SEdb 2.0
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  2. Super-enhancer search result of gene-based

Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000011021
Gene: CLCN6 Gene type: protein_coding
Strand: + External links:
Genomic region: chr1:11806096-11848079 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_032700874 chr1:11776820-11808205 Sample_02_0327 Liver hepatocytes_d6 874 4 1008 198 45 155 3509 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_008200518 chr1:11777365-11816018 Sample_01_0082 Right lobe of liver right-lobe-of-liver 518 7 1256 265 50 156 3557 CLCN6,MTHFR,NPPA,AGTRAP,NPPB
SE_02_088601363 chr1:11780576-11808144 Sample_02_0886 Skin foreskin_ p63KLF4 1363 9 862 158 40 151 3159 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_122400934 chr1:11783174-11815012 Sample_02_1224 Bone marrow normal plasma cell 934 12 1024 208 45 148 3033 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_082600563 chr1:11783201-11815736 Sample_02_0826 Stomach gastric tumor 563 17 1043 211 45 149 3046 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_104800958 chr1:11783305-11814969 Sample_02_1048 Peripheral blood CD4+ cell_UNTREATED 958 9 1019 207 45 148 3033 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_009000214 chr1:11783714-11808078 Sample_01_0090 Lung upper-lobe-of-left-lung 214 4 768 138 38 148 3033 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_038100132 chr1:11783850-11808373 Sample_02_0381 Heart purified cardiomyocyte WT 132 1 774 137 38 148 3033 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_103601584 chr1:11783855-11821565 Sample_02_1036 Mammary gland HCC70_XY018 1584 18 1205 246 49 158 3238 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_008400568 chr1:11783864-11816254 Sample_01_0084 Spleen spleen 568 6 1041 208 44 151 3101 CLCN6,MTHFR,NPPA,AGTRAP,NPPB
SE_02_081700636 chr1:11783900-11814803 Sample_02_0817 Ovary Epithelial ovarian cancer 636 7 990 200 44 148 3033 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_111600029 chr1:11783934-11809045 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 29 10 793 141 38 148 3033 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_038200259 chr1:11783989-11808840 Sample_02_0382 Heart purified cardiomyocyte G296S mutants 259 2 786 138 38 148 3030 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_113000085 chr1:11784041-11808232 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 85 9 768 135 38 148 3021 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007200317 chr1:11784077-11807629 Sample_01_0072 Breast epithelium breast-epithelium 317 5 748 132 38 148 3016 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_007900556 chr1:11784078-11807877 Sample_01_0079 Peyers patch Peyers-patch 556 3 760 135 38 148 3016 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_110700421 chr1:11784093-11807641 Sample_02_1107 Brain SK-N-AS 421 11 748 132 38 148 3015 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007300420 chr1:11784133-11807507 Sample_01_0073 Coronary artery coronary-artery 420 4 745 132 38 148 3008 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_008700265 chr1:11784140-11807665 Sample_01_0087 Thyroid gland thyroid-gland 265 3 748 132 38 148 3007 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_009200276 chr1:11784144-11807529 Sample_01_0092 Vagina vagina 276 5 745 132 38 148 3006 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_090600275 chr1:11784148-11807657 Sample_02_0906 Heart left ventricle_DCM_LV1072 275 7 748 132 38 148 3005 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_096700203 chr1:11784151-11812981 Sample_02_0967 Brain H3.3K27M_JN57 203 8 936 180 43 148 3005 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_104901239 chr1:11784171-11811256 Sample_02_1049 Peripheral blood CD4+ cell_ROMI 1239 17 863 161 41 148 3001 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_008800244 chr1:11784181-11807717 Sample_01_0088 Tibial nerve tibial-nerve 244 2 751 132 38 148 2999 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_006900257 chr1:11784188-11807911 Sample_01_0069 Adrenal gland adrenal-gland 257 6 759 134 38 148 2998 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_007000463 