SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000008300
Gene: CELSR3 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:48636463-48662886 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_078000156 chr3:48587609-48615627 Sample_02_0780 Liver SMMC-7721 156 8 741 31 1 211 2666 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_154100243 chr3:48590173-48616515 Sample_02_1541 Nasopharyngeal HNE1 243 8 675 33 1 182 2103 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_006300480 chr3:48591073-48614965 Sample_02_0063 Skin Keratinocytes 480 3 611 23 1 174 1929 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_047900529 chr3:48592227-48615079 Sample_02_0479 Head and neck SCC25 529 9 580 22 1 164 1714 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_072700212 chr3:48593110-48619051 Sample_02_0727 Fetal lung IMR90_Etoposide 212 7 661 34 1 141 1515 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89,NCKIPSD
SE_02_026200555 chr3:48593291-48620870 Sample_02_0262 Osteoblastic hFOB_JQ1_differentiated 555 3 702 34 1 139 1536 UQCRC1,COL7A1,TMEM89,UCN2,PFKFB4,CELSR3,MIR711,SLC26A6
SE_02_005400661 chr3:48593668-48615032 Sample_02_0054 Lung IMR-90_DMSO_1 661 2 540 22 1 128 1402 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_059600314 chr3:48593680-48619271 Sample_02_0596 Mammary gland MCF10A_ DMSO 314 4 646 34 1 128 1400 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_005500274 chr3:48593715-48619373 Sample_02_0055 Lung IMR-90_Nutlin-3a 274 3 648 34 1 128 1388 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_113200621 chr3:48593719-48617038 Sample_02_1132 Pancreas KLM1 wt 621 10 598 32 1 128 1388 COL7A1,UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,MIR4793,PFKFB4,TMEM89
SE_02_029400888 chr3:48594027-48614915 Sample_02_0294 Pancreatic L3-6_DMSO 888 3 532 22 1 128 1352 UQCRC1,COL7A1,UCN2,PFKFB4,TMEM89,CELSR3,MIR711,SLC26A6
SE_02_053000457 chr3:48595699-48620231 Sample_02_0530 Mammary gland MCF10A 457 13 624 33 1 115 1096 UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,COL7A1,MIR4793,PFKFB4,TMEM89
SE_02_046600889 chr3:48597058-48631198 Sample_02_0466 Adipose visceral adipocytes 889 10 908 48 3 160 2417 SLC26A6,UQCRC1,TMEM89,UCN2,MIR711,MIR6824,CELSR3,MIR6823,CELSR3-AS1,COL7A1,MIR4793,PFKFB4
SE_02_072500143 chr3:48597072-48618898 Sample_02_0725 Mammary gland MCF10A-YAP5SA_ctrl 143 10 564 31 1 107 1096 UQCRC1,UCN2,MIR711,MIR6824,CELSR3,MIR6823,SLC26A6,CELSR3-AS1,COL7A1,MIR4793,PFKFB4,TMEM89
SE_02_104603201 chr3:48674587-48694217 Sample_02_1046 Peripheral blood CD4+ cells_CTCL1145 3201 10 504 41 2 199 1668 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_104701165 chr3:48678289-48714868 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 1165 18 869 76 4 243 1856 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_104901013 chr3:48678910-48720335 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1013 30 951 88 5 247 1944 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_039601469 chr3:48679941-48715000 Sample_02_0396 Skin NHEK-D 1469 10 807 73 4 207 1544 IP6K2,NCKIPSD,CELSR3,SLC26A6
SE_02_104300867 chr3:48680117-48714756 Sample_02_1043 Peripheral blood Peripheral blood cells_CTCL1200 867 24 800 72 4 205 1509 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_088600705 chr3:48680328-48717216 Sample_02_0886 Skin foreskin_ p63KLF4 705 12 841 79 5 215 1579 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_029400745 chr3:48682282-48717627 Sample_02_0294 Pancreatic L3-6_DMSO 745 6 801 72 4 205 1359 IP6K2,NCKIPSD,CELSR3,SLC26A6
