SEdb 2.0
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Gene overview

Strategies/Algorithm: overlap Ensembl ID: ENSG00000169515
Gene: CCDC8 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:46410329-46413564 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_143200272 chr19:46338830-46448115 Sample_02_1432 Bone A673 STAG2 WT 272 40 3274 342 13 225 3031 PPP5C,HIF3A,CCDC8,PNMAL2,PNMAL1
SE_02_101700447 chr19:46338946-46417280 Sample_02_1017 Embryo H9_Mesendoderm 24h_Hydroxyurea 447 17 2338 173 6 199 3031 PPP5C,HIF3A,CCDC8
SE_02_143300239 chr19:46339325-46448325 Sample_02_1433 Bone A673 STAG2 null 239 38 3264 342 13 225 3031 HIF3A,PPP5C,CCDC8,PNMAL2,PNMAL1
SE_02_104700395 chr19:46339511-46429143 Sample_02_1047 Peripheral blood CD4+ cells_CTCL1181 395 32 2693 250 8 225 3012 HIF3A,PPP5C,CCDC8,PNMAL1
SE_02_155200446 chr19:46349683-46426769 Sample_02_1552 HMSCs hMSC ATCC SCRC-4000 446 19 2338 228 6 147 2195 PPP5C,CCDC8,HIF3A,PNMAL1
SE_02_046200165 chr19:46365405-46426740 Sample_02_0462 Lung NCI-H2171 cells 165 21 1935 195 5 119 2072 PPP5C,CCDC8,PNMAL1
SE_02_124900316 chr19:46367560-46430367 Sample_02_1249 Bone marrow RS4_11_DMSO_4h 316 27 1966 209 6 140 2072 PPP5C,CCDC8,PNMAL1
SE_02_039601006 chr19:46370275-46429223 Sample_02_0396 Skin NHEK-D 1006 14 1855 199 6 140 2072 CCDC8,PPP5C,PNMAL1
SE_02_028400446 chr19:46371100-46431036 Sample_02_0284 Pelvis patient 119 446 14 1889 201 7 140 2072 CCDC8,PPP5C,PNMAL1
SE_01_007200849 chr19:46371244-46429308 Sample_01_0072 Breast epithelium breast-epithelium 849 12 1828 196 6 140 2072 CCDC8,PPP5C,PNMAL1
SE_01_008600231 chr19:46371398-46490622 Sample_01_0086 Thoracic aorta thoracic-aorta 231 15 3714 458 15 169 2934 CCDC8,PPP5C,PNMAL1,PNMAL2
SE_02_061400104 chr19:46371484-46429202 Sample_02_0614 Liposarcoma MLPS_T2 104 19 1821 194 5 140 2072 PPP5C,CCDC8,PNMAL1
SE_02_125200368 chr19:46371485-46431978 Sample_02_1252 Bone marrow RS4_11_DMSO_10h 368 19 1917 206 6 140 2072 PPP5C,CCDC8,PNMAL1
SE_02_092100498 chr19:46371661-46448229 Sample_02_0921 Heart embryonic heart_CS22 498 23 2376 286 10 140 2072 PPP5C,CCDC8,PNMAL2,PNMAL1
SE_02_046601149 chr19:46371727-46426758 Sample_02_0466 Adipose visceral adipocytes 1149 22 1751 180 4 119 2072 PPP5C,CCDC8,PNMAL1
SE_02_092200492 chr19:46371878-46451848 Sample_02_0922 Heart fetal heart_PCW10_12434 492 22 2483 309 13 144 2072 PPP5C,CCDC8,PNMAL2,PNMAL1,HIF3A,AC011484.1
SE_01_009300149 chr19:46371954-46493833 Sample_01_0093 Aorta ascending aorta 149 36 3789 460 15 185 3605 PPP5C,PPP5D1,PNMAL1,CCDC8,PNMAL2
SE_01_007000327 chr19:46372270-46483061 Sample_01_0070 Ascending aorta ascending-aorta 327 16 3497 426 15 169 2934 CCDC8,PPP5C,PNMAL1,PNMAL2
SE_01_011000112 chr19:46372361-46493625 Sample_01_0110 Aorta thoracic aorta_37y 112 50 3771 456 15 175 3538 PPP5C,PPP5D1,PNMAL1,CCDC8,PNMAL2
SE_02_053300917 chr19:46372596-46429324 Sample_02_0533 Blood vessel Circle of Willis_54y 917 11 1793 188 5 140 2072 PPP5C,CCDC8,PNMAL1
SE_01_003700935 chr19:46372675-46427049 Sample_01_0037 Liver hepatocyte 935 7 1735 179 5 119 2072 CCDC8,PPP5C,PNMAL1
SE_02_027500513 chr19:46372680-46429458 Sample_02_0275 Retina FW14 513 9 1794 188 5 140 2072 CCDC8,PPP5C,PNMAL1
SE_02_092300958 chr19:46372692-46426855 Sample_02_0923 Heart fetal heart_PCW10_12522 958 14 1731 176 4 119 2072 PPP5C,CCDC8,PNMAL1
SE_02_092400548 chr19:46372853-46452358 Sample_02_0924 Heart fetal heart_PCW10_12569 548 21 2470 307 13 144 2072 PPP5C,CCDC8,PNMAL2,PNMAL1,HIF3A,AC011484.1