chr1:11784193-11807646 Sample_01_0070 Ascending aorta ascending-aorta 463 3 747 131 38 148 2994 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_008100175 chr1:11784194-11808038 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 175 1 761 134 38 148 2994 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_074700086 chr1:11784209-11821631 Sample_02_0747 Embryo ES derived ventricular cardiomyocyte_day80 86 7 1203 244 49 158 3197 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_04_000100059 chr1:11784211-11809351 Sample_04_0001 Blood heat shocked K562 59 2 801 142 39 148 2992 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_044600528 chr1:11784214-11807679 Sample_02_0446 Bone osteosarcoma tumor P2 528 3 748 131 38 148 2992 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007600626 chr1:11784231-11808109 Sample_01_0076 Gastrocnemius medialis gastrocnemius-medialis 626 2 763 134 38 148 2987 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_154100358 chr1:11784231-11808437 Sample_02_1541 Nasopharyngeal HNE1 358 13 773 134 38 148 2987 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007700418 chr1:11784233-11807882 Sample_01_0077 Gastroesophageal sphincter gastroesophageal-sphincter 418 4 757 134 38 148 2986 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_103501749 chr1:11784242-11821080 Sample_02_1035 Mammary gland HCC70_Vehicle 1749 15 1183 242 49 156 3190 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_009800066 chr1:11784255-11808182 Sample_01_0098 Heart left ventricle_51y 66 1 764 134 38 148 2980 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_081600375 chr1:11784259-11815476 Sample_02_0816 Ovary Clear cell ovarian cancer 375 10 1008 203 44 149 2980 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_127300943 chr1:11784278-11807692 Sample_02_1273 Cervix HeLa 943 4 746 131 38 148 2976 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007500303 chr1:11784293-11807663 Sample_01_0075 Esophagus squamous epithelium esophagus-squamous-epithelium 303 5 744 130 38 148 2971 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_089600176 chr1:11784318-11807465 Sample_02_0896 Heart left ventricle_LV1294 176 7 740 130 38 148 2964 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_088700148 chr1:11784331-11807756 Sample_02_0887 Heart left ventricle_LV1121 148 5 750 131 38 148 2964 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_00_004600092 chr1:11784334-11807067 Sample_00_0046 Heart right ventricle_34y 92 16 725 130 38 144 2919 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_089200260 chr1:11784335-11808213 Sample_02_0892 Heart left ventricle_LV1215 260 6 763 133 38 148 2962 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_04_000200078 chr1:11784342-11809779 Sample_04_0002 Blood cold shocked K562 78 1 815 147 40 148 2960 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_007400527 chr1:11784347-11807974 Sample_01_0074 Esophagus muscularis mucosa esophagus-muscularis-mucosa 527 3 756 133 38 148 2956 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_119600966 chr1:11784359-11814495 Sample_02_1196 Brain GBM32 966 9 980 197 44 148 2953 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_008500348 chr1:11784406-11808194 Sample_01_0085 Stomach stomach 348 3 761 131 38 148 2943 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_090800604 chr1:11784413-11807468 Sample_02_0908 Heart left ventricle_DCM_LV1262 604 8 738 128 38 148 2939 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_091600420 chr1:11784417-11807057 Sample_02_0916 Heart left ventricle_DCM_LV1392 420 7 723 128 38 144 2893 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090900434 chr1:11784421-11807175 Sample_02_0909 Heart left ventricle_DCM_LV1264 434 11 727 128 38 146 2909 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_088900214 chr1:11784431-11807825 Sample_02_0889 Heart left ventricle_LV1183 214 4 753 131 38 148 2933 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_008900501 chr1:11784435-11807922 Sample_01_0089 Transverse colon transverse-colon 501 3 754 131 38 148 2932 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_089100192 chr1:11784437-11807602 Sample_02_0891 Heart left