SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000112659
Gene: CUL9 Gene type: protein_coding
Strand: + External links:
Genomic region: chr6:43182184-43224587 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143200462 chr6:43069415-43147154 Sample_02_1432 Bone A673 STAG2 WT 462 34 2018 159 3 313 2665 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2,RRP36
SE_02_045300246 chr6:43070071-43146927 Sample_02_0453 Neuroblastoma SJNB3 246 27 1994 155 3 313 2665 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2,RRP36
SE_02_111200109 chr6:43070437-43164808 Sample_02_1112 T lymphocyte THP-6 T-ALL 109 36 2437 208 3 324 3104 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2,RRP36
SE_02_110000151 chr6:43071430-43143554 Sample_02_1100 Brain COG-N-415 151 29 1862 145 3 290 2064 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2,RRP36
SE_02_033000017 chr6:43071632-43150955 Sample_02_0330 Endoderm MHG 17 19 2066 162 3 299 2390 KLC4,PTK7,CUL9,CUL7,SRF,RRP36,MRPL2
SE_02_031200379 chr6:43074401-43144586 Sample_02_0312 Neuroblastoma SK-N-BE_2-C 379 9 1817 145 3 283 1764 KLC4,PTK7,CUL9,CUL7,SRF,MRPL2
SE_02_031000068 chr6:43074647-43144666 Sample_02_0310 Neuroblastoma SJNB8 68 12 1812 145 3 285 1734 KLC4,PTK7,CUL9,CUL7,SRF,MRPL2
SE_02_110600349 chr6:43078918-43147547 Sample_02_1106 Brain NGP 349 26 1792 144 2 204 1546 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2
SE_02_074700393 chr6:43089461-43148066 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 393 19 1536 126 1 184 1546 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2
SE_02_116000106 chr6:43089692-43144744 Sample_02_1160 Embryo H1_shLuc 106 15 1429 118 1 183 1323 PTK7,KLC4,SRF,CUL9,CUL7,MRPL2,TTBK1
SE_02_104601431 chr6:43106906-43161094 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 1431 16 1438 116 0 159 1884 PTK7,KLC4,SRF,CUL9,MRPL2
SE_02_130000336 chr6:43110761-43157129 Sample_02_1300 Blood KARPAS-45 336 15 1224 98 0 129 1546 PTK7,SRF,CUL9
SE_02_092101083 chr6:43111002-43144089 Sample_02_0921 Heart embryonic heart_CS22 1083 17 876 72 0 119 1230 PTK7,SRF,CUL9
SE_02_012800562 chr6:43112669-43145748 Sample_02_0128 Haematopoietic and lymphoid tissue ALL-SIL 562 13 897 74 0 129 1463 PTK7,CUL9,SRF
SE_02_024300325 chr6:43112975-43144249 Sample_02_0243 Foreskin foreskin_HFFs 325 3 840 70 0 119 1230 PTK7,CUL9,SRF
SE_02_024400136 chr6:43113049-43143761 Sample_02_0244 Foreskin foreskin_D11 136 5 829 68 0 119 1213 PTK7,CUL9,SRF
SE_02_114500842 chr6:43113966-43147192 Sample_02_1145 Peripheral nerve SNF02.2_PRC2 WT 842 15 899 73 0 122 1546 PTK7,SRF,CUL9
SE_02_021600953 chr6:43120886-43145572 Sample_02_0216 Skin NHEK_scramble 953 4 683 56 0 107 1454 PTK7,CUL9,SRF
SE_00_004500579 chr6:43140810-43144371 Sample_00_0045 Thymus thymus 579 1 96 8 0 23 370 PTK7,CUL9,SRF
SE_02_077500962 chr6:43158027-43177594 Sample_02_0775 Pancreas EndoC-BH1_SE 962 7 452 66 0 185 1284 SRF,PTK7,CUL9
SE_02_143200733 chr6:43161925-43179833 Sample_02_1432 Bone A673 STAG2 WT 733 3 405 60 0 230 1150 SRF,DNPH1,CUL9
