SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000088726
Gene: TMEM40 Gene type: protein_coding
Strand: - External links:
Genomic region: chr3:12733528-12769457 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_089200320 chr3:12621337-12763889 Sample_02_0892 Heart left ventricle_LV1215 320 33 4102 406 7 100 1175 RAF1,TMEM40,CAND2
SE_02_092300444 chr3:12679565-12763920 Sample_02_0923 Heart fetal heart_PCW10_12522 444 15 2472 213 5 61 979 TMEM40,RAF1,CAND2
SE_02_074700292 chr3:12679586-12767038 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 292 34 2557 227 5 62 979 TMEM40,RAF1,CAND2
SE_02_038100159 chr3:12680979-12765126 Sample_02_0381 Heart purified cardiomyocyte WT 159 12 2468 221 5 61 979 TMEM40,RAF1,CAND2
SE_02_038200166 chr3:12681019-12811296 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 166 18 3869 410 11 99 1695 CAND2,TMEM40,RAF1,SNORA7A,RPL32
SE_02_092100400 chr3:12681731-12763909 Sample_02_0921 Heart embryonic heart_CS22 400 22 2416 211 5 61 979 TMEM40,RAF1,CAND2
SE_02_130400413 chr3:12693829-12773896 Sample_02_1304 Lymphoma RL_lenalidomide_tazemetostat 413 34 2342 223 4 62 1114 TMEM40,RAF1,CAND2
SE_02_115400187 chr3:12705943-12838258 Sample_02_1154 Lymphoma RL_R1446C_gRNA1_KDAC001 187 26 3997 410 11 205 3274 TMEM40,RPL32,CAND2,SNORA7A,RAF1
SE_02_074600765 chr3:12709076-12746807 Sample_02_0746 Embryo ES derived primitive cardiomyocite_day15 765 9 1099 78 1 30 746 TMEM40,RAF1,CAND2
SE_02_115300263 chr3:12716178-12819785 Sample_02_1153 Lymphoma RL_R1446C_gRNA1 263 17 3132 336 9 161 2481 TMEM40,CAND2,SNORA7A,RPL32
SE_02_092400826 chr3:12719752-12763845 Sample_02_0924 Heart fetal heart_PCW10_12569 826 9 1315 108 1 57 979 TMEM40,CAND2,RAF1
SE_02_092200941 chr3:12719794-12763922 Sample_02_0922 Heart fetal heart_PCW10_12434 941 10 1315 108 1 57 979 TMEM40,CAND2,RAF1
SE_02_103602713 chr3:12731631-12762240 Sample_02_1036 Mammary gland HCC70_XY018 2713 9 930 73 0 44 979 TMEM40,CAND2
SE_02_103100399 chr3:12736132-12772604 Sample_02_1031 Head and neck SCC1 contol 399 18 1086 108 0 46 869 TMEM40,CAND2
SE_02_093000805 chr3:12737220-12764789 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 805 9 820 78 0 43 619 TMEM40,CAND2,RAF1
SE_02_039600571 chr3:12737847-12769331 Sample_02_0396 Skin NHEK-D 571 13 951 94 0 44 653 TMEM40,CAND2
SE_02_041700262 chr3:12738160-12750587 Sample_02_0417 Embryo H9_Null 262 3 376 12 0 14 412 TMEM40,CAND2
SE_02_064000551 chr3:12738256-12764219 Sample_02_0640 Mammary gland MDA-MB-436_DMSO 551 6 776 68 0 41 492 TMEM40,CAND2
SE_02_103200602 chr3:12741853-12766333 Sample_02_1032 Head and neck SCC1 JQ1 602 14 726 76 0 37 381 TMEM40,CAND2
SE_00_003100790 chr3:12749189-12765268 Sample_00_0031 Placenta placenta 790 2 475 66 0 29 158 TMEM40,CAND2
SE_02_061000199 chr3:12749201-12767077 Sample_02_0610 Liposarcoma MLS 1765-92 199 6 524 71 0 30 158 TMEM40,CAND2
SE_02_111100827 chr3:12749226-12764193 Sample_02_1111 Other HGrC1_SMAD2/3KO 827 5 443 58 0 29 158 TMEM40,CAND2
SE_02_009900446 chr3:12749291-12764626 Sample_02_0099 Foreskin Epidermal-Stem-Cells_shDNMT3B 446 5 458 65 0 29 158 TMEM40,CAND2
SE_02_065900541 chr3:12749316-12767737 Sample_02_0659 Lung H23 541 7 542 74 0 30 158 TMEM40,CAND2
SE_02_064200257 chr3:12749369-12764353 Sample_02_0642 Mammary gland MDA-MB-436_20C paclitaxel 257 7 443 58 0 29 158 TMEM40,CAND2
SE_02_064300239 chr3:12749384-12764254 Sample_02_0643 Mammary gland MDA-MB-436 239 4 441 58 0 29 158 TMEM40,CAND2
SE_02_006300813 chr3:12749391-12764885 Sample_02_0063 Skin Keratinocytes 813 1 458 66 0 29 158 TMEM40,CAND2