ventricle_LV1202 192 7 742 128 38 148 2932 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_088800195 chr1:11784491-11807732 Sample_02_0888 Heart left ventricle_LV1160 195 8 744 128 38 148 2917 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_118500527 chr1:11784501-11807676 Sample_02_1185 Brain GBM14 527 5 740 127 38 148 2911 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_092400160 chr1:11784506-11807221 Sample_02_0924 Heart fetal heart_PCW10_12569 160 8 727 127 38 146 2889 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090300264 chr1:11784506-11807501 Sample_02_0903 Heart left ventricle_DCM_LV1009 264 7 737 127 38 148 2911 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090400154 chr1:11784510-11807839 Sample_02_0904 Heart left ventricle_DCM_LV1028 154 5 752 130 38 148 2909 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_010400171 chr1:11784517-11815734 Sample_01_0104 Lung upper lobe of left lung 171 9 1014 201 44 149 2921 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_092200237 chr1:11784520-11807497 Sample_02_0922 Heart fetal heart_PCW10_12434 237 3 736 127 38 148 2909 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_007800299 chr1:11784525-11808047 Sample_01_0078 Heart left ventricle heart-left-ventricle 299 2 754 130 38 148 2909 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_008300506 chr1:11784527-11807680 Sample_01_0083 Sigmoid colon sigmoid-colon 506 3 740 127 38 148 2908 CLCN6,MTHFR,NPPA,AGTRAP
SE_01_010700638 chr1:11784530-11807807 Sample_01_0107 Esophagus esophagus squamous epithelium 638 6 748 129 38 148 2906 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_089800268 chr1:11784540-11807976 Sample_02_0898 Heart left ventricle_LV1356 268 7 751 130 38 148 2905 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_043100104 chr1:11784540-11815975 Sample_02_0431 Peripheral blood CD34+HSPC-derived-erythroid-precursors 104 4 1019 201 44 151 2949 CLCN6,MTHFR,NPPA,AGTRAP,NPPB
SE_02_157300155 chr1:11784543-11815931 Sample_02_1573 Endothelial Undifferentiated Pleomorphic Sarcoma 155 9 1018 201 44 151 2944 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_089900149 chr1:11784555-11807648 Sample_02_0899 Heart left ventricle_LV1400 149 11 739 127 38 148 2903 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_00_005500391 chr1:11784558-11815781 Sample_00_0055 Spleen spleen 34y 391 11 1014 201 44 149 2922 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_091700315 chr1:11784580-11807715 Sample_02_0917 Heart left ventricle_DCM_LV1433 315 9 742 128 38 148 2897 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_092300218 chr1:11784582-11807662 Sample_02_0923 Heart fetal heart_PCW10_12522 218 7 738 127 38 148 2897 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_119100778 chr1:11784585-11815943 Sample_02_1191 Brain GBM25 778 7 1017 201 44 151 2938 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_091200423 chr1:11784590-11807386 Sample_02_0912 Heart left ventricle_DCM_LV1300 423 8 732 127 38 148 2893 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090500318 chr1:11784590-11807545 Sample_02_0905 Heart left ventricle_DCM_LV1033 318 7 736 127 38 148 2894 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090000241 chr1:11784592-11807796 Sample_02_0900 Heart left ventricle_LV1452 241 10 746 129 38 148 2894 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_098700070 chr1:11784604-11808604 Sample_02_0987 Blood K562_Control_1 70 8 767 131 38 148 2894 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_091300462 chr1:11784607-11807388 Sample_02_0913 Heart left ventricle_DCM_LV1304 462 5 732 127 38 148 2893 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_009100739 chr1:11784624-11807438 Sample_01_0091 Uterus uterus 739 3 734 127 38 148 2890 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_064300650 chr1:11784626-11809224 Sample_02_0643 Mammary gland MDA-MB-436 650 11 787 138 39 148 2890 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_009400519 chr1:11784642-11808014 Sample_01_0094 Gastrocnemius medialis gastrocnemius medialis_54y 519 6 750 130 38 148 2887 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_089000144 chr1:11784645-11807520 Sample_02_0890 Heart left ventricle_LV1200 144 7 734 127 38 148 2884 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_037200179 chr1:11784659-11807025 Sample_02_0372 Skeletal muscle RMS008 179 3 718 127 38 144 2835 CLCN6,MTHFR,NPPA,AGTRAP