SE_01_007800899 chr6:43169342-43180386 Sample_01_0078 Heart left ventricle heart-left-ventricle 899 2 236 16 0 252 1286 SRF,CUL9,C6ORF108
SE_02_070300548 chr6:43169468-43175753 Sample_02_0703 Pancreas PATU8988S WT 548 1 118 6 0 151 608 SRF,CUL9
SE_02_059400766 chr6:43169503-43180459 Sample_02_0594 iPSC-derived neural progenitors 766 2 237 16 0 253 1306 SRF,DNPH1,CUL9
SE_02_097200437 chr6:43169508-43176704 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 437 1 141 8 0 172 752 SRF,CUL9
SE_02_032900079 chr6:43169535-43175243 Sample_02_0329 Embryo H9_primed 79 1 109 4 0 149 579 SRF,CUL9
SE_02_127300882 chr6:43169575-43176704 Sample_02_1273 Cervix HeLa 882 2 141 8 0 172 752 SRF,CUL9
SE_00_004300797 chr6:43169606-43176236 Sample_00_0043 Stomach stomach_96d 797 1 126 6 0 163 684 SRF,CUL9
SE_01_002300237 chr6:43169649-43175822 Sample_01_0023 Embryo cardiac-muscle-cell 237 1 113 6 0 152 620 SRF,CUL9
SE_02_125500077 chr6:43169680-43175405 Sample_02_1255 Bladder Bladder tumor Luminal2 77 1 105 4 0 149 579 SRF,CUL9
SE_01_007700659 chr6:43169740-43177135 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 659 1 147 9 0 172 791 SRF,CUL9
SE_00_001400636 chr6:43169743-43176298 Sample_00_0014 Heart left ventricle heart-left-ventricle 636 1 124 6 0 163 684 SRF,CUL9
SE_02_024200614 chr6:43169743-43176529 Sample_02_0242 Colon V481 614 1 131 8 0 163 722 SRF,CUL9
SE_02_095800367 chr6:43169812-43175409 Sample_02_0958 Brain H3.3K27M_Tumor_BT245-X0-2-Rx_xenograft 367 1 101 2 0 149 579 SRF,CUL9
SE_01_009200840 chr6:43169816-43176890 Sample_01_0092 Vagina vagina 840 1 141 7 0 172 791 SRF,CUL9
SE_01_010900793 chr6:43169821-43175635 Sample_01_0109 Colon transverse colon_54y 793 1 109 4 0 149 594 SRF,CUL9
SE_00_002100789 chr6:43169822-43175694 Sample_00_0021 Lung lung_3y 789 1 109 4 0 149 601 SRF,CUL9
SE_02_141700305 chr6:43169845-43175211 Sample_02_1417 Brain SF7761 305 1 101 2 0 149 579 SRF,CUL9
SE_02_071800283 chr6:43169856-43175688 Sample_02_0718 Pancreas PATU8988S_GFP_DOX 283 1 109 4 0 149 601 SRF,CUL9
SE_00_002500609 chr6:43169869-43176344 Sample_00_0025 Muscle of leg muscle-of-leg 609 1 124 6 0 163 684 SRF,CUL9
SE_02_002100817 chr6:43169888-43176127 Sample_02_0021 Colon V429 817 1 118 4 0 163 677 SRF,CUL9
SE_02_126300644 chr6:43169888-43176868 Sample_02_1263 Bone Im-GCT-4072_G34W unedited 644 2 140 6 0 172 791 SRF,CUL9
SE_02_098100171 chr6:43169897-43176706 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 171 3 133 6 0 172 752 SRF,CUL9
SE_02_095900068 chr6:43169904-43175374 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 68 2 100 2 0 149 579 SRF,CUL9
SE_02_097300181 chr6:43169925-43176208 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 181 2 119 4 0 163 684 SRF,CUL9
SE_02_126401082 chr6:43169933-43176344 Sample_02_1264 Bone Im-GCT-4072_G34W KO 1082 2 123 6 0 163 684 SRF,CUL9
SE_00_003400980 chr6:43169941-43175889 Sample_00_0034 Right cardiac atrium right-cardiac-atrium 980 1 110 4 0 159 635 SRF,CUL9
SE_00_001500546 chr6:43169942-43176883 Sample_00_0015 Lung IMR-90 546 1 140 7 0 172 791 SRF,CUL9
