| SE_02_075200886 |
chr9:10028352-10054661 |
Sample_02_0752 |
Embryo |
ES-derived progenitors_DE_wild type |
886 |
5 |
1000 |
0 | 8 | 42 |
22 |
PTPRD |
| SE_02_038200919 |
chr9:10039480-10064332 |
Sample_02_0382 |
Heart |
purified cardiomyocyte G296S mutants |
919 |
4 |
938 |
0 | 6 | 69 |
0 |
PTPRD |
| SE_02_068701243 |
chr9:10164146-10174534 |
Sample_02_0687 |
Lung |
NCI-H146_no infection |
1243 |
5 |
367 |
0 | 0 | 18 |
0 |
PTPRD |
| SE_02_038200669 |
chr9:10248614-10282214 |
Sample_02_0382 |
Heart |
purified cardiomyocyte G296S mutants |
669 |
6 |
1481 |
6 | 6 | 53 |
0 |
PTPRD |
| SE_02_044500807 |
chr9:8364217-8433039 |
Sample_02_0445 |
Lung |
lung metastasis from primary osteosarcoma tumor M10 |
807 |
37 |
2456 |
2 | 9 | 270 |
185 |
PTPRD |
| SE_01_005000519 |
chr9:8619422-8630011 |
Sample_01_0050 |
Embryo |
neural-cell |
519 |
2 |
433 |
1 | 1 | 35 |
0 |
PTPRD |
| SE_02_130100013 |
chr9:8628502-8745822 |
Sample_02_1301 |
Blood |
PER-117 |
13 |
38 |
4684 |
8 | 14 | 385 |
166 |
PTPRD |
| SE_02_074000998 |
chr9:8643560-8737280 |
Sample_02_0740 |
Muscle |
RH3 |
998 |
22 |
3737 |
7 | 12 | 301 |
63 |
PTPRD |
| SE_02_044500045 |
chr9:8647780-8873329 |
Sample_02_0445 |
Lung |
lung metastasis from primary osteosarcoma tumor M10 |
45 |
95 |
8931 |
143 | 39 | 901 |
401 |
PTPRD-AS1,PTPRD |
| SE_02_001100497 |
chr9:8713939-8740020 |
Sample_02_0011 |
Kidney |
A-498_wtVHL |
497 |
7 |
1035 |
2 | 2 | 109 |
63 |
PTPRD |
| SE_02_055400300 |
chr9:8715846-8737147 |
Sample_02_0554 |
Other |
Aska shSSX |
300 |
9 |
857 |
1 | 1 | 106 |
63 |
PTPRD |
| SE_02_141001355 |
chr9:8715917-8755053 |
Sample_02_1410 |
Brain |
GSC6 |
1355 |
7 |
1602 |
3 | 2 | 129 |
63 |
PTPRD |
| SE_02_085701078 |
chr9:8716183-8755682 |
Sample_02_0857 |
Glioblastoma |
Glioblastoma neurosphere cell_HF-3035 |
1078 |
9 |
1624 |
3 | 2 | 129 |
63 |
PTPRD |
| SE_02_101701446 |
chr9:8716259-8763491 |
Sample_02_1017 |
Embryo |
H9_Mesendoderm 24h_Hydroxyurea |
1446 |
9 |
1950 |
5 | 3 | 143 |
63 |
PTPRD |
| SE_02_059401048 |
chr9:8716633-8756214 |
Sample_02_0594 |
iPSC-derived |
neural progenitors |
1048 |
9 |
1636 |
3 | 2 | 129 |
63 |
PTPRD |
| SE_02_101600805 |
chr9:8716807-8763250 |
Sample_02_1016 |
Embryo |
H9_Mesendoderm_24h |
805 |
8 |
1912 |
4 | 3 | 143 |
63 |
PTPRD |
| SE_00_002401321 |
chr9:8749995-8763573 |
Sample_00_0024 |
Embryo |
mesendoderm |
1321 |
2 |
598 |
3 | 1 | 21 |
0 |
PTPRD |
| SE_02_074000131 |
chr9:8773013-8880026 |
Sample_02_0740 |
Muscle |
RH3 |
131 |
40 |
4078 |
145 | 28 | 551 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_107800188 |
chr9:8773189-8852737 |
Sample_02_1078 |
Muscle |
RMS235_PAX3-NCOA1 |
188 |
45 |
3181 |
109 | 21 | 356 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_059401450 |
chr9:8781210-8836133 |
Sample_02_0594 |
iPSC-derived |
neural progenitors |
1450 |
11 |
2167 |
46 | 14 | 227 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_141300202 |
chr9:8783473-8826021 |
Sample_02_1413 |
Muscle |
RH4_sgBRG1 |
202 |
13 |
1659 |
24 | 5 | 192 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_101701370 |
chr9:8799049-8835591 |
Sample_02_1017 |
Embryo |
H9_Mesendoderm 24h_Hydroxyurea |
1370 |
11 |
1433 |
