SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000169583
Gene: CLIC3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr9:136994608-136996568 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_077900229 chr9:136887865-136952004 Sample_02_0779 Lymphoma U2932 229 25 2532 211 29 122 3333 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,EDF1,MAMDC4,MIR4479,PHPT1,LCN12,CLIC3,C9ORF172,PTGDS
SE_02_092301141 chr9:136920036-136951268 Sample_02_0923 Heart fetal heart_PCW10_12522 1141 10 1377 111 23 102 2701 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_092500488 chr9:136920161-136951397 Sample_02_0925 Heart fetal heart_PCW17_12570 488 15 1376 111 23 102 2696 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_090300940 chr9:136920590-136951541 Sample_02_0903 Heart left ventricle_DCM_LV1009 940 11 1362 111 22 97 2635 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_053300908 chr9:136920726-136951403 Sample_02_0533 Blood vessel Circle of Willis_54y 908 9 1352 109 22 97 2585 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_090400995 chr9:136920806-136951391 Sample_02_0904 Heart left ventricle_DCM_LV1028 995 7 1350 109 22 97 2583 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_089801161 chr9:136921080-136951753 Sample_02_0898 Heart left ventricle_LV1356 1161 11 1350 110 24 94 2564 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_00_005200600 chr9:136921134-136951202 Sample_00_0052 Heart left ventricle 3y 600 11 1329 105 19 91 2486 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_091301379 chr9:136921143-136951510 Sample_02_0913 Heart left ventricle_DCM_LV1304 1379 10 1340 108 22 91 2533 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_090101001 chr9:136921164-136951335 Sample_02_0901 Heart left ventricle_LV1471 1001 12 1333 108 22 91 2503 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_088800959 chr9:136921189-136951360 Sample_02_0888 Heart left ventricle_LV1160 959 15 1333 108 22 91 2503 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_089000844 chr9:136921236-136951449 Sample_02_0890 Heart left ventricle_LV1200 844 10 1333 108 22 88 2505 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_074600869 chr9:136921266-136951109 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 869 11 1319 105 19 88 2433 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_090701382 chr9:136921278-136951314 Sample_02_0907 Heart left ventricle_DCM_LV1223 1382 11 1327 108 22 88 2472 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_089100762 chr9:136921287-136952181 Sample_02_0891 Heart left ventricle_LV1202 762 7 1346 111 25 88 2526 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_00_005700169 chr9:136921339-136951219 Sample_00_0057 Heart right ventricle 3y 169 19 1319 105 19 88 2438 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS,ENTPD2,EDF1,NPDC1,MAMDC4,C9orf141
SE_02_036700234 chr9:136921351-136951547 Sample_02_0367 Skeletal muscle NS129 234 6 1330 108 22 88 2492 C8G,FBXW5,TRAF2,CLIC3,PTGDS,C9ORF142,LCNL1,LCN12
SE_02_096700769 chr9:136922242-136951009 Sample_02_0967 Brain H3.3K27M_JN57 769 5 1282 101 19 88 2387 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_036800300 chr9:136924891-136951523 Sample_02_0368 Skeletal muscle NS134 300 4 1179 96 21 88 2371 C8G,FBXW5,TRAF2,CLIC3,PTGDS,C9ORF142,LCNL1,LCN12