SE_02_120200347 chr6:43169945-43176324 Sample_02_1202 Brain GBM38 347 2 123 6 0 163 684 SRF,CUL9
SE_02_146001182 chr6:43169949-43176479 Sample_02_1460 Blood Mutz-3 1182 1 125 6 0 163 708 SRF,CUL9
SE_00_003601369 chr6:43169953-43175895 Sample_00_0036 Small intestine small-intestine_108days 1369 1 110 4 0 159 635 SRF,CUL9
SE_02_027400845 chr6:43169958-43175474 Sample_02_0274 Endometriosis hTERT_KD 845 1 102 3 0 149 579 SRF,CUL9
SE_02_081800678 chr6:43169958-43180536 Sample_02_0818 Ovary High-grade serous ovarian cancer 678 2 230 14 0 254 1317 SRF,DNPH1,CUL9
SE_02_119500633 chr6:43169965-43176756 Sample_02_1195 Brain GBM29 633 2 134 6 0 172 768 SRF,CUL9
SE_02_117700596 chr6:43169975-43176768 Sample_02_1177 Brain GBM05 596 2 134 6 0 172 774 SRF,CUL9
SE_02_097100653 chr6:43170001-43175501 Sample_02_0971 Brain H3.3K27M_XPS124018_xenograft 653 1 104 3 0 149 579 SRF,CUL9
SE_02_142500445 chr6:43170003-43176542 Sample_02_1425 Shoulder fibroblast_384 445 2 128 6 0 163 722 SRF,CUL9
SE_02_090401487 chr6:43170008-43176388 Sample_02_0904 Heart left ventricle_DCM_LV1028 1487 2 124 6 0 163 685 SRF,CUL9
SE_02_118400326 chr6:43170019-43176229 Sample_02_1184 Brain GBM13 326 2 118 4 0 163 684 SRF,CUL9
SE_02_099200232 chr6:43170020-43175780 Sample_02_0992 Mammary gland MDA-MB-231_Par 232 2 107 4 0 152 614 SRF,CUL9
SE_02_086900725 chr6:43170022-43176909 Sample_02_0869 Fibroblast VH10_NO_UV 725 5 140 7 0 172 791 SRF,CUL9
SE_02_061500880 chr6:43170029-43180455 Sample_02_0615 Liposarcoma liposarcoma cells_MLS402 880 3 227 14 0 253 1306 SRF,DNPH1,CUL9
SE_02_003801492 chr6:43170038-43175364 Sample_02_0038 Embryo DE 1492 1 99 2 0 149 579 SRF,CUL9
SE_02_119200717 chr6:43170050-43176169 Sample_02_1192 Brain GBM26 717 3 117 4 0 163 684 SRF,CUL9
SE_02_024000457 chr6:43170051-43175933 Sample_02_0240 Colon V429_2 457 1 109 4 0 159 642 SRF,CUL9
SE_02_034700470 chr6:43170051-43180702 Sample_02_0347 Blood AML11 470 3 233 15 0 261 1354 SRF,CUL9,C6ORF108
SE_02_126700321 chr6:43170054-43176090 Sample_02_1267 Bone Im-GCT-4072_G34W 321 1 114 4 0 163 674 SRF,CUL9
SE_02_142600507 chr6:43170060-43176638 Sample_02_1426 Shoulder fibroblast_341 507 1 130 6 0 170 740 SRF,CUL9
SE_02_093100387 chr6:43170064-43175286 Sample_02_0931 Embryo H9 UTXKO 387 2 99 2 0 149 579 SRF,CUL9
SE_02_098200155 chr6:43170065-43175330 Sample_02_0982 Brain H3.3K27M-KO_BT245-C2P3 155 1 99 2 0 149 579 SRF,CUL9
SE_02_119700599 chr6:43170072-43179626 Sample_02_1197 Brain GBM33 599 3 212 11 0 227 1088 SRF,DNPH1,CUL9
SE_02_098400108 chr6:43170076-43176349 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 108 2 122 6 0 163 684 SRF,CUL9
SE_02_024100734 chr6:43170082-43176039 Sample_02_0241 Colon V456 734 1 111 4 0 163 664 SRF,CUL9
SE_02_119300891 chr6:43170084-43175399 Sample_02_1193 Brain GBM27 891 2 99 2 0 149 579 SRF,CUL9
SE_02_097600177 chr6:43170094-43176425 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 177 2 123 6 0 163 696 SRF,CUL9
SE_02_119100685 chr6:43170103-43176406 Sample_02_1191 Brain GBM25 685 1 123 6 0 163 692 SRF,CUL9
