Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000245694
Gene: CRNDE Gene type: lncRNA
Strand: - External links:
Genomic region: chr16:54845189-54929189 Genome Browser:

Super-enhancer search result of gene-based

SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_089700972 chr16:54890024-54938543 Sample_02_0897 Heart left ventricle_LV1325 972 22 1254 58 0 432 1171 CRNDE,IRX5
SE_02_090500396 chr16:54890109-54941608 Sample_02_0905 Heart left ventricle_DCM_LV1033 396 10 1338 62 0 459 1171 CRNDE,IRX5
SE_02_044400064 chr16:54909450-54948448 Sample_02_0444 Bone osteosarcoma tumor P10 64 22 999 41 0 442 1171 CRNDE,IRX5
SE_02_044600454 chr16:54912703-54945316 Sample_02_0446 Bone osteosarcoma tumor P2 454 13 839 38 0 412 1171 CRNDE,IRX5
SE_02_091700568 chr16:54912718-54940868 Sample_02_0917 Heart left ventricle_DCM_LV1433 568 12 709 30 0 396 1171 CRNDE,IRX5
SE_02_091301098 chr16:54912752-54941349 Sample_02_0913 Heart left ventricle_DCM_LV1304 1098 7 724 31 0 396 1171 CRNDE,IRX5
SE_02_044500520 chr16:54913320-54944847 Sample_02_0445 Lung lung metastasis from primary osteosarcoma tumor M10 520 11 813 38 0 412 1171 CRNDE,IRX5
SE_02_091001074 chr16:54913418-54940924 Sample_02_0910 Heart left ventricle_DCM_LV1275 1074 10 693 29 0 396 1171 CRNDE,IRX5
SE_02_042000217 chr16:54915539-54936794 Sample_02_0420 Pectoralis major muscle LHCN-M2_dox_6h 217 4 534 21 0 355 1171 CRNDE,IRX5
SE_02_111100096 chr16:54915663-54940919 Sample_02_1111 Other HGrC1_SMAD2/3KO 96 6 640 24 0 394 1171 CRNDE,IRX5
SE_02_103500066 chr16:54916415-54956793 Sample_02_1035 Mammary gland HCC70_Vehicle 66 12 1059 45 0 468 1171 CRNDE,IRX5
SE_02_044300293 chr16:54917366-54937245 Sample_02_0443 Bone MG63 293 8 476 21 0 360 1171 CRNDE,IRX5
SE_02_139200493 chr16:54917957-54944112 Sample_02_1392 Peripheral blood Mac-2A_ALK- 493 5 661 30 0 409 1171 CRNDE,IRX5
SE_02_022400122 chr16:54918234-54933152 Sample_02_0224 Haematopoietic and lymphoid tissue P12-ICHIKAWA 122 1 359 15 0 260 903 CRNDE,IRX5
SE_02_090801354 chr16:54918308-54938296 Sample_02_0908 Heart left ventricle_DCM_LV1262 1354 8 484 20 0 364 1171 CRNDE,IRX5
SE_00_005200512 chr16:54918399-54938451 Sample_00_0052 Heart left ventricle 3y 512 9 486 20 0 366 1171 CRNDE,IRX5
SE_02_089801156 chr16:54918425-54938661 Sample_02_0898 Heart left ventricle_LV1356 1156 12 492 20 0 367 1171 CRNDE,IRX5
SE_02_091800761 chr16:54918555-54937984 Sample_02_0918 Heart left ventricle_DCM_LV1437 761 10 463 19 0 363 1171 CRNDE,IRX5
SE_02_090200559 chr16:54918592-54939227 Sample_02_0902 Heart left ventricle_LV1558 559 5 500 20 0 377 1171 CRNDE,IRX5
SE_02_090401337 chr16:54918657-54938568 Sample_02_0904 Heart left ventricle_DCM_LV1028 1337 8 483 20 0 366 1171 CRNDE,IRX5