SE_00_005600440 chr1:11784661-11815879 Sample_00_0056 Sigmoid colon sigmoid colon 3y 440 7 1015 201 44 149 2912 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_156001426 chr1:11784695-11807228 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 1426 5 721 126 38 146 2851 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_092000253 chr1:11784695-11807318 Sample_02_0920 Heart left ventricle_DCM_LV1535 253 6 725 126 38 148 2865 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090200155 chr1:11784702-11807722 Sample_02_0902 Heart left ventricle_LV1558 155 5 738 127 38 148 2869 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_001600154 chr1:11784725-11808313 Sample_02_0016 Blood erythroblasts 154 1 755 129 38 148 2865 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_091000494 chr1:11784737-11807673 Sample_02_0910 Heart left ventricle_DCM_LV1275 494 8 733 126 38 148 2862 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_090100331 chr1:11784740-11807658 Sample_02_0901 Heart left ventricle_LV1471 331 9 733 126 38 148 2860 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_081800621 chr1:11784754-11807196 Sample_02_0818 Ovary High-grade serous ovarian cancer 621 5 718 126 38 146 2833 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_036700112 chr1:11784763-11807839 Sample_02_0367 Skeletal muscle NS129 112 4 745 129 38 148 2857 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_131700396 chr1:11784773-11815640 Sample_02_1317 Brain hMGLs_SORL1-KO 396 5 1003 198 44 149 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_146900663 chr1:11784793-11806754 Sample_02_1469 Umbilical Vein HUVEC 663 7 706 123 37 143 2794 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_089700379 chr1:11784815-11807354 Sample_02_0897 Heart left ventricle_LV1325 379 7 723 125 38 148 2850 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_119700811 chr1:11784839-11815794 Sample_02_1197 Brain GBM33 811 9 1004 199 44 149 2877 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_089300192 chr1:11784842-11807689 Sample_02_0893 Heart left ventricle_LV1226 192 6 730 126 38 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_036800209 chr1:11784847-11807643 Sample_02_0368 Skeletal muscle NS134 209 3 728 125 38 148 2856 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_111100521 chr1:11784865-11807612 Sample_02_1111 Other HGrC1_SMAD2/3KO 521 10 728 125 38 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_109900061 chr1:11784883-11809718 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 61 7 796 142 40 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_009700300 chr1:11784886-11809733 Sample_01_0097 Gastrocnemius medialis gastrocnemius medialis_53y 300 8 796 142 40 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_087500771 chr1:11784892-11809514 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 771 10 789 139 39 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_009300614 chr1:11784930-11807411 Sample_01_0093 Aorta ascending aorta 614 7 722 125 38 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_117400519 chr1:11784930-11815822 Sample_02_1174 Brain GBM02 519 9 1005 199 44 149 2882 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_149200924 chr1:11784942-11809422 Sample_02_1492 Peripheral blood CD34+ derived peripheral blood-derived mast cells 924 11 782 136 39 148 2856 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_092500177 chr1:11784953-11807726 Sample_02_0925 Heart fetal heart_PCW17_12570 177 4 731 126 38 148 2855 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_158000524 chr1:11784963-11807471 Sample_02_1580 Renal 786-O 524 7 723 125 38 148 2854 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_058600731 chr1:11784987-11807472 Sample_02_0586 Chordal patient-derived chordoma MGH_4 731 5 722 125 38 148 2851 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_129900466 chr1:11784987-11814662 Sample_02_1299 Liver liver 466 15 964 192 44 148 2851 