SE_01_009700530 chr9:136925087-136951093 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 530 5 1134 92 18 88 2290 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_133300106 chr9:136925922-136951070 Sample_02_1333 Lung NCI-H1299_wtSMARCA4 106 4 1098 90 18 87 2190 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_02_050400385 chr9:136930321-136951103 Sample_02_0504 Esophagus KYSE510_1 385 6 932 75 17 86 2010 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_01_008200520 chr9:136933475-136951422 Sample_01_0082 Right lobe of liver right-lobe-of-liver 520 3 841 61 20 86 2073 C8G,FBXW5,CLIC3,PTGDS,TRAF2,C9ORF142,LCNL1,LCN12
SE_02_055500777 chr9:136933617-136951177 Sample_02_0555 Other HAP1_WT 777 4 826 58 17 86 2029 FBXW5,C8G,TRAF2,LCNL1,C9ORF142,MIR4479,LCN12,CLIC3,PTGDS
SE_00_001400076 chr9:136936560-136951506 Sample_00_0014 Heart left ventricle heart-left-ventricle 76 1 734 50 18 86 2086 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_032501236 chr9:136936910-136950972 Sample_02_0325 Liver hepatocytes_d1 1236 2 708 46 15 86 2009 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_032601107 chr9:136937140-136951335 Sample_02_0326 Liver hepatocytes_d3 1107 2 712 50 18 86 2040 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_064000675 chr9:136937901-136951222 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 675 6 691 44 14 86 1890 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_029300242 chr9:136939247-136951294 Sample_02_0293 Pancreatic L3-6_4SC-202 242 3 631 43 14 86 1846 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_039601434 chr9:136939265-136948578 Sample_02_0396 Skin NHEK-D 1434 1 554 31 7 86 1642 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_058400493 chr9:136939305-136951079 Sample_02_0584 Lung H1299 WT 493 4 619 39 11 86 1801 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_100500248 chr9:136939907-136950539 Sample_02_1005 Brain Lateral temporal lobe_11T_Old 248 4 578 36 10 86 1801 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_076500386 chr9:136940101-136952660 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 386 1 615 44 18 86 2030 FBXW5,C8G,LCN12,LCNL1,C9ORF142,CLIC3,PTGDS
SE_02_085200348 chr9:136940480-136952099 Sample_02_0852 Mammary gland MCF7L-P 348 1 589 42 17 83 1869 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_115900347 chr9:136940480-136952099 Sample_02_1159 Mammary gland MCF7 347 1 589 42 17 83 1869 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_103000347 chr9:136940712-136952788 Sample_02_1030 Colon DKO 347 1 587 44 18 84 1942 FBXW5,C8G,LCN12,LCNL1,C9ORF142,CLIC3,PTGDS
SE_02_035800466 chr9:136941743-136952684 Sample_02_0358 Colon LS180 466 1 507 43 18 57 1705 C8G,LCN12,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142
SE_02_102900604 chr9:136941978-136954480 Sample_02_1029 Colon HCT116 604 1 567 48 23 67 2073 FBXW5,C8G,LCN12,LCNL1,C9ORF142,CLIC3,PTGDS
SE_02_032300353 chr9:136942383-136951736 Sample_02_0323 Colon RKO 353 2 454 39 15 50 1420 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_001500598 chr9:136942614-136951349 Sample_02_0015 Liver HepG2_shNS 598 3 423 37 13 43 1319 C8G,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142,LCN12
SE_02_051700433 chr9:136942936-136952940 Sample_02_0517 Esophagus TE5 433 1 431 43 17 39 1499 FBXW5,C8G,LCN12,LCNL1,C9ORF142,CLIC3,PTGDS
SE_02_050600439 chr9:136942937-136952918 Sample_02_0506 Esophagus TE5_1 439 1 427 43 17 37 1493 FBXW5,C8G,LCN12,LCNL1,C9ORF142,CLIC3,PTGDS
SE_02_011400495 chr9:136943032-136952945 Sample_02_0114 Mammary gland CAL51 495 1 424 43 17 39 1479 C8G,LCN12,FBXW5,CLIC3,PTGDS,LCNL1,C9ORF142
SE_02_085701226 chr9:136943285-136951438 Sample_02_0857 Glioblastoma Glioblastoma neurosphere cell_HF-3035 1226 2 366 37 13 36 1181 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_088400765 chr9:136943285-136951825 Sample_02_0884 Colon LoVo 765 1 376 39 15 36 1211 FBXW5,C8G,LCNL1,C9ORF142,LCN12,CLIC3,PTGDS
