SEdb 2.0
  1. Search
  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000099337
Gene: KCNK6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr19:38319845-38332076 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_002100353 chr19:38289911-38320556 Sample_02_0021 Colon V429 353 4 865 87 2 91 1844 YIF1B,SPINT2,C19ORF33,KCNK6,PPP1R14A,CATSPERG
SE_03_001301004 chr19:38298147-38320885 Sample_03_0013 Lung A549 1004 3 646 72 2 78 1500 C19ORF33,YIF1B,KCNK6,PPP1R14A,SPINT2,CATSPERG
SE_02_122900547 chr19:38306175-38335551 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 547 14 786 88 1 82 1529 KCNK6,YIF1B,C19ORF33,PSMD8,SPINT2,CATSPERG,PPP1R14A,FAM98C,C19orf33,RASGRP4,SPRED3,DPF1
SE_02_109900533 chr19:38310793-38323691 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 533 7 315 34 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG,SPRED3,PSMD8,DPF1,PPP1R14A,FAM98C
SE_04_000200777 chr19:38311211-38328795 Sample_04_0002 Blood cold shocked K562 777 3 446 56 1 63 875 KCNK6,YIF1B,C19ORF33,PSMD8,SPINT2,CATSPERG,SPRED3,DPF1,PPP1R14A,FAM98C
SE_02_113000482 chr19:38311509-38323636 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 482 5 299 34 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG,SPRED3,PSMD8,DPF1,PPP1R14A,FAM98C
SE_02_111600289 chr19:38311574-38322362 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 289 2 265 32 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG,SPRED3,PSMD8,DPF1,PPP1R14A,FAM98C
SE_02_098800830 chr19:38311592-38322066 Sample_02_0988 Blood K562_EPZ 830 5 258 32 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG,SPRED3,PSMD8,DPF1,PPP1R14A,FAM98C
SE_02_033600799 chr19:38312350-38322512 Sample_02_0336 Haematopoietic and lymphoid tissue SET2 799 1 250 29 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG
SE_02_083500843 chr19:38312602-38322183 Sample_02_0835 Bone marrow TEX-HIST1H3H-K27M-Rx_cells 843 3 240 28 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG
SE_02_054500627 chr19:38312791-38322190 Sample_02_0545 Bone marrow K562 WT 627 3 236 27 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG,SPRED3,PSMD8,DPF1,PPP1R14A,FAM98C
SE_02_083300900 chr19:38312856-38322159 Sample_02_0833 Bone marrow TEX-HIST1H3F-K27I-2-Rx_cells 900 3 232 26 1 46 366 KCNK6,YIF1B,C19ORF33,SPINT2,CATSPERG
SE_02_058000979 chr19:38316117-38322412 Sample_02_0580 Blood HEL_sgSIK3e4 979 1 156 21 1 27 214 KCNK6,CATSPERG,YIF1B,C19ORF33
SE_02_057600942 chr19:38316144-38321933 Sample_02_0576 Blood HEL_sgLKB1e2 942 1 147 19 1 27 209 KCNK6,CATSPERG,YIF1B,C19ORF33
SE_02_057900890 chr19:38316149-38322389 Sample_02_0579 Blood HEL_sgNeg2 890 1 154 19 1 27 209 KCNK6,CATSPERG,YIF1B,C19ORF33
SE_02_039601749 chr19:38318164-38322203 Sample_02_0396 Skin NHEK-D 1749 1 93 8 0 26 209 KCNK6,C19ORF33,CATSPERG,YIF1B
Genomic distribution of SEs associated with KCNK6
Genome Browser

The strength of the tissue affected by the gene

Expression of KCNK6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)