SE_02_090701151 chr16:54918723-54940795 Sample_02_0907 Heart left ventricle_DCM_LV1223 1151 6 541 22 0 393 1166 CRNDE,IRX5
SE_01_007200206 chr16:54918867-54941692 Sample_01_0072 Breast epithelium breast-epithelium 206 2 565 24 0 393 1159 CRNDE,IRX5
SE_02_089100793 chr16:54918952-54938498 Sample_02_0891 Heart left ventricle_LV1202 793 8 471 20 0 366 1155 CRNDE,IRX5
SE_01_009800390 chr16:54918989-54941514 Sample_01_0098 Heart left ventricle_51y 390 4 557 23 0 393 1152 CRNDE,IRX5
SE_02_090300671 chr16:54919212-54938685 Sample_02_0903 Heart left ventricle_DCM_LV1009 671 6 470 20 0 367 1140 CRNDE,IRX5
SE_02_022500130 chr16:54919455-54932704 Sample_02_0225 Haematopoietic and lymphoid tissue PF-382 130 1 315 15 0 234 748 CRNDE,IRX5
SE_02_090901089 chr16:54919518-54938965 Sample_02_0909 Heart left ventricle_DCM_LV1264 1089 13 466 20 0 376 1127 CRNDE,IRX5
SE_02_108700100 chr16:54919699-54937863 Sample_02_1087 Mammary gland T47D_shCtrl_shRING1B_0 100 3 428 18 0 362 1127 CRNDE,IRX5
SE_02_111000204 chr16:54919767-54938810 Sample_02_1110 Other HGrC1 204 13 459 19 0 374 1127 CRNDE,IRX5
SE_02_109300112 chr16:54919844-54937690 Sample_02_1093 Mammary gland T47D_shCtrl_shRING1B_24hr 112 5 421 18 0 361 1127 CRNDE,IRX5
SE_02_125300145 chr16:54919900-54957407 Sample_02_1253 Mammary gland CAMA1 ER+/FGFR1-amplified 145 9 980 44 0 466 1127 CRNDE,IRX5
SE_02_138700522 chr16:54920022-54944674 Sample_02_1387 Peripheral blood Mac-1_ALK- 522 9 620 29 0 408 1127 CRNDE,IRX5
SE_02_022100353 chr16:54920148-54932779 Sample_02_0221 Blood CCRF-CEM 353 2 298 14 0 241 760 CRNDE,IRX5
SE_02_040400023 chr16:54920207-54939392 Sample_02_0404 Mammary gland ZR-75-1_2 23 2 465 19 0 377 1123 CRNDE,IRX5
SE_02_005800611 chr16:54920404-54932306 Sample_02_0058 Haematopoietic and lymphoid tissue blood WT/Jurkat-11bp 611 2 286 14 0 226 629 CRNDE,IRX5
SE_02_040300139 chr16:54920442-54938206 Sample_02_0403 Mammary gland T-47D_untreat 139 1 423 18 0 360 1109 CRNDE,IRX5
SE_02_109200108 chr16:54920672-54937800 Sample_02_1092 Mammary gland T47D_shCtrl_24hr 108 4 409 17 0 360 1100 CRNDE,IRX5
SE_02_121500361 chr16:54920733-54929209 Sample_02_1215 Blood Jurkat ZBTB1 KO_Asparagine deprivation 361 5 201 11 0 145 309 CRNDE,IRX5
SE_02_059400441 chr16:54920809-54938640 Sample_02_0594 iPSC-derived neural progenitors 441 2 436 18 0 362 1100 CRNDE,IRX5
SE_02_039400252 chr16:54920825-54937880 Sample_02_0394 Mammary gland T-47D_2 252 2 409 17 0 359 1100 CRNDE,IRX5
SE_02_096200163 chr16:54920874-54937475 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 163 6 400 16 0 356 1100 CRNDE,IRX5
SE_02_111200613 chr16:54920906-54932718 Sample_02_1112 T lymphocyte THP-6 T-ALL 613 2 286 12 0 233 721 CRNDE,IRX5
SE_02_060200596 chr16:54920946-54937388 Sample_02_0602 Mammary gland MCF10A_p63shRNA_DMSO 596 4 400 16 0 355 1100 CRNDE,IRX5
