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Super-enhancer overview

SE ID: SE_02_156001426
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:11784695-11807228
Size: 22533
Super-enhancer rank 1426
Number of SE elements: 5
ChIP density(Case|Control): 11221.434|2395.2579
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CLCN6 ;
ROSE Overlap MTHFR ; C1orf167 ; CLCN6 ;
ROSE Proximal LOC102724659 ; AGTRAP ; NPPA ; NPPA-AS1 ;
ROSE Closest CLCN6 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LOC102724659 ; CLCN6 ; MTHFR ; NPPB ; C1orf167 ; NPPA ; NPPA-AS1 ; AGTRAP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001426 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers