Gene overview
| Strategies/Algorithm: | overlap | Ensembl ID: | ENSG00000066032 |
| Gene: | CTNNA2 | Gene type: | protein_coding |
| Strand: | + | External links: |
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| Genomic region: | chr2:79185231-80648861 | Genome Browser: |   |
Super-enhancer search result of gene-based
| SE ID | SE Region | Sample ID | Tissue type | Biosample name | SE rank | Element | Common SNP | eQTL | Risk SNP | TFBS | CRISPR Cas9 | Gene |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| SE_02_021000654 | chr2:79702250-79726273 |
Sample_02_0210 | Lung | MRC-5_N_1DPT | 654 | 6 | 763 | 4 | 3 | 19 | 0 | CTNNA2,MIR4264 |
| SE_02_126501451 | chr2:79710672-79726094 |
Sample_02_1265 | Bone | Im-GCT-4072_G34W-repair_WT_D6 | 1451 | 6 | 462 | 3 | 2 | 8 | 0 | CTNNA2,MIR4264 |
| SE_02_157100796 | chr2:79712984-79725350 |
Sample_02_1571 | Fibroblast | Fibroblast cells | 796 | 4 | 383 | 2 | 2 | 7 | 0 | CTNNA2,MIR4264 |
| SE_02_137501028 | chr2:79713292-79725476 |
Sample_02_1375 | Pancreas | Pancreatic_tumor_associated_fibroblasts_B0010A_untreated | 1028 | 8 | 380 | 2 | 1 | 7 | 0 | CTNNA2,MIR4264 |
| SE_02_029700552 | chr2:79723228-79802132 |
Sample_02_0297 | Neuroblastoma | CLB-CAR | 552 | 12 | 2337 | 20 | 9 | 141 | 39 | CTNNA2,MIR4264 |
| SE_02_110900167 | chr2:79737620-79863394 |
Sample_02_1109 | Brain | SK-N-FI | 167 | 55 | 3729 | 23 | 10 | 203 | 95 | CTNNA2,MIR8080 |
| SE_02_031400251 | chr2:79741642-79836968 |
Sample_02_0314 | Neuroblastoma | SK-N-FI | 251 | 8 | 2871 | 22 | 9 | 158 | 39 | CTNNA2,MIR4264 |
| SE_02_031000244 | chr2:79741720-79797018 |
Sample_02_0310 | Neuroblastoma | SJNB8 | 244 | 7 | 1676 | 17 | 6 | 92 | 39 | CTNNA2,MIR4264 |
| SE_02_034100214 | chr2:79741857-79803317 |
Sample_02_0341 | Autonomic ganglia | SH-SY5Y_untreat | 214 | 8 | 1845 | 17 | 6 | 102 | 39 | CTNNA2,MIR4264 |
| SE_02_029600451 | chr2:79773996-79834246 |
Sample_02_0296 | Neuroblastoma | CLB-BER-Lud | 451 | 8 | 1780 | 9 | 4 | 102 | 0 | CTNNA2,MIR4264 |
| SE_02_083800194 | chr2:79830288-79834413 |
Sample_02_0838 | Embryo | hNPCs_WT | 194 | 1 | 97 | 0 | 0 | 18 | 0 | CTNNA2,MIR8080 |
| SE_02_054200040 | chr2:79934662-80092754 |
Sample_02_0542 | Brain | Kelly_ResJQ1 | 40 | 63 | 4720 | 16 | 29 | 497 | 0 | CTNNA2,MIR8080 |
| SE_02_054400047 | chr2:79935110-80092530 |
Sample_02_0544 | Brain | Kelly_ResVeh | 47 | 59 | 4700 | 16 | 28 | 496 | 0 | CTNNA2,MIR8080 |
| SE_02_150000380 | chr2:79935137-79958448 |
Sample_02_1500 | Brain | KELLY_untreat | 380 | 14 | 759 | 2 | 4 | 85 | 0 | CTNNA2,MIR8080 |
| SE_02_031900187 | chr2:79993092-80093013 |
Sample_02_0319 | Neuroblastoma | NB-EBc1 | 187 | 17 | 2813 | 11 | 10 | 295 | 0 | CTNNA2,LRRTM1 |
| SE_02_030000169 | chr2:79994108-80093191 |