SE_02_060000288 chr16:54920975-54947958 Sample_02_0600 Mammary gland MCF10A_p53shRNA_DMSO 288 6 693 28 0 434 1100 CRNDE,IRX5
SE_02_121700371 chr16:54921005-54929228 Sample_02_1217 Blood Jurkat ZBTB1 KO_ZBTB1_expressing FLAG-ZBTB1_Asparagine deprivation 371 4 199 10 0 144 321 CRNDE,IRX5
SE_02_109000068 chr16:54921012-54937930 Sample_02_1090 Mammary gland T47D_shCtrl_8hr 68 3 406 16 0 358 1100 CRNDE,IRX5
SE_02_096500248 chr16:54921022-54935028 Sample_02_0965 Brain H3.3K27M_HSJ031-C3-Rx_cells 248 6 341 14 0 325 1100 CRNDE,IRX5
SE_02_060100253 chr16:54921027-54947805 Sample_02_0601 Mammary gland MCF10A_p53shRNA_Nutlin3A 253 7 686 28 0 434 1100 CRNDE,IRX5
SE_02_053200252 chr16:54921030-54937394 Sample_02_0532 Mammary gland T47D 252 8 398 16 0 354 1100 CRNDE,IRX5
SE_02_158400789 chr16:54921050-54937419 Sample_02_1584 Brain U87 GBM_Mock 789 8 397 16 0 354 1100 CRNDE,IRX5
SE_02_109100069 chr16:54921062-54937542 Sample_02_1091 Mammary gland T47D_shCtrl_shRING1B_8hr 69 4 398 16 0 357 1100 CRNDE,IRX5
SE_02_108900109 chr16:54921086-54937920 Sample_02_1089 Mammary gland T47D_shCtrl_shRING1B_45min 109 3 404 16 0 358 1100 CRNDE,IRX5
SE_02_108800187 chr16:54921099-54937504 Sample_02_1088 Mammary gland T47D_shCtrl_45min 187 4 396 16 0 357 1100 CRNDE,IRX5
SE_02_080900213 chr16:54921104-54938040 Sample_02_0809 Mammary gland T47D Serum 213 3 408 16 0 358 1100 CRNDE,IRX5
SE_02_108600091 chr16:54921117-54937891 Sample_02_1086 Mammary gland T47D_shCtrl_0hr 91 3 404 16 0 358 1100 CRNDE,IRX5
SE_02_123400408 chr16:54921122-54937664 Sample_02_1234 Mammary gland T47D_Full 408 8 399 16 0 357 1100 CRNDE,IRX5
SE_02_095900050 chr16:54921188-54937545 Sample_02_0959 Brain H3.3K27M_BT245p6_cells 50 4 395 15 0 355 1100 CRNDE,IRX5
SE_02_059600284 chr16:54921190-54937548 Sample_02_0596 Mammary gland MCF10A_ DMSO 284 4 395 15 0 355 1100 CRNDE,IRX5
SE_02_097500064 chr16:54921202-54936792 Sample_02_0975 Brain H3.3K27M-KO_DIPGXIII-c10p5-Rx_R2_cells 64 4 381 15 0 347 1100 CRNDE,IRX5
SE_02_009500167 chr16:54922180-54938734 Sample_02_0095 Mammary gland MDA-MB-468 167 2 406 16 0 318 1100 CRNDE,IRX5
SE_02_060300488 chr16:54922199-54937404 Sample_02_0603 Mammary gland MCF10A_p63shRNA_Nutlin3A 488 6 369 15 0 307 1100 CRNDE,IRX5
SE_01_008000340 chr16:54922263-54939247 Sample_01_0080 Prostate prostate 340 2 417 16 0 326 1100 CRNDE,IRX5
SE_02_074800671 chr16:54922424-54937818 Sample_02_0748 Mammary gland HCC1599_WO 671 4 371 15 0 311 1100 CRNDE,IRX5
SE_02_074900724 chr16:54922459-54937786 Sample_02_0749 Mammary gland HCC1599_GSI 724 6 370 15 0 311 1100 CRNDE,IRX5
SE_02_024600256 chr16:54922547-54937950 Sample_02_0246 Mammary gland MCF-7_estradiol 256 2 368 14 0 307 1100 CRNDE,IRX5
SE_02_003900543 chr16:54922671-54936978 Sample_02_0039 Embryo AFG 543 4 348 13 0 299 1100 CRNDE,IRX5
SE_02_085200201 chr16:54922746-54939104 Sample_02_0852 Mammary gland MCF7L-P 201 5 398 14 0 317 1100 CRNDE,IRX5
SE_02_115900201 chr16:54922746-54939104 Sample_02_1159 Mammary gland MCF7 201 5 398 14 0 317 1100 CRNDE,IRX5
SE_02_053000940 chr16:54922759-54937418 Sample_02_0530 Mammary gland MCF10A 940 4 354 13 0 299 1100 CRNDE,IRX5
SE_00_002100766 chr16:54922803-54938435 Sample_00_0021 Lung lung_3y 766 4 380 14 0 305 1100 CRNDE,IRX5
SE_02_122300470 chr16:54922833-54937481 Sample_02_1223 Bone marrow KMS28BM 470 4 351 13 0 300 1100 CRNDE,IRX5
SE_02_098400087 chr16:54922853-54937379 Sample_02_0984 Brain H3.3K27M-KO_DIPGXIII-C5P5 87 3 351 13 0 299 1100 CRNDE,IRX5
SE_02_062700181 chr16:54922867-54937328 Sample_02_0627 Mammary gland WS8_VEH 181 2 348 13 0 299 1100 CRNDE,IRX5
SE_02_067100119 chr16:54922885-54946867 Sample_02_0671 Mammary gland breast cancer_DSG 119 7 613 25 0 349 1100 CRNDE,IRX5
SE_02_062500191 chr16:54922907-54937279 Sample_02_0625 Mammary gland WS8_4OHT 191 2 346 13 0 299 1100 CRNDE,IRX5
SE_02_096800101 chr16:54922911-54938847 Sample_02_0968 Brain H3.3K27M_pcGBM2p18_cells 101 2 390 14 0 314 1100 CRNDE,IRX5
SE_02_143200710 chr16:54922927-54938665 Sample_02_1432 Bone A673 STAG2 WT 710 5 386 14 0 305 1100 CRNDE,IRX5
SE_02_143300352 chr16:54922927-54939023 Sample_02_1433 Bone A673 STAG2 null 352 4 394 14 0 315 1100 CRNDE,IRX5
SE_02_097600097 chr16:54922929-54937306 Sample_02_0976 Brain H3.3K27M-KO_DIPGXIII-c5p5-Rx_R1_cells_h3k27ac 97 4 347 13 0 297 1100 CRNDE,IRX5
SE_00_004600781 chr16:54922932-54937859 Sample_00_0046 Heart right ventricle_34y 781 5 357 13 0 301 1100 CRNDE,IRX5
SE_02_046300074 chr16:54922944-54939281 Sample_02_0463 Blood OCI-AML3 cells 74 8 403 14 0 316 1100 CRNDE,IRX5
SE_02_055300219 chr16:54922971-54939416 Sample_02_0553 Other HSSY2 shCt 219 4 408 14 0 316 1100 CRNDE,IRX5
SE_02_072600370 chr16:54922994-54937439 Sample_02_0726 Mammary gland MCF10A-YAP5SA_plusDOX 370 5 351 13 0 297 1100 CRNDE,IRX5
SE_02_142000217 chr16:54923013-54933779 Sample_02_1420 Brain DIPG007 217 3 260 9 0 221 1014 CRNDE,IRX5
SE_02_066100409 chr16:54923018-54937359 Sample_02_0661 Mammary gland MCF10DCIS-TetTCF7 409 6 349 13 0 296 1100 CRNDE,IRX5
SE_02_062600213 chr16:54923031-54936932 Sample_02_0626 Mammary gland WS8_E2 213 2 341 12 0 292 1100 CRNDE,IRX5
SE_02_081000288 chr16:54923031-54937978 Sample_02_0810 Mammary gland T47D noSerum 288 5 361 12 0 300 1100 CRNDE,IRX5
SE_02_120200608 chr16:54923038-54936936 Sample_02_1202 Brain GBM38 608 6 341 12 0 292 1100 CRNDE,IRX5
SE_00_005700510 chr16:54923055-54937437 Sample_00_0057 Heart right ventricle 3y 510 8 350 12 0 297 1100 CRNDE,IRX5
SE_02_052700196 chr16:54923144-54946977 Sample_02_0527 Mammary gland MCF7_WT 196 6 613 24 0 346 1100 CRNDE,IRX5
