Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000153012 |
| Gene: | LGI2 | Gene type: | protein_coding |
| Strand: | - | External links: |
|
| Genomic region: | chr4:24998847-25030946 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_155500072 | chr4:24966177-25014738 |
Sample_02_1555 | Gastrointestinal Stromal | GIST-4_KIT e9 | 72 | 25 | 1467 | 89 | 6 | 129 | 780 | CCDC149,LGI2 |
| SE_02_155300739 | chr4:24966743-25022375 |
Sample_02_1553 | Gastrointestinal Stromal | GIST-2_KIT e11 | 739 | 16 | 1655 | 112 | 7 | 162 | 840 | CCDC149,LGI2 |
| SE_02_109700084 | chr4:24970177-25002455 |
Sample_02_1097 | Haematopoietic and lymphoid tissue | 697 | 84 | 10 | 934 | 68 | 3 | 71 | 491 | CCDC149,LGI2 |
| SE_02_036300144 | chr4:24970328-25002619 |
Sample_02_0363 | Haematopoietic and lymphoid tissue | 697 | 144 | 3 | 933 | 68 | 3 | 71 | 506 | CCDC149,LGI2 |
| SE_02_155400318 | chr4:24982287-25031861 |
Sample_02_1554 | Gastrointestinal Stromal | GIST-3_KIT e11 | 318 | 13 | 1446 | 121 | 8 | 222 | 1128 | LGI2,CCDC149 |
| SE_02_156000983 | chr4:24982776-25022678 |
Sample_02_1560 | Gastrointestinal Stromal | GIST-9_PDGFRA e18 | 983 | 10 | 1180 | 100 | 7 | 127 | 787 | LGI2,CCDC149 |
| SE_02_156400080 | chr4:24983475-25014814 |
Sample_02_1564 | Gastrointestinal Stromal | GIST-430 | 80 | 16 | 951 | 76 | 6 | 94 | 727 | LGI2,CCDC149 |
| SE_02_148100899 | chr4:24985083-25034161 |
Sample_02_1481 | Bone | MIC | 899 | 9 | 1440 | 120 | 8 | 229 | 1128 | LGI2,CCDC149 |
| SE_02_154600145 | chr4:24991451-25015535 |
Sample_02_1546 | Gastrointestinal Stromal | GIST-430/654 | 145 | 12 | 730 | 61 | 5 | 101 | 727 | LGI2,CCDC149 |
| SE_02_156300202 | chr4:24998244-25014895 |
Sample_02_1563 | Gastrointestinal Stromal | GIST-12_SDHC deletion | 202 | 4 | 522 | 43 | 5 | 71 | 727 | LGI2,CCDC149 |
| SE_02_154300265 | chr4:24998368-25015730 |
Sample_02_1543 | Gastrointestinal Stromal | GIST-48 | 265 | 5 | 530 | 45 | 5 | 89 | 727 | LGI2,CCDC149 |
| SE_02_014000440 | chr4:24999530-25033106 |
Sample_02_0140 | Kidney | RT242 | 440 | 5 | 983 | 83 | 7 | 195 | 1049 | LGI2,CCDC149 |
Genomic distribution of SEs associated with LGI2