Sample_02_0300 | Neuroblastoma | CLB-PE | 169 | 13 | 2792 | 11 | 10 | 295 | 0 | CTNNA2,LRRTM1 |
| SE_02_049401168 | chr2:80033841-80060787 |
Sample_02_0494 | Islets | differentiated hESCs Late pancreatic progenitor cells | 1168 | 11 | 763 | 1 | 4 | 90 | 0 | CTNNA2,MIR8080,LRRTM1 |
| SE_02_049500788 | chr2:80033939-80051877 |
Sample_02_0495 | Islets | differentiated hESCs Early LSD1 inhibition PP2 | 788 | 6 | 490 | 1 | 0 | 65 | 0 | CTNNA2,MIR8080,LRRTM1 |
| SE_02_150000186 | chr2:80034666-80092959 |
Sample_02_1500 | Brain | KELLY_untreat | 186 | 19 | 1629 | 10 | 5 | 182 | 0 | CTNNA2,MIR8080 |
| SE_02_034100168 | chr2:80072004-80153401 |
Sample_02_0341 | Autonomic ganglia | SH-SY5Y_untreat | 168 | 11 | 2577 | 66 | 12 | 222 | 0 | CTNNA2,LRRTM1 |
| SE_02_075400305 | chr2:80189594-80205951 |
Sample_02_0754 | Embryo | ES-derived progenitors Pancreatic Progenitors 1 WT | 305 | 5 | 472 | 9 | 2 | 33 | 0 | CTNNA2,LRRTM1 |
| SE_02_075700519 | chr2:80190560-80207015 |
Sample_02_0757 | Embryo | ES-derived progenitors_FOXA2 -/- | 519 | 4 | 457 | 9 | 2 | 39 | 0 | CTNNA2,LRRTM1 |
| SE_02_150000475 | chr2:80288781-80306017 |
Sample_02_1500 | Brain | KELLY_untreat | 475 | 2 | 436 | 5 | 1 | 174 | 632 | CTNNA2,LRRTM1 |
| SE_02_081700393 | chr2:80291869-80311657 |
Sample_02_0817 | Ovary | Epithelial ovarian cancer | 393 | 9 | 510 | 6 | 1 | 218 | 570 | CTNNA2,LRRTM1 |
| SE_02_054200125 | chr2:80321984-80401342 |
Sample_02_0542 | Brain | Kelly_ResJQ1 | 125 | 24 | 2284 | 82 | 4 | 317 | 27 | CTNNA2,LRRTM1 |
| SE_02_150000138 | chr2:80355229-80400792 |
Sample_02_1500 | Brain | KELLY_untreat | 138 | 20 | 1322 | 43 | 1 | 169 | 27 | CTNNA2 |
| SE_02_106400552 | chr2:80360557-80375946 |
Sample_02_1064 | Brain | CLB-GA-Dinaciclib_8h | 552 | 4 | 412 | 10 | 0 | 52 | 0 | CTNNA2 |
| SE_02_078400071 | chr2:80457643-80536347 |
Sample_02_0784 | Blood | OSU-CLL | 71 | 27 | 2260 | 8 | 4 | 208 | 0 | CTNNA2 |
| SE_02_150600268 | chr2:80457705-80499186 |
Sample_02_1506 | Brain | SHEP with tetracycline inducible MYC_DOX_6HR | 268 | 11 | 1174 | 6 | 2 | 111 | 0 | CTNNA2 |
| SE_02_142900062 | chr2:80459562-80544943 |
Sample_02_1429 | Blood | GM12878_WT | 62 | 22 | 2510 | 7 | 6 | 218 | 16 | CTNNA2 |
| SE_02_150500260 | chr2:80459703-80499198 |
Sample_02_1505 | Brain | SHEP with tetracycline inducible MYC_DOX_2HR | 260 | 9 | 1115 | 5 | 2 | 107 | 0 | CTNNA2 |
| SE_02_021000712 | chr2:80472500-80497777 |
Sample_02_0210 | Lung | MRC-5_N_1DPT | 712 | 5 | 693 | 1 | 2 | 79 | 0 | CTNNA2,LRRTM1 |
| SE_02_122300354 | chr2:80524476-80535996 |
Sample_02_1223 | Bone marrow | KMS28BM | 354 | 2 | 376 | 2 | 2 | 26 | 0 | CTNNA2 |
| SE_02_128100103 | chr2:80547877-80566913 |
Sample_02_1281 | Lung | NCI-H1048_p8-15 | 103 | 13 | 610 | 3 | 1 | 61 | 56 | CTNNA2 |
Genomic distribution of SEs associated with CTNNA2