SE_02_151200497 chr16:54924725-54939359 Sample_02_1512 Lung Purified AT2 cells 497 6 355 11 0 311 1073 CRNDE,IRX5
SE_02_153300500 chr16:54924740-54939359 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 500 7 355 11 0 311 1073 CRNDE,IRX5
SE_02_151300732 chr16:54925174-54938584 Sample_02_1513 Lung Transitional AT2->1 cells 732 3 322 11 0 299 1054 CRNDE,IRX5
SE_02_006300726 chr16:54925667-54938730 Sample_02_0063 Skin Keratinocytes 726 2 314 11 0 292 1040 CRNDE,IRX5
SE_02_005600373 chr16:54925766-54939680 Sample_02_0056 Mammary gland HMEC 373 2 339 11 0 301 1040 CRNDE,IRX5
SE_02_096300500 chr16:54925798-54933011 Sample_02_0963 Brain H3.3K27M_Tumor-derived cell-line_G477p6_cells 500 1 167 6 0 178 734 CRNDE,IRX5
SE_02_062400268 chr16:54926004-54935719 Sample_02_0624 Mammary gland TAMR_VEH 268 1 234 9 0 259 1040 CRNDE,IRX5
SE_02_066000726 chr16:54926026-54937567 Sample_02_0660 Mammary gland MCF10DCIS 726 3 272 10 0 285 1040 CRNDE,IRX5
SE_02_142600606 chr16:54926040-54947531 Sample_02_1426 Shoulder fibroblast_341 606 8 549 22 0 351 1040 CRNDE,IRX5
SE_02_062300272 chr16:54926054-54935981 Sample_02_0623 Mammary gland TAMR_E2 272 1 239 9 0 261 1040 CRNDE,IRX5
SE_02_055400425 chr16:54926068-54944219 Sample_02_0554 Other Aska shSSX 425 7 470 20 0 332 1040 CRNDE,IRX5
SE_02_112100395 chr16:54926078-54947870 Sample_02_1121 Neonatal foreskin keratinocytes_Mi2KD 395 9 561 22 0 362 1040 CRNDE,IRX5
SE_02_067000079 chr16:54926106-54938805 Sample_02_0670 Mammary gland breast cancer FA 79 2 309 11 0 297 1040 CRNDE,IRX5
SE_02_044100200 chr16:54926127-54937400 Sample_02_0441 Bone M112 200 4 269 10 0 282 1040 CRNDE,IRX5
SE_01_010700929 chr16:54926133-54948055 Sample_01_0107 Esophagus esophagus squamous epithelium 929 5 566 22 0 362 1040 CRNDE,IRX5
SE_02_097300049 chr16:54926163-54937506 Sample_02_0973 Brain H3.3K27M-KO_BT245-c4p6-Rx_R2_cells 49 1 267 10 0 285 1040 CRNDE,IRX5
SE_02_098100057 chr16:54926163-54937722 Sample_02_0981 Brain H3.3K27M-KO_BT245-C4P6 57 2 271 10 0 286 1040 CRNDE,IRX5
SE_02_064500184 chr16:54926191-54938801 Sample_02_0645 Tracheobronchial epithelial HTBE_H1N1_18h 184 5 306 11 0 295 1040 CRNDE,IRX5
SE_02_105000249 chr16:54926214-54933779 Sample_02_1050 Highly metastatic osteosarcoma MG63-3_DMSO 249 2 175 6 0 205 954 CRNDE,IRX5
SE_02_142500490 chr16:54926281-54937505 Sample_02_1425 Shoulder fibroblast_384 490 4 266 10 0 279 1040 CRNDE,IRX5
SE_02_063500173 chr16:54926290-54938746 Sample_02_0635 Synovial sarcoma HSSYII_Untreated 173 5 302 11 0 285 1040 CRNDE,IRX5
SE_02_043900196 chr16:54926314-54937403 Sample_02_0439 Bone Hu09 196 3 265 10 0 276 1040 CRNDE,IRX5
SE_02_093200094 chr16:54926376-54938728 Sample_02_0932 Embryo H9 WT_1 94 3 300 11 0 280 1040 CRNDE,IRX5