44 | 12 | 130 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_101501010 |
chr9:8822822-8876216 |
Sample_02_1015 |
Embryo |
H9_ Undifferentiated |
1010 |
9 |
1933 |
123 | 18 | 307 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_121300426 |
chr9:8832580-8901782 |
Sample_02_1213 |
Brain |
GBM31 |
426 |
25 |
2405 |
107 | 17 | 372 |
361 |
PTPRD-AS1,PTPRD |
| SE_02_120500480 |
chr9:8832667-8896353 |
Sample_02_1205 |
Brain |
NB3 |
480 |
23 |
2194 |
107 | 14 | 353 |
361 |
PTPRD-AS1,PTPRD |
| SE_02_141300098 |
chr9:8839635-8864715 |
Sample_02_1413 |
Muscle |
RH4_sgBRG1 |
98 |
7 |
954 |
73 | 7 | 221 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_117300732 |
chr9:8840767-8896228 |
Sample_02_1173 |
Brain |
GBM01 |
732 |
23 |
1881 |
92 | 13 | 340 |
361 |
PTPRD-AS1,PTPRD |
| SE_02_120300470 |
chr9:8840786-8880043 |
Sample_02_1203 |
Brain |
NB1 |
470 |
16 |
1367 |
87 | 12 | 282 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_120400685 |
chr9:8842319-8879973 |
Sample_02_1204 |
Brain |
NB2 |
685 |
17 |
1298 |
81 | 12 | 280 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_119600978 |
chr9:8842602-8878774 |
Sample_02_1196 |
Brain |
GBM32 |
978 |
23 |
1247 |
80 | 10 | 278 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_035000690 |
chr9:8842629-8878131 |
Sample_02_0350 |
Dorsolateral prefrontal cortex |
dorsolateral-prefrontal-cortex |
690 |
9 |
1222 |
80 | 10 | 275 |
338 |
PTPRD |
| SE_02_121100587 |
chr9:8842696-8878770 |
Sample_02_1211 |
Brain |
GBM21 |
587 |
13 |
1246 |
80 | 10 | 277 |
338 |
PTPRD-AS1,PTPRD |
| SE_01_002100948 |
chr9:8844558-8860819 |
Sample_01_0021 |
Skin |
bipolar-neuron |
948 |
3 |
618 |
56 | 7 | 167 |
260 |
PTPRD |
| SE_02_006400552 |
chr9:8852202-8877161 |
Sample_02_0064 |
Embryo |
DN-Early_G1 |
552 |
5 |
816 |
35 | 4 | 193 |
338 |
PTPRD |
| SE_02_101701894 |
chr9:8852375-8895588 |
Sample_02_1017 |
Embryo |
H9_Mesendoderm 24h_Hydroxyurea |
1894 |
10 |
1396 |
42 | 8 | 245 |
361 |
PTPRD-AS1,PTPRD |
| SE_02_096200815 |
chr9:8853464-8859150 |
Sample_02_0962 |
Brain |
H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells |
815 |
2 |
200 |
9 | 2 | 78 |
150 |
PTPRD-AS1,PTPRD |
| SE_02_059401200 |
chr9:8853678-8871259 |
Sample_02_0594 |
iPSC-derived |
neural progenitors |
1200 |
2 |
589 |
17 | 3 | 158 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_127801078 |
chr9:8854211-8872910 |
Sample_02_1278 |
Chordoma |
UCH1_DMSO_48h |
1078 |
3 |
601 |
16 | 2 | 169 |
338 |
PTPRD-AS1,PTPRD |
| SE_02_154300413 |
chr9:9034827-9046343 |
Sample_02_1543 |
Gastrointestinal Stromal |
GIST-48 |
413 |
11 |
452 |
1 | 3 | 73 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_123600471 |
chr9:9133739-9148716 |
Sample_02_1236 |
Skin |
MKL1_virus_positive |
471 |
6 |
574 |
0 | 3 | 24 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_150000627 |
chr9:9169294-9193827 |
Sample_02_1500 |
Brain |
KELLY_untreat |
627 |
7 |
920 |
0 | 4 | 100 |
34 |
PTPRD,PTPRD-AS1 |
| SE_02_077600694 |
chr9:9384764-9414448 |
Sample_02_0776 |
Pancreas |
EndoC-BH1 |
694 |
5 |
1179 |
0 | 5 | 68 |
20 |
PTPRD,PTPRD-AS1 |
| SE_02_117200849 |
chr9:9554775-9560912 |
Sample_02_1172 |
Embryo |
H9 WT |
849 |
2 |
245 |
0 | 0 | 0 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_156700767 |