SE_02_051600709 chr9:136944849-136951413 Sample_02_0516 Esophagus KYSE70 709 1 273 33 9 15 766 C8G,LCNL1,C9ORF142,FBXW5,LCN12,CLIC3,PTGDS
SE_02_050500714 chr9:136944849-136951444 Sample_02_0505 Esophagus KYSE70_1 714 1 275 33 9 15 772 C8G,LCNL1,C9ORF142,FBXW5,LCN12,CLIC3,PTGDS
SE_02_027500556 chr9:136945632-136971130 Sample_02_0275 Retina FW14 556 5 852 102 73 31 1500 C8G,LCN12,CLIC3,PTGDS,LCNL1,C9ORF142,FBXW5
SE_02_096600291 chr9:136946461-136975903 Sample_02_0966 Brain H3.3K27M_JN29-BS3 291 15 1001 112 81 25 1470 C8G,LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,PTGDS
SE_02_108200713 chr9:136946862-136975635 Sample_02_1082 Retina retina 713 6 967 109 81 23 1363 C8G,LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,PTGDS
SE_02_045400535 chr9:136946941-136978463 Sample_02_0454 Th17 lymphocytes Th17-IL-10+ Day 0 535 9 1042 114 83 28 1777 C8G,LCN12,PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,CLIC3
SE_02_101100167 chr9:136947031-136963559 Sample_02_1011 Brain Lateral temporal lobe_5T_AD 167 5 530 60 39 15 1156 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_077500721 chr9:136947091-136973605 Sample_02_0775 Pancreas EndoC-BH1_SE 721 10 872 100 79 23 1136 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_138400418 chr9:136947124-136980108 Sample_02_1384 Other induced pluripotent stem cell derived Neuronal progenitor cell 418 7 1074 117 84 45 2020 LCN12,PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,CLIC3,C8G
SE_02_102700446 chr9:136947328-136964940 Sample_02_1027 Esophagus KYSE180_1 446 4 553 60 43 15 1122 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_024000514 chr9:136947355-136982683 Sample_02_0240 Colon V429_2 514 7 1142 127 84 53 2334 LCN12,PTGDS,CLIC3,C8G,LCNL1,C9ORF142,ABCA2,C9ORF139,FBXW5
SE_02_047801055 chr9:136947393-136965134 Sample_02_0478 Colon normal colon mucosa 1055 5 556 60 43 15 1122 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_081000186 chr9:136947601-136952978 Sample_02_0810 Mammary gland T47D noSerum 186 3 156 21 11 3 462 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_104300806 chr9:136947676-136981082 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 806 22 1075 116 84 53 2202 LCN12,PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,CLIC3,C8G
SE_02_154100818 chr9:136947709-136975718 Sample_02_1541 Nasopharyngeal HNE1 818 6 927 107 81 23 1306 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_133400250 chr9:136947864-136979556 Sample_02_1334 Lung NCI-H1299_mutSMARCA4 250 8 1020 114 84 40 1931 LCN12,PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,CLIC3,C8G
SE_02_146400447 chr9:136947999-136972518 Sample_02_1464 Ovary CAOV4 447 5 779 92 76 18 1122 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_081700741 chr9:136948007-136975339 Sample_02_0817 Ovary Epithelial ovarian cancer 741 4 902 102 81 23 1225 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_152500396 chr9:136948101-136977078 Sample_02_1525 Stomach N87 DMSO 396 7 953 107 83 23 1502 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_103602074 chr9:136948356-136951022 Sample_02_1036 Mammary gland HCC70_XY018 2074 1 77 9 4 0 159 LCNL1,C9ORF142,FBXW5,LCN12,CLIC3,C8G,PTGDS
SE_02_067201253 chr9:136948581-136953334 Sample_02_0672 Endometrium endometrium cancer_DSG 1253 1 135 21 14 6 540 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_074700914 chr9:136948670-136954019 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 914 1 161 23 16 9 688 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_034900615 chr9:136949017-136971329 Sample_02_0349 Peripheral blood CUTLL1_dimer-mutant 615 3 702 87 73 18 1122 LCN12,CLIC3,C8G,PTGDS,LCNL1,C9ORF142,FBXW5
