SEdb 2.0
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Gene overview

Strategies/Algorithm: proximal Ensembl ID: ENSG00000119688
Gene: ABCD4 Gene type: protein_coding
Strand: - External links:
Genomic region: chr14:74285269-74303055 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_108300891 chr14:74213792-74266150 Sample_02_1083 Macula macula 891 16 1647 205 12 293 1020 VSX2,ABCD4
SE_02_108200624 chr14:74217481-74266178 Sample_02_1082 Retina retina 624 21 1534 178 11 269 1020 VSX2,ABCD4
SE_02_027700302 chr14:74238601-74266757 Sample_02_0277 Retina FW18 302 3 897 96 6 185 1020 VSX2,ABCD4
SE_02_027500486 chr14:74238736-74266557 Sample_02_0275 Retina FW14 486 3 882 94 5 185 1020 VSX2,ABCD4
SE_02_027600287 chr14:74239032-74259211 Sample_02_0276 Retina FW15 287 3 634 69 4 148 437 VSX2,ABCD4
SE_02_003900633 chr14:74301806-74330552 Sample_02_0039 Embryo AFG 633 5 791 46 1 37 122 ABCD4,VRTN
SE_02_077502011 chr14:74316567-74379204 Sample_02_0775 Pancreas EndoC-BH1_SE 2011 22 1739 86 1 28 834 VRTN,ABCD4,SYNDIG1L
SE_02_101600933 chr14:74322995-74331140 Sample_02_1016 Embryo H9_Mesendoderm_24h 933 2 208 9 0 27 0 ABCD4,VRTN
SE_02_101700726 chr14:74323035-74361993 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 726 8 1057 57 0 28 834 VRTN,ABCD4,SYNDIG1L
SE_02_003600061 chr14:74323492-74369091 Sample_02_0036 Embryo H7 61 11 1250 67 1 28 834 VRTN,ABCD4
SE_02_075500030 chr14:74323525-74364957 Sample_02_0755 Embryo ES-derived progenitors_DE FOXA2 -/- 30 9 1112 60 1 28 834 VRTN,ABCD4
SE_02_157000566 chr14:74323654-74330276 Sample_02_1570 iPSCs EiPSC 566 3 162 5 0 27 0 ABCD4,VRTN
SE_02_101500211 chr14:74323783-74365583 Sample_02_1015 Embryo H9_ Undifferentiated 211 7 1122 60 1 26 834 VRTN,ABCD4,SYNDIG1L
SE_02_006600393 chr14:74324422-74328181 Sample_02_0066 Embryo AzL-S_phase 393 1 84 1 0 23 0 VRTN,ABCD4
SE_02_075600031 chr14:74324453-74365020 Sample_02_0756 Embryo ES-derived progenitors_FG FOXA2 -/- 31 8 1087 60 1 24 834 VRTN,ABCD4
SE_02_075200040 chr14:74324511-74364938 Sample_02_0752 Embryo ES-derived progenitors_DE_wild type 40 5 1086 60 1 21 834 VRTN,ABCD4
SE_02_156700557 chr14:74324590-74330317 Sample_02_1567 iPSCs CiPSC 557 3 143 5 0 19 0 ABCD4,VRTN
SE_02_157200762 chr14:74324658-74328507 Sample_02_1572 iPSCs FiPSC 762 1 87 1 0 19 0 ABCD4,VRTN
SE_02_032900138 chr14:74324728-74329681 Sample_02_0329 Embryo H9_primed 138 1 120 4 0 19 0 VRTN,ABCD4
SE_02_117200528 chr14:74324738-74329215 Sample_02_1172 Embryo H9 WT 528 1 111 2 0 19 0 ABCD4,VRTN
SE_02_003800231 chr14:74324804-74330562 Sample_02_0038 Embryo DE 231 2 142 5 0 19 0 VRTN,ABCD4
SE_00_002400320 chr14:74324820-74328461 Sample_00_0024 Embryo mesendoderm 320 1 83 1 0 19 0 VRTN,ABCD4
SE_02_001800240 chr14:74324854-74328739 Sample_02_0018 Embryo NEC 240 1 90 1 0 19 0 VRTN,ABCD4
SE_01_005100405 chr14:74324864-74328608 Sample_01_0051 Embryo neural-progenitor-cell 405 1 85 1 0 19 0 VRTN,ABCD4
SE_02_006400608 chr14:74324868-74328872 Sample_02_0064 Embryo DN-Early_G1 608 1 95 1 0 19 0 VRTN,ABCD4
SE_02_004000338 chr14:74324920-74328842 Sample_02_0040 Embryo PFG 338 1 92 1 0 19 0 VRTN,ABCD4
SE_00_001200249 chr14:74324933-74328407 Sample_00_0012 Embryo H1-hESC 249 2 81 1 0 19 0 VRTN,ABCD4
SE_02_041800334 chr14:74324952-74328434 Sample_02_0418 Embryo H9_Null+EZH2 334 1 81 1 0 19 0 VRTN,ABCD4
SE_00_001800282 chr14:74324976-74327974 Sample_00_0018 Dermal fibroblasts iPS-18axian 282 1 70 1 0 19 0 VRTN,ABCD4
SE_02_001700400 chr14:74324982-74328435 Sample_02_0017 Embryo H9_ESC 400 1 81 1 0 19 0 VRTN,ABCD4
SE_02_004300011 chr14:74324994-74364892 Sample_02_0043 Embryo endodermal CyT49_ES_D2 11 8 1077 60 1 20 834 VRTN,ABCD4
SE_00_001600253 chr14:74324997-74328534 Sample_00_0016 Foreskin iPS-DF-19.11 258 1 83 1 0 19 0 VRTN,ABCD4