SE_02_153900956 chr3:12749444-12764110 Sample_02_1539 Nasopharyngeal C666-1 956 10 434 57 0 29 158 TMEM40,CAND2
SE_02_123100615 chr3:12749586-12764169 Sample_02_1231 Lung PC9_siMED13L-1 615 4 431 58 0 29 157 TMEM40,CAND2
SE_02_102500375 chr3:12749590-12767050 Sample_02_1025 Esophagus KYSE150 375 5 511 71 0 30 157 TMEM40,CAND2
SE_02_103700141 chr3:12749604-12764860 Sample_02_1037 Pharynx FaDu Control 141 4 451 66 0 29 156 TMEM40,CAND2
SE_02_123000658 chr3:12749632-12764239 Sample_02_1230 Lung PC9 658 5 431 58 0 29 155 TMEM40,CAND2
SE_02_010500442 chr3:12749652-12764369 Sample_02_0105 Skin neonatal_keratinocytes 442 2 434 58 0 29 151 TMEM40,CAND2
SE_02_049100782 chr3:12749700-12766145 Sample_02_0491 Pharyng Detroit 562-Control 782 6 487 69 0 29 144 TMEM40,CAND2
SE_02_137901086 chr3:12749707-12763900 Sample_02_1379 Pancreas Pancreatic_tumor_associated_fibroblasts_PS1_untreated 1086 5 420 56 0 29 143 TMEM40,CAND2
SE_02_048000530 chr3:12749742-12764834 Sample_02_0480 Gingival epithelial HGEP 530 12 444 65 0 29 134 TMEM40,CAND2
SE_01_002700802 chr3:12749746-12764352 Sample_01_0027 Prostate epithelial-cell-of-prostate 802 3 429 57 0 29 134 TMEM40,CAND2
SE_02_135800582 chr3:12749824-12764258 Sample_02_1358 Other IC8-deltaEGF-L1596H_GSI_2h 582 6 425 57 0 28 125 TMEM40,CAND2
SE_02_049200712 chr3:12749840-12766125 Sample_02_0492 Pharyng Detroit 562_LPS 712 6 481 69 0 28 122 TMEM40,CAND2
SE_02_135900745 chr3:12749850-12764809 Sample_02_1359 Other IC8-deltaEGF-L1596H_GSI_4h 745 7 440 65 0 28 122 TMEM40,CAND2
SE_02_103800148 chr3:12749886-12764653 Sample_02_1038 Pharynx FaDu LPS 148 4 436 65 0 28 120 TMEM40,CAND2
SE_02_135700470 chr3:12749947-12764268 Sample_02_1357 Other IC8-deltaEGF-L1596H_GSI_0h 470 9 421 57 0 28 119 TMEM40,CAND2
SE_02_154101125 chr3:12749949-12764009 Sample_02_1541 Nasopharyngeal HNE1 1125 10 413 56 0 28 119 TMEM40,CAND2
SE_01_010701174 chr3:12750047-12764167 Sample_01_0107 Esophagus esophagus squamous epithelium 1174 4 413 56 0 28 102 TMEM40,CAND2
SE_02_065201192 chr3:12750064-12764083 Sample_02_0652 Tracheobronchial epithelial HTBE_H3N2_mock 1192 4 409 55 0 28 102 TMEM40,CAND2
SE_02_113200553 chr3:12750179-12764554 Sample_02_1132 Pancreas KLM1 wt 553 7 424 59 0 28 102 TMEM40,CAND2
SE_02_009700797 chr3:12750285-12764144 Sample_02_0097 Foreskin Epidermal-Stem-Cells_shCTRL 797 5 408 56 0 28 102 TMEM40,CAND2
SE_02_112100344 chr3:12750479-12764207 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 344 10 405 56 0 28 102 TMEM40,CAND2
SE_02_107300420 chr3:12750814-12765558 Sample_02_1073 Keratinocyte keratinocytes stem cell 420 5 435 65 0 28 102 TMEM40,CAND2
SE_02_092900564 chr3:12750841-12764462 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 564 7 406 59 0 28 102 TMEM40,CAND2
SE_02_072600322 chr3:12751142-12763836 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 322 6 379 54 0 28 102 TMEM40,CAND2
SE_02_136101219 chr3:12751882-12764770 Sample_02_1361 Bladder UMUC1_sonic_pSIN-puro_WTUTX 1219 7 364 63 0 28 102 TMEM40,CAND2
SE_02_125400889 chr3:12752629-12761433 Sample_02_1254 Bladder Bladder tumor Basal1 889 4 246 41 0 19 102 TMEM40,CAND2
SE_02_124800504 chr3:12752700-12761455 Sample_02_1248 Bladder RT4 504 2 244 41 0 19 102 TMEM40,CAND2
SE_00_001100859 chr3:12752755-12761425 Sample_00_0011 Esophagus esophagus 859 4 243 41 0 19 102 TMEM40,CAND2
SE_02_112000489 chr3:12753518-12764068 Sample_02_1120 Neonatal foreskin keratinocytes_CTR 489 4 283 46 0 28 102 TMEM40,CAND2
Genomic distribution of SEs associated with TMEM40
Genome Browser

The strength of the tissue affected by the gene

Expression of TMEM40

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)