SE_02_120501295 chr3:48682796-48715697 Sample_02_1205 Brain NB3 1295 8 747 66 4 184 1110 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_053000441 chr3:48682866-48714680 Sample_02_0530 Mammary gland MCF10A 441 14 725 64 3 179 1029 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_158300581 chr3:48683028-48714705 Sample_02_1583 Fetal lung IMR90_empty_GM 581 17 717 63 3 166 988 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_156001273 chr3:48683224-48714896 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1273 6 718 64 3 166 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_01_008800813 chr3:48683228-48709408 Sample_01_0088 Tibial nerve tibial-nerve 813 4 587 52 2 165 960 IP6K2,NCKIPSD,CELSR3,SLC26A6
SE_02_108200328 chr3:48683283-48717994 Sample_02_1082 Retina retina 328 7 773 71 4 188 1162 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_121200724 chr3:48683304-48696611 Sample_02_1212 Brain GBM30 724 3 327 27 1 157 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_097200674 chr3:48683374-48717781 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 674 7 764 71 4 188 1162 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_108300453 chr3:48683428-48718077 Sample_02_1083 Macula macula 453 9 770 71 4 188 1162 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_076000527 chr3:48683455-48717350 Sample_02_0760 Ovary BIN-67_SMARCA4 527 11 756 70 4 188 1104 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_119800847 chr3:48683463-48709604 Sample_02_1198 Brain GBM34 847 8 582 52 2 165 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_120000455 chr3:48683525-48715713 Sample_02_1200 Brain GBM36 455 9 725 65 4 170 1021 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_076201217 chr3:48683556-48715098 Sample_02_0762 Podocyte podocyte_CTL 1217 9 710 64 3 165 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_076300908 chr3:48683583-48714883 Sample_02_0763 Podocyte podocyte_DEX 908 4 709 64 3 165 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_119301014 chr3:48683600-48709905 Sample_02_1193 Brain GBM27 1014 7 587 52 2 164 960 IP6K2,NCKIPSD,MIR6824,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_103601635 chr3:48683886-48714756 Sample_02_1036 Mammary gland HCC70_XY018 1635 13 700 62 3 164 960 IP6K2,NCKIPSD,CELSR3,SLC26A6,CELSR3-AS1,MIR4793
SE_02_006300838 chr3:48691893-48718072 Sample_02_0063 Skin Keratinocytes 838 6 581 57 4 125 652 IP6K2,CELSR3,NCKIPSD
SE_02_010500804 chr3:48692180-48717281 Sample_02_0105 Skin neonatal_keratinocytes 804 3 558 55 4 123 582 IP6K2,CELSR3,NCKIPSD
SE_01_004100994 chr3:48693895-48717648 Sample_01_0041 Skin keratinocyte 994 3 522 53 4 88 516 IP6K2,CELSR3,NCKIPSD
SE_02_064502319 chr3:48693898-48714753 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 2319 6 468 45 3 66 319 IP6K2,MIR4793,NCKIPSD,CELSR3-AS1,CELSR3
SE_01_010901032 chr3:48694053-48748001 Sample_01_0109 Colon transverse colon_54y 1032 16 1232 101 4 104 544 IP6K2,MIR4793,NCKIPSD,CELSR3-AS1,CELSR3
SE_01_009500514 chr3:48694182-48717303 Sample_01_0095 Embryo neuroepithelial stem cell stably expressing HES5 originated from H9 514 5 507 50 3 79 397 IP6K2,MIR4793,NCKIPSD,CELSR3-AS1,CELSR3
SE_02_047800605 chr3:48707735-48741860 Sample_02_0478 Colon normal colon mucosa 605 17 796 63 2 30 202 IP6K2,NCKIPSD,CELSR3-AS1,CELSR3
SE_02_047700436 chr3:48708663-48747771 Sample_02_0477 Colon intestinal epithelial organoids_139a 436 18 908 70 2 43 222 IP6K2,NCKIPSD,CELSR3-AS1,CELSR3
Genomic distribution of SEs associated with CELSR3
Genome Browser

The strength of the tissue affected by the gene

Expression of CELSR3

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)