SE_00_001300170 chr14:74325037-74327879 Sample_00_0013 Embryo H9 170 2 68 1 0 18 0 VRTN,ABCD4
SE_02_074200342 chr14:74325044-74330407 Sample_02_0742 Embryo ESCs_day0 342 3 136 5 0 18 0 ABCD4,VRTN
SE_02_086100651 chr14:74325102-74328411 Sample_02_0861 iPSCs SAH_WT 651 3 77 1 0 18 0 ABCD4,VRTN
SE_02_074300265 chr14:74325108-74330259 Sample_02_0743 Embryo ES derived mesoderm_day2 265 3 130 5 0 18 0 ABCD4,VRTN
SE_02_055900561 chr14:74325112-74329365 Sample_02_0559 iPSCs FX52 iPSCs dC-T 561 3 104 2 0 18 0 ABCD4,VRTN
SE_00_004800249 chr14:74325116-74328282 Sample_00_0048 Embryo neuronal stem cell originated from H1 249 5 74 1 0 17 0 ABCD4,VRTN
SE_02_056000427 chr14:74325122-74328256 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 427 2 74 1 0 17 0 ABCD4,VRTN
SE_02_067900493 chr14:74325131-74331406 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 493 7 163 10 0 17 0 ABCD4,VRTN
SE_02_067800470 chr14:74325461-74329503 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 470 4 101 1 0 14 0 ABCD4,VRTN
SE_01_011600067 chr14:74325918-74327584 Sample_01_0116 Embryo H1-hESC 67 2 35 0 0 14 0 ABCD4,VRTN
SE_02_075300207 chr14:74345104-74362436 Sample_02_0753 Embryo ES-derived progenitors_FG type 207 5 460 16 0 0 834 VRTN,ABCD4
SE_02_067800252 chr14:74345111-74350505 Sample_02_0678 Embryo H1 hESC-derived neural progenitor cells_Smad_12hr 252 2 130 6 0 0 114 VRTN,ABCD4
SE_02_067900087 chr14:74345157-74364896 Sample_02_0679 Embryo H1 hESC-derived neural progenitor cells_Smad_24hr 87 5 515 20 1 0 834 VRTN,ABCD4,VSX2,SYNDIG1L
SE_02_055900144 chr14:74345827-74364648 Sample_02_0559 iPSCs FX52 iPSCs dC-T 144 4 496 20 1 0 834 VRTN,ABCD4
SE_02_003800106 chr14:74345953-74365853 Sample_02_0038 Embryo DE 106 5 519 20 1 0 834 VRTN,ABCD4
SE_00_002400100 chr14:74345969-74365035 Sample_00_0024 Embryo mesendoderm 100 5 494 20 1 0 834 VRTN,ABCD4
SE_02_055800156 chr14:74346011-74352503 Sample_02_0558 iPSCs FX52 iPSCs mock 156 3 158 8 0 0 114 VRTN,ABCD4
SE_02_003901163 chr14:74346056-74365065 Sample_02_0039 Embryo AFG 1163 5 493 20 1 0 834 VRTN,ABCD4
SE_02_004001072 chr14:74346064-74364854 Sample_02_0040 Embryo PFG 1072 5 491 20 1 0 834 VRTN,ABCD4
SE_02_157200758 chr14:74346100-74369224 Sample_02_1572 iPSCs FiPSC 758 6 630 26 1 0 834 VRTN,ABCD4
SE_02_056000109 chr14:74346121-74362335 Sample_02_0560 iPSCs FX52_Cas9-inactive Tet1_CGG sgRNA 109 3 432 16 0 0 834 VRTN,ABCD4
SE_02_157000803 chr14:74346160-74364756 Sample_02_1570 iPSCs EiPSC 803 8 485 20 1 0 834 VRTN,ABCD4
SE_02_074300496 chr14:74346162-74365649 Sample_02_0743 Embryo ES derived mesoderm_day2 496 10 507 20 1 0 834 VRTN,ABCD4
SE_02_117200499 chr14:74346169-74362061 Sample_02_1172 Embryo H9 WT 499 2 425 16 0 0 834 VRTN,ABCD4,SYNDIG1L
SE_02_156700717 chr14:74346250-74362809 Sample_02_1567 iPSCs CiPSC 717 8 436 18 1 0 834 VRTN,ABCD4
SE_02_001800456 chr14:74346871-74363118 Sample_02_0018 Embryo NEC 456 2 427 16 1 0 834 VRTN,ABCD4
SE_02_001700083 chr14:74346878-74360879 Sample_02_0017 Embryo H9_ESC 83 3 372 12 0 0 834 VRTN,ABCD4
SE_00_001200312 chr14:74346883-74362880 Sample_00_0012 Embryo H1-hESC 312 2 422 16 1 0 834 VRTN,ABCD4
SE_02_004800834 chr14:74346987-74351228 Sample_02_0048 Embryo endodermal CyT49_HE 834 1 102 6 0 0 114 VRTN,ABCD4
SE_02_004400180 chr14:74347110-74350641 Sample_02_0044 Embryo endodermal CyT49_ES_D5 180 1 81 3 0 0 114 VRTN,ABCD4
SE_02_068100278 chr14:74347486-74362225 Sample_02_0681 Embryo H1 hESC-derived neural progenitor cells_Smad_72hr 278 3 395 13 0 0 834 VRTN,ABCD4,VSX2,SYNDIG1L
Genomic distribution of SEs associated with ABCD4
Genome Browser

The strength of the tissue affected by the gene

Expression of ABCD4

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)