SE_02_067400956 chr9:136949037-136953015 Sample_02_0674 Endometrium E1_FA 956 1 109 17 11 3 466 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_052200282 chr9:136949109-136976467 Sample_02_0522 Colon SW620 282 8 904 105 83 23 1335 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_107100197 chr9:136949172-136970885 Sample_02_1071 Blood Jurkat_WT 197 7 682 86 72 18 1122 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_068100519 chr9:136949384-136959301 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 519 2 301 31 26 11 1109 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_104800872 chr9:136949684-136974957 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 872 8 844 96 79 23 1031 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_101200081 chr9:136949857-136962009 Sample_02_1012 Brain Lateral temporal lobe_8T_AD 81 2 370 38 30 15 963 LCN12,LCNL1,C9ORF142,FBXW5,CLIC3,C8G,PTGDS
SE_02_087000086 chr9:136959385-136973705 Sample_02_0870 Colon HCT116_GLIS2.1-DMSO 86 5 494 64 53 12 0 LCNL1,C9ORF142,FBXW5,LCN12,CLIC3,C8G,PTGDS
SE_02_021601081 chr9:136961701-136979954 Sample_02_0216 Skin NHEK_scramble 1081 4 619 73 54 27 861 PTGDS,CLIC3,C8G,LCNL1,C9ORF142,ABCA2,C9ORF139,FBXW5,LCN12
SE_02_114300145 chr9:136969345-136985759 Sample_02_1143 Peripheral nerve MPNST724_PRC2 WT 145 6 550 55 27 39 1906 PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,FUT7,LCN12,CLIC3,C8G
SE_02_117300400 chr9:136973923-136986323 Sample_02_1173 Brain GBM01 400 1 388 32 8 31 1978 PTGDS,LCNL1,ABCA2,C9ORF142,FBXW5,C9ORF139,FUT7,LCN12,CLIC3,C8G
SE_02_117300119 chr9:137019718-137028205 Sample_02_1173 Brain GBM01 119 1 264 19 2 72 1455 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_093500243 chr9:137021692-137029481 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 243 1 213 15 0 74 1165 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_119800508 chr9:137021840-137027949 Sample_02_1198 Brain GBM34 508 2 181 12 0 49 823 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_093700526 chr9:137021860-137029417 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 526 2 205 15 0 74 1117 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_119600507 chr9:137022199-137028268 Sample_02_1196 Brain GBM32 507 1 167 10 0 65 806 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_120400571 chr9:137022206-137027935 Sample_02_1204 Brain NB2 571 1 166 10 0 49 708 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_121300393 chr9:137022213-137028284 Sample_02_1213 Brain GBM31 393 1 168 10 0 65 803 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_120300392 chr9:137022250-137027966 Sample_02_1203 Brain NB1 392 1 166 10 0 49 707 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_120500895 chr9:137022351-137028281 Sample_02_1205 Brain NB3 895 1 166 10 0 65 767 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_121100380 chr9:137022364-137028212 Sample_02_1211 Brain GBM21 380 1 164 10 0 58 738 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_080900475 chr9:137022371-137029517 Sample_02_0809 Mammary gland T47D Serum 475 1 192 14 0 74 972 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_108600573 chr9:137022383-137029462 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 573 1 187 11 0 74 969 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_109200621 chr9:137022397-137029700 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 621 1 196 12 0 76 968 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_081000275 chr9:137022448-137028232 Sample_02_0810 Mammary gland T47D noSerum 275 1 158 7 0 60 737 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_100100163 chr9:137022556-137025079 Sample_02_1001 Brain Lateral temporal lobe_17T_Young 163 4 76 4 0 23 451 ABCA2,LCNL1,C9ORF142,SAPCD2,ENTPD2,C9ORF139,FUT7,NPDC1,CLIC3,PTGDS