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_146800073 chr1:11785006-11812201 Sample_02_1468 Blood HUDEP-2_WT 73 2 888 163 41 148 2841 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_081901053 chr1:11785058-11807527 Sample_02_0819 Ovary Mucinous ovarian cancer 1053 5 722 124 38 148 2822 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_103300119 chr1:11785064-11809093 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 119 3 771 134 38 148 2814 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_109500096 chr1:11785096-11808079 Sample_02_1095 Blood CD34 Erythroid cells_Don002 96 5 739 127 38 148 2806 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_133200511 chr1:11785180-11815843 Sample_02_1332 Blood Monomac6_CTRL 511 9 997 195 44 148 2815 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_146700062 chr1:11785211-11811916 Sample_02_1467 Blood HUDEP-2_LRFKO 62 2 868 159 41 147 2779 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_109600095 chr1:11785257-11807938 Sample_02_1096 Blood CD34 Erythroid cells_Don003 95 4 726 124 38 147 2769 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_02_146600071 chr1:11785316-11809404 Sample_02_1466 Blood HUDEP-2_BCL11AKO 71 2 766 132 39 147 2753 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_02_066900562 chr1:11785441-11812203 Sample_02_0669 Prostate prostate cancer_DSG 562 7 870 158 41 147 2717 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPB,NPPA-AS1
SE_01_002300210 chr1:11785964-11807982 Sample_01_0023 Embryo cardiac-muscle-cell 210 2 703 120 38 147 2661 CLCN6,MTHFR,NPPA,AGTRAP
SE_02_090700406 chr1:11786037-11807497 Sample_02_0907 Heart left ventricle_DCM_LV1223 406 10 687 117 38 147 2646 MTHFR,C1ORF167,CLCN6,LOC102724659,AGTRAP,NPPA,NPPA-AS1
SE_01_003900022 chr1:11786079-11809686 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 22 5 759 134 40 146 2646 CLCN6,MTHFR,NPPA,AGTRAP,NPPB
SE_01_008600775 chr1:11786311-11807791 Sample_01_0086 Thoracic aorta thoracic-aorta 775 3 693 116 37 146 2613 CLCN6,MTHFR,NPPA
SE_02_019400228 chr1:11786335-11807725 Sample_02_0194 Kidney Patient_x750T 228 3 688 115 37 146 2610 CLCN6,MTHFR,NPPA
SE_02_019300378 chr1:11786379-11808034 Sample_02_0193 Kidney Patient_x750N 378 2 696 117 37 146 2608 CLCN6,MTHFR,NPPA
SE_02_093500423 chr1:11786408-11807173 Sample_02_0935 Retinal Pigmented Epithelial RPE188_Con 423 5 666 114 37 143 2579 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_093700815 chr1:11786618-11807480 Sample_02_0937 Retinal Pigmented Epithelial RPE190_Con 815 5 674 114 37 146 2583 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_089400161 chr1:11786647-11807406 Sample_02_0894 Heart left ventricle_LV1248 161 7 673 114 37 146 2580 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_036600454 chr1:11786649-11807383 Sample_02_0366 Skeletal muscle NCI0082 454 2 670 114 37 146 2575 CLCN6,MTHFR,NPPA
SE_02_142800798 chr1:11786822-11807344 Sample_02_1428 Shoulder fibroblast_316 798 5 662 113 37 146 2545 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_076000638 chr1:11786912-11808132 Sample_02_0760 Ovary BIN-67_SMARCA4 638 5 688 116 37 146 2546 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_01_008000492 chr1:11786922-11808345 Sample_01_0080 Prostate prostate 492 3 694 116 37 146 2546 CLCN6,MTHFR,NPPA
SE_02_142700796 chr1:11786938-11807250 Sample_02_1427 Shoulder fibroblast_343 796 5 660 113 37 144 2523 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_01_003700467 chr1:11786958-11807947 Sample_01_0037 Liver hepatocyte 467 3 682 116 37 146 2541 CLCN6,MTHFR,NPPA
SE_01_003600586 chr1:11786983-11807818 Sample_01_0036 Cervix HeLa-S3 586 3 679 115 37 146 2536 CLCN6,MTHFR,NPPA
SE_02_061001351 chr1:11787001-11807570 Sample_02_0610 Liposarcoma MLS 1765-92 1351 5 667 113 37 146 2532 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_067201123 chr1:11787156-11815560 Sample_02_0672 Endometrium endometrium cancer_DSG 1123 7 938 186 43 147 2500 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_094901190 chr1:11787334-11808656 Sample_02_0949 Umbilical artery HUAEC_WT 1190 8 690 115 37 146 2453 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_01_010100934 chr1:11787346-11807575 Sample_01_0101 Pancreas pancreas_54y 934 3 658 111 37 146 2451 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPA,NPPA-AS1
