 0 GACAT3
SE_02_054200139 chr2:16093207-16096233 Sample_02_0542 Brain Kelly_ResJQ1 139 1 115 2 0 9 0 GACAT3
SE_02_124600213 chr2:16093226-16095512 Sample_02_1246 Brain LAN5_ATRA 213 1 92 1 0 9 0 GACAT3
SE_02_149900003 chr2:16093275-16126903 Sample_02_1499 Brain BE_2_-C 3 7 1039 4 1 110 0 GACAT3
SE_02_054400090 chr2:16093325-16095510 Sample_02_0544 Brain Kelly_ResVeh 90 1 86 1 0 9 0 GACAT3
SE_02_053500005 chr2:16093603-16106966 Sample_02_0535 Brain SK-N-BE_2_-C_naive_vehicle 5 6 389 3 1 53 0 GACAT3
SE_02_075300063 chr2:16094597-16117882 Sample_02_0753 Embryo ES-derived progenitors_FG type 63 6 708 3 1 84 0 GACAT3
SE_02_101500975 chr2:16094634-16115207 Sample_02_1015 Embryo H9_ Undifferentiated 975 5 612 3 1 63 0 GACAT3
SE_02_075600279 chr2:16094885-16116141 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 279 6 631 3 1 84 0 GACAT3
SE_02_075400390 chr2:16097331-16116798 Sample_02_0754 Embryo ES-derived progenitors Pancreatic Progenitors 1 WT 390 3 578 2 1 84 0 GACAT3
SE_02_047100081 chr2:16098604-16103530 Sample_02_0471 Brain Kelly DMSO 81 1 124 0 1 21 0 GACAT3
SE_02_124500209 chr2:16099849-16103457 Sample_02_1245 Brain LAN5_Ethanol 209 1 94 0 1 18 0 GACAT3
SE_02_054200165 chr2:16100272-16103491 Sample_02_0542 Brain Kelly_ResJQ1 165 1 83 0 1 15 0 GACAT3
SE_02_054400080 chr2:16100285-16103512 Sample_02_0544 Brain Kelly_ResVeh 80 1 83 0 1 15 0 GACAT3
Genomic distribution of SEs associated with GACAT3
Genome Browser

The strength of the tissue affected by the gene

Expression of GACAT3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)