SE_02_096900776 chr9:137023254-137030346 Sample_02_0969 Brain H3.3K27M_PL637 776 1 194 16 2 60 872 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_096200907 chr9:137024158-137029543 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 907 1 137 8 0 52 560 ABCA2,C9ORF139,LCNL1,C9ORF142,SAPCD2,ENTPD2,FUT7,UAP1L1,NPDC1,CLIC3,PTGDS
SE_01_008401313 chr9:137024885-137036041 Sample_01_0084 Spleen spleen 1313 1 362 26 4 96 1757 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_035000511 chr9:137025661-137030715 Sample_02_0350 Dorsolateral prefrontal cortex dorsolateral-prefrontal-cortex 511 2 129 14 2 52 693 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_111900251 chr9:137025959-137036572 Sample_02_1119 Blood KBM7 251 1 344 26 4 92 1894 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_083500326 chr9:137026617-137035881 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 326 1 307 25 4 91 1717 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_022200541 chr9:137026620-137036380 Sample_02_0222 Blood DU-528 541 1 320 25 4 91 1841 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_083400403 chr9:137026628-137036382 Sample_02_0834 Bone marrow TEX-HIST1H3F-WT-Rx_cells 403 1 319 24 4 91 1842 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_025600515 chr9:137026630-137036380 Sample_02_0256 Peripheral blood MV411 515 1 319 24 4 91 1841 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_017600602 chr9:137026881-137036292 Sample_02_0176 Peripheral blood LOUCY 602 1 314 24 4 91 1817 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_058100245 chr9:137026964-137034279 Sample_02_0581 Blood MOLM13_empty_HG 245 1 247 20 3 75 1348 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_083600421 chr9:137027013-137036058 Sample_02_0836 Bone marrow TEX-HIST1H3H-WT-Rx_cells 421 1 303 24 4 81 1760 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_057700291 chr9:137027021-137034293 Sample_02_0577 Blood MOLM13_empty 291 1 246 20 3 75 1348 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_057800654 chr9:137027083-137034293 Sample_02_0578 Blood MOLM-13_sgSIK3e4 654 1 239 20 3 75 1348 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_014400445 chr9:137027108-137036223 Sample_02_0144 Peripheral blood MV411_DMSO 445 1 303 24 4 81 1801 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,PTGDS,LCNL1,C9ORF142,ENTPD2,C9ORF140,NPDC1
SE_02_058200403 chr9:137027148-137034314 Sample_02_0582 Blood MOLM13_SIK3TQ_HG 403 1 237 20 3 74 1348 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_083300351 chr9:137027163-137036176 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 351 1 295 24 4 80 1790 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_083700400 chr9:137027198-137036329 Sample_02_0837 Bone marrow TEX-Luciferase-Rx_cells 400 1 303 24 4 80 1822 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_134200058 chr9:137027289-137035477 Sample_02_1342 Blood NB4 58 1 278 23 4 80 1589 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3,PTGDS
SE_02_099300442 chr9:137027591-137035616 Sample_02_0993 Blood MOLM-13_empty 442 3 280 23 4 76 1559 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_084100648 chr9:137028327-137035946 Sample_02_0841 Blood THP-1_untr 648 1 275 23 4 52 1433 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_034300213 chr9:137028363-137036669 Sample_02_0343 Bone marrow HSPC_A0 213 1 297 24 4 51 1600 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,LCNL1,C9ORF142,C9ORF140,ENTPD2,NPDC1