chr9:9555881-9559231 |
Sample_02_1567 |
iPSCs |
CiPSC |
767 |
1 |
131 |
0 | 0 | 0 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_157000748 |
chr9:9556100-9559355 |
Sample_02_1570 |
iPSCs |
EiPSC |
748 |
1 |
127 |
0 | 0 | 0 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_099800109 |
chr9:9600466-9708344 |
Sample_02_0998 |
Lymphoma |
OCI-LY1_DMSO |
109 |
68 |
4148 |
15 | 3 | 207 |
0 |
PTPRD,PTPRD-AS1 |
| SE_02_099900029 |
chr9:9601300-9825777 |
Sample_02_0999 |
Lymphoma |
OCI-LY1_966 |
29 |
168 |
8909 |
74 | 27 | 476 |
38 |
PTPRD,PTPRD-AS1 |
| SE_02_099800332 |
chr9:9725376-9813117 |
Sample_02_0998 |
Lymphoma |
OCI-LY1_DMSO |
332 |
66 |
3581 |
33 | 20 | 219 |
38 |
PTPRD |
| SE_02_127800357 |
chr9:9731961-9763365 |
Sample_02_1278 |
Chordoma |
UCH1_DMSO_48h |
357 |
10 |
1242 |
1 | 2 | 75 |
19 |
PTPRD |
| SE_02_099900622 |
chr9:9889890-9920552 |
Sample_02_0999 |
Lymphoma |
OCI-LY1_966 |
622 |
31 |
1401 |
2 | 7 | 76 |
0 |
PTPRD |
| SE_02_033600424 |
chr9:9898497-9927660 |
Sample_02_0336 |
Haematopoietic and lymphoid tissue |
SET2 |
424 |
2 |
1287 |
0 | 8 | 72 |
0 |
PTPRD |
| SE_02_082100561 |
chr9:9901403-9925067 |
Sample_02_0821 |
Haematopoietic and lymphoid tissue |
SET-2_WT_GSK-LSD1 |
561 |
4 |
1027 |
0 | 8 | 71 |
0 |
PTPRD |
| SE_02_082200558 |
chr9:9901931-9925027 |
Sample_02_0822 |
Haematopoietic and lymphoid tissue |
SET-2_insR_DMSO |
558 |
4 |
1010 |
0 | 8 | 71 |
0 |
PTPRD |
| SE_02_014000131 |
chr9:9905273-9947218 |
Sample_02_0140 |
Kidney |
RT242 |
131 |
5 |
1863 |
0 | 9 | 73 |
37 |
PTPRD |
| SE_02_033600369 |
chr9:9993893-10007591 |
Sample_02_0336 |
Haematopoietic and lymphoid tissue |
SET2 |
369 |
1 |
435 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_057600209 |
chr9:9995097-10006096 |
Sample_02_0576 |
Blood |
HEL_sgLKB1e2 |
209 |
4 |
347 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_057900218 |
chr9:9995116-10005848 |
Sample_02_0579 |
Blood |
HEL_sgNeg2 |
218 |
5 |
341 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_058000259 |
chr9:9995203-10005889 |
Sample_02_0580 |
Blood |
HEL_sgSIK3e4 |
259 |
5 |
341 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_003800621 |
chr9:9995255-10012948 |
Sample_02_0038 |
Embryo |
DE |
621 |
5 |
583 |
1 | 3 | 0 |
0 |
PTPRD |
| SE_02_075200446 |
chr9:9995666-10013320 |
Sample_02_0752 |
Embryo |
ES-derived progenitors_DE_wild type |
446 |
5 |
577 |
1 | 3 | 0 |
0 |
PTPRD |
| SE_02_082200544 |
chr9:9995690-10005458 |
Sample_02_0822 |
Haematopoietic and lymphoid tissue |
SET-2_insR_DMSO |
544 |
3 |
313 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_117000090 |
chr9:9995807-10006260 |
Sample_02_1170 |
Blood |
HEL92.1.7 |
90 |
9 |
324 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_082000609 |
chr9:9996377-10005540 |
Sample_02_0820 |
Haematopoietic and lymphoid tissue |
SET-2_WT_DMSO |
609 |
2 |
294 |
0 | 2 | 0 |
0 |
PTPRD |
| SE_02_004300788 |
chr9:9998171-10010803 |
Sample_02_0043 |
Embryo endodermal |
CyT49_ES_D2 |
788 |
6 |
410 |
1 | 2 | 0 |
0 |
PTPRD |
| SE_02_075501303 |
chr9:9998192-10012854 |
Sample_02_0755 |
Embryo |
ES-derived progenitors_DE FOXA2 -/- |
1303 |
3 |
491 |
1 | 3 | 0 |
0 |
PTPRD |