SE_02_142700817 chr6:43170109-43176881 Sample_02_1427 Shoulder fibroblast_343 817 1 139 7 0 172 791 SRF,CUL9
SE_02_081901083 chr6:43170116-43175750 Sample_02_0819 Ovary Mucinous ovarian cancer 1083 2 107 4 0 151 608 SRF,CUL9
SE_01_010101047 chr6:43170125-43175423 Sample_01_0101 Pancreas pancreas_54y 1047 1 99 2 0 149 579 SRF,CUL9
SE_02_093700876 chr6:43170142-43175963 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 876 1 109 4 0 161 646 SRF,CUL9
SE_02_136500634 chr6:43170144-43176478 Sample_02_1365 Pancreas AsPC1-untreated 634 1 124 6 0 163 708 SRF,CUL9
SE_02_141001196 chr6:43170147-43175475 Sample_02_1410 Brain GSC6 1196 1 101 3 0 149 579 SRF,CUL9
SE_02_063500204 chr6:43170150-43175077 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 204 3 95 2 0 149 579 SRF,CUL9
SE_02_158000454 chr6:43170152-43176637 Sample_02_1580 Renal 786-O 454 2 130 6 0 170 739 SRF,CUL9
SE_02_130800597 chr6:43170160-43175437 Sample_02_1308 Artery Pulmonary artery endothelial cells_caMEK5 597 1 100 3 0 149 579 SRF,CUL9
SE_02_081601001 chr6:43170180-43176529 Sample_02_0816 Ovary Clear cell ovarian cancer 1001 2 127 6 0 163 722 SRF,CUL9
SE_02_145500690 chr6:43170216-43176308 Sample_02_1455 Arter pulmonary arterial smooth muscle cells_PAH2_sialdh1a3 690 3 121 4 0 163 684 SRF,CUL9
SE_02_144800388 chr6:43170236-43175197 Sample_02_1448 Adipose SW872_YAP5SA 388 1 98 2 0 149 579 SRF,CUL9
SE_02_126900784 chr6:43170300-43175351 Sample_02_1269 Bone Im-GCT-4072_G34W-repair_WT_A4 784 1 97 2 0 149 579 SRF,CUL9
SE_02_066500089 chr6:43170302-43175276 Sample_02_0665 Prostate RWPE1 Schlap1 rep1 89 2 97 2 0 149 579 SRF,CUL9
SE_02_068500815 chr6:43170319-43175359 Sample_02_0685 Lung NCI-H1048_no infection 815 3 96 2 0 149 579 SRF,CUL9
SE_02_135400590 chr6:43170354-43175417 Sample_02_1354 Mammary gland MDA-MB-231-Erbeta_E2_TNFa 590 2 96 2 0 149 579 SRF,CUL9
SE_02_138800960 chr6:43171221-43177094 Sample_02_1388 Peripheral blood JB6_ALK+ 960 2 121 5 0 153 736 SRF,CUL9
SE_02_121000612 chr6:43171241-43174888 Sample_02_1210 Brain GBM17 612 1 68 0 0 129 521 SRF,CUL9
SE_02_046601032 chr6:43171253-43180532 Sample_02_0466 Adipose visceral adipocytes 1032 3 206 12 0 234 1258 SRF,DNPH1,CUL9
SE_02_111400169 chr6:43171259-43174687 Sample_02_1114 Embryonic kidney HEK293 169 1 64 0 0 118 518 SRF,CUL9
SE_00_005201028 chr6:43171266-43175383 Sample_00_0052 Heart left ventricle 3y 1028 2 74 0 0 125 518 SRF,CUL9
SE_02_117401068 chr6:43171266-43176291 Sample_02_1174 Brain GBM02 1068 2 95 2 0 139 623 SRF,CUL9
SE_02_083901060 chr6:43171270-43175681 Sample_02_0839 Embryo hNPCs_K755R/+ 1060 1 82 2 0 125 538 SRF,CUL9
SE_02_119801061 chr6:43171273-43175353 Sample_02_1198 Brain GBM34 1061 1 74 0 0 125 513 SRF,CUL9
SE_02_074400527 chr6:43173763-43175366 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 527 1 33 0 0 55 103 SRF,CUL9
Genomic distribution of SEs associated with CUL9
Genome Browser

The strength of the tissue affected by the gene

Expression of CUL9

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)