SE_02_138801090 chr9:137028369-137035826 Sample_02_1388 Peripheral blood JB6_ALK+ 1090 2 269 23 4 51 1387 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_034200782 chr9:137028375-137035616 Sample_02_0342 Liver HSPCs_F0 782 1 268 23 4 51 1329 ABCA2,C9ORF139,FUT7,UAP1L1,CLIC3,LCNL1,C9ORF142,C9ORF140,ENTPD2,NPDC1
SE_02_117300916 chr9:137028381-137033321 Sample_02_1173 Brain GBM01 916 1 187 19 3 41 1015 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_046100448 chr9:137028381-137035777 Sample_02_0461 Blood MV-4-11-B cells 448 3 268 23 4 51 1366 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_099500524 chr9:137028387-137035302 Sample_02_0995 Blood MOLM-13_empty vector 524 2 253 22 4 51 1241 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_099400536 chr9:137028392-137035644 Sample_02_0994 Blood MOLM13_SIK3TQ 536 3 268 23 4 51 1321 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_00_005501101 chr9:137028396-137035537 Sample_00_0055 Spleen spleen 34y 1101 1 264 23 4 51 1294 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_050100183 chr9:137028403-137036539 Sample_02_0501 Blood HL-60_CTRL 183 3 292 24 4 51 1559 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_104901468 chr9:137028419-137034242 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1468 1 215 19 3 42 1015 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_109800675 chr9:137028436-137035350 Sample_02_1098 Blood THP1_DMSO_noPMA 675 2 256 22 4 51 1240 ABCA2,C9ORF139,FUT7,LCNL1,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_054800319 chr9:137029603-137035304 Sample_02_0548 Blood THP-1_24h with EtOH 319 2 223 18 4 46 1073 C9ORF139,FUT7,LCNL1,ABCA2,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_158500471 chr9:137030708-137035364 Sample_02_1585 Blood SupB15 DMSO 471 2 192 11 2 44 882 C9ORF139,FUT7,LCNL1,ABCA2,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_046300291 chr9:137030751-137035611 Sample_02_0463 Blood OCI-AML3 cells 291 3 203 12 2 44 930 C9ORF139,FUT7,LCNL1,ABCA2,C9ORF142,SAPCD2,ENTPD2,UAP1L1,NPDC1,CLIC3
SE_02_139400513 chr9:137030751-137041986 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 513 3 438 29 6 66 1868 NPDC1,C9ORF139,FUT7,LCNL1,ABCA2,C9ORF142,SAPCD2,ENTPD2,MAN1B1-AS1,UAP1L1,CLIC3,MAN1B1
SE_02_076500478 chr9:137040421-137050062 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 478 1 327 23 3 50 1417 NPDC1,ENTPD2,ABCA2,C9ORF142,SAPCD2,MAN1B1-AS1,C9ORF139,FUT7,UAP1L1,CLIC3,MAN1B1
SE_02_067401200 chr9:137042722-137046700 Sample_02_0674 Endometrium E1_FA 1200 1 124 8 1 31 591 NPDC1,ABCA2,MAN1B1-AS1,SAPCD2,ENTPD2,C9ORF139,FUT7,UAP1L1,CLIC3,MAN1B1
SE_02_108600808 chr9:137043367-137047237 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 808 1 118 9 1 26 430 NPDC1,ABCA2,MAN1B1-AS1,SAPCD2,ENTPD2,C9ORF139,FUT7,UAP1L1,CLIC3,MAN1B1
SE_02_096000528 chr9:137043561-137056196 Sample_02_0960 Brain H3.3K27M_Tumor-derived cell-line_BT869p21-Rx_cells 528 2 417 39 8 85 1677 NPDC1,ENTPD2,ABCA2,MAN1B1-AS1,SAPCD2,C9ORF139,FUT7,UAP1L1,CLIC3,MAN1B1
SE_02_078500088 chr9:137044064-137064124 Sample_02_0785 Brain 2097 88 7 652 54 9 86 2049 NPDC1,ENTPD2,SAPCD2,ABCA2,MAN1B1-AS1,C9ORF139,FUT7,UAP1L1,CLIC3,MAN1B1
Genomic distribution of SEs associated with CLIC3
Genome Browser

The strength of the tissue affected by the gene

Expression of CLIC3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)