SE_02_044700406 chr16:54926466-54944918 Sample_02_0447 Lung lung metastasis from primary osteosarcoma tumor M2 406 8 476 20 0 318 1040 CRNDE,IRX5
SE_02_093100078 chr16:54926537-54938860 Sample_02_0931 Embryo H9 UTXKO 78 2 300 10 0 283 1040 CRNDE,IRX5
SE_02_141700132 chr16:54926544-54934805 Sample_02_1417 Brain SF7761 132 3 199 7 0 230 1040 CRNDE,IRX5
SE_02_076500519 chr16:54926556-54933858 Sample_02_0765 Prostate 22RV1-DHT-DMSO_6h 519 3 170 5 0 190 962 CRNDE,IRX5
SE_02_127901535 chr16:54926700-54936750 Sample_02_1279 Bone Mesenchymal stem cells 1535 2 240 8 0 260 1040 CRNDE,IRX5
SE_02_060500348 chr16:54926761-54939705 Sample_02_0605 Skin Skin Fibroblast_DMSO 348 2 317 9 0 281 1040 CRNDE,IRX5
SE_02_107700314 chr16:54926769-54935312 Sample_02_1077 Mammary gland MCF7_TET2KO-E2 314 2 202 6 0 236 1040 CRNDE,IRX5
SE_02_117900339 chr16:54926813-54932648 Sample_02_1179 Brain GBM08 339 1 139 4 0 136 647 CRNDE,IRX5
SE_00_001101125 chr16:54926904-54937740 Sample_00_0011 Esophagus esophagus 1125 3 255 8 0 265 1040 CRNDE,IRX5
SE_02_085600435 chr16:54926949-54932535 Sample_02_0856 Glioblastoma Glioblastoma neurosphere cell_HF-3016 435 1 135 4 0 134 617 CRNDE,IRX5
SE_02_097200317 chr16:54926963-54934225 Sample_02_0972 Brain H3.3K27M-KO_BT245-D2p8-Rx_R1_cells 317 1 175 4 0 201 988 CRNDE,IRX5
SE_02_055500247 chr16:54927151-54933177 Sample_02_0555 Other HAP1_WT 247 1 144 4 0 160 778 CRNDE,IRX5
SE_02_085400499 chr16:54927228-54931664 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 499 1 108 3 0 120 468 CRNDE,IRX5
SE_02_027700376 chr16:54927475-54940625 Sample_02_0277 Retina FW18 376 2 326 10 0 273 1040 CRNDE,IRX5
SE_02_039500615 chr16:54927518-54938480 Sample_02_0395 Mammary gland BT-549 615 1 262 9 0 244 1040 CRNDE,IRX5
SE_02_136500671 chr16:54927531-54936941 Sample_02_1365 Pancreas AsPC1-untreated 671 2 226 8 0 230 1040 CRNDE,IRX5
SE_02_098500056 chr16:54927614-54935587 Sample_02_0985 Brain H3.3K27M-DIPGXIII-C14 56 4 191 6 0 208 1040 CRNDE,IRX5
SE_00_002200841 chr16:54927751-54939363 Sample_00_0022 Lung lung_30y 841 4 286 9 0 247 1040 CRNDE,IRX5
SE_02_125400629 chr16:54927784-54932290 Sample_02_1254 Bladder Bladder tumor Basal1 629 1 108 4 0 97 553 CRNDE,IRX5
SE_02_015800466 chr16:54927826-54937452 Sample_02_0158 Brain U87_EGFRvIII_erlotinib 466 2 228 8 0 228 1040 CRNDE,IRX5
SE_02_039600505 chr16:54927858-54939134 Sample_02_0396 Skin NHEK-D 505 3 271 9 0 245 1040 CRNDE,IRX5
SE_02_147000851 chr16:54928022-54937475 Sample_02_1470 Umbilical Vein H441 851 3 219 8 0 227 1040 CRNDE,IRX5
SE_02_114800437 chr16:54928130-54931746 Sample_02_1148 Kidney WT 9-12_control_vehicle 437 1 84 3 0 88 468 CRNDE,IRX5

Genomic distribution of SEs associated with CRNDE

The strength of the tissue affected by the gene


Expression of CRNDE