SE_02_132100919 chr1:11787371-11822326 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 919 7 1133 228 48 156 2652 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_131500565 chr1:11787577-11815971 Sample_02_1315 Brain hMGLs_INPP5D SNP 565 12 933 183 42 149 2442 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_158300968 chr1:11787761-11822773 Sample_02_1583 Fetal lung IMR90_empty_GM 968 12 1128 226 47 157 2600 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_093000929 chr1:11787802-11822781 Sample_02_0930 Mid-gestation placenta trophoblast__SynT 929 14 1128 226 47 160 2592 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_010000521 chr1:11788407-11816344 Sample_02_0100 Peripheral blood Macrophages_GM-CSF_72h 521 3 911 179 40 146 2283 CLCN6,MTHFR,NPPA,NPPB
SE_01_002400544 chr1:11788914-11822428 Sample_01_0024 Blood CD14-positive-monocyte 544 5 1077 218 45 153 2304 CLCN6,MTHFR,NPPA,NPPB
SE_02_131600517 chr1:11789100-11816090 Sample_02_1316 Brain hMGLs_TREM2-R47H 517 4 882 174 40 144 2115 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_131300636 chr1:11789388-11815722 Sample_02_1313 Brain hMGLs_CD33_SNP 636 6 858 174 40 142 1994 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_146001367 chr1:11789524-11814873 Sample_02_1460 Blood Mutz-3 1367 4 829 168 40 141 1960 MTHFR,C1ORF167,CLCN6,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_131800529 chr1:11789652-11815928 Sample_02_1318 Brain hMGLs_SORL1-A528T 529 9 856 173 40 144 1980 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_131200487 chr1:11789656-11815642 Sample_02_1312 Brain hMGLs_WT 487 4 848 172 40 142 1940 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_139400199 chr1:11789918-11808174 Sample_02_1394 Lymph node anaplastic large cell lymphoma cells_ALK+#208 199 4 588 102 34 139 1877 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPA,NPPA-AS1
SE_02_085400786 chr1:11790476-11807509 Sample_02_0854 Glioblastoma Glioblastoma neurosphere cell_HF-2354 786 3 551 98 33 139 1765 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPA,NPPA-AS1
SE_02_092900730 chr1:11790521-11822217 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 730 10 1026 215 44 149 1962 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_075000645 chr1:11792474-11817477 Sample_02_0750 Lymphoma Rec-1_GSI 645 12 789 171 34 132 1639 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_057600927 chr1:11796337-11808118 Sample_02_0576 Blood HEL_sgLKB1e2 927 3 340 77 20 106 998 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPA,NPPA-AS1
SE_00_002100606 chr1:11799932-11807803 Sample_00_0021 Lung lung_3y 606 1 234 45 16 103 937 CLCN6,MTHFR,NPPA
SE_00_000301365 chr1:11801797-11807763 Sample_00_0003 Adrenal gland adrenal-gland_97d 1365 1 160 36 11 77 739 CLCN6,MTHFR,NPPA
SE_00_000500646 chr1:11802146-11816798 Sample_00_0005 Blood B-cell 646 3 442 110 16 81 889 CLCN6,MTHFR,NPPA,NPPB
SE_00_004200725 chr1:11802588-11807343 Sample_00_0042 Stomach stomach_30y 725 1 115 25 8 77 732 CLCN6,MTHFR,NPPA
SE_02_037600424 chr1:11802768-11813502 Sample_02_0376 Skeletal muscle RMS237 424 2 328 79 12 75 726 CLCN6,MTHFR,NPPA,NPPB
SE_02_020700411 chr1:11803602-11809020 Sample_02_0207 Stomach FU97 411 2 138 28 6 71 550 CLCN6,MTHFR,NPPA,NPPB
SE_02_082700662 chr1:11803868-11809600 Sample_02_0827 Stomach normal gastric 662 3 158 36 8 70 491 MTHFR,CLCN6,C1ORF167,LOC102724659,NPPB,NPPA,NPPA-AS1
SE_02_028500378 chr1:11838549-11845152 Sample_02_0285 Liver HuH7_untreat 378 1 241 38 7 16 721 CLCN6,MTHFR,NPPA,NPPB
SE_01_008100309 chr1:11838893-11894213 Sample_01_0081 Right atrium auricular region right-atrium-auricular-region 309 5 1752 244 27 93 1279 NPPB,NPPA,CLCN6,MTHFR,KIAA2013,PLOD1
SE_02_092400863 chr1:11839808-11857464 Sample_02_0924 Heart fetal heart_PCW10_12569 863 4 558 87 13 51 983 NPPA,NPPA-AS1,NPPB,CLCN6,MTHFR
SE_02_020700493 chr1:11839851-11845204 Sample_02_0207 Stomach FU97 493 2 189 27 5 7 653 CLCN6,MTHFR,NPPA,NPPB
Genomic distribution of SEs associated with CLCN6
Genome Browser

The strength of the tissue affected by the gene

Expression of CLCN6

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)