SE_02_044600426 chr19:46372924-46488286 Sample_02_0446 Bone osteosarcoma tumor P2 426 39 3618 444 15 169 2934 PPP5C,PPP5D1,PNMAL1,CCDC8,PNMAL2
SE_02_061300924 chr19:46373010-46416837 Sample_02_0613 Liposarcoma MLPS_T1 924 11 1391 108 3 114 2072 PPP5C,CCDC8
SE_02_063300291 chr19:46373078-46426793 Sample_02_0633 Gastrointestinal Stromal GIST-48B_Imatinib 291 12 1717 176 4 119 2072 PPP5C,CCDC8,PNMAL1
SE_02_148500300 chr19:46373137-46431676 Sample_02_1485 Bone SK-ES-1 300 18 1858 196 6 140 2072 PPP5C,CCDC8,PNMAL1
SE_02_063200422 chr19:46373709-46426767 Sample_02_0632 Gastrointestinal Stromal GIST-48B_DMSO 422 13 1696 173 4 119 2072 PPP5C,CCDC8,PNMAL1
SE_02_119900451 chr19:46377708-46429076 Sample_02_1199 Brain GBM35 451 16 1632 176 5 129 1866 PPP5C,CCDC8,PNMAL1
SE_02_155300359 chr19:46387149-46429219 Sample_02_1553 Gastrointestinal Stromal GIST-2_KIT e11 359 19 1379 160 4 116 1521 PPP5C,CCDC8,PNMAL1
SE_02_077500379 chr19:46389073-46441573 Sample_02_0775 Pancreas EndoC-BH1_SE 379 20 1631 204 7 97 1152 PPP5C,CCDC8,PNMAL1
SE_02_036400031 chr19:46390425-46488724 Sample_02_0364 Skeletal muscle CTR 31 7 3112 413 14 120 1859 CCDC8,PPP5C,PNMAL1,PNMAL2
SE_02_036500039 chr19:46390515-46427158 Sample_02_0365 Skeletal muscle NCI0075 39 5 1212 147 4 66 970 CCDC8,PPP5C,PNMAL1
SE_02_037500075 chr19:46390758-46427038 Sample_02_0375 Skeletal muscle RMS216 75 6 1202 146 4 64 889 CCDC8,PPP5C,PNMAL1
SE_02_036900637 chr19:46391087-46417523 Sample_02_0369 Skeletal muscle RD 637 3 881 78 2 58 810 CCDC8,PPP5C
SE_02_037900637 chr19:46391087-46417523 Sample_02_0379 Skeletal muscle RD-Fusion-Negative-Rhabdomyosarcoma 637 3 881 78 2 58 810 CCDC8,PPP5C
SE_02_105801245 chr19:46391193-46426742 Sample_02_1058 Bone A673_SA2 Rescue 1245 9 1181 141 3 63 798 CCDC8,PPP5C,PNMAL1
SE_02_037300190 chr19:46391267-46417559 Sample_02_0373 Skeletal muscle RMS206 190 5 879 78 2 58 798 CCDC8,PPP5C
SE_02_037200125 chr19:46391268-46417476 Sample_02_0372 Skeletal muscle RMS008 125 6 878 78 2 58 798 CCDC8,PPP5C
SE_00_004300823 chr19:46391549-46440855 Sample_00_0043 Stomach stomach_96d 823 11 1513 197 7 84 798 CCDC8,PNMAL1,PPP5C
SE_02_005600459 chr19:46391559-46427267 Sample_02_0056 Mammary gland HMEC 459 8 1178 144 4 63 798 CCDC8,PNMAL1,PPP5C
SE_02_108000411 chr19:46391568-46417301 Sample_02_1080 Muscle JR1 shCtrl 411 8 856 76 2 58 798 CCDC8,PPP5C
SE_02_156000717 chr19:46391759-46429356 Sample_02_1560 Gastrointestinal Stromal GIST-9_PDGFRA e18 717 8 1225 153 4 84 798 CCDC8,PPP5C,PNMAL1
SE_02_155900538 chr19:46391813-46429241 Sample_02_1559 Gastrointestinal Stromal GIST-8_PDGFRA e18 538 12 1224 153 4 84 798 CCDC8,PPP5C,PNMAL1
SE_02_148000152 chr19:46391867-46448858 Sample_02_1480 Bone MHH-ES-1 152 19 1799 246 9 84 798 CCDC8,PNMAL2,PPP5C,PNMAL1
SE_00_002500388 chr19:46391888-46452980 Sample_00_0025 Muscle of leg muscle-of-leg 388 12 1921 277 12 88 798 CCDC8,PNMAL1,PPP5C,PNMAL2
SE_02_147600308 chr19:46391957-46443769 Sample_02_1476 Bone EW-1 308 17 1615 214 9 84 798 CCDC8,PPP5C,PNMAL1
SE_02_148200382 chr19:46392010-46432888 Sample_02_1482 Bone POE 382 18 1336 171 5 84 798 CCDC8,PPP5C,PNMAL1
SE_02_117800259 chr19:46392015-46452698 Sample_02_1178 Brain GBM07 259 12 1910 275 12 88 798 CCDC8,PNMAL2,PPP5C,PNMAL1
SE_02_096900582 chr19:46392016-46452209 Sample_02_0969 Brain H3.3K27M_PL637 582 10 1897 271 12 88 798 CCDC8,PNMAL2,PPP5C,PNMAL1
SE_02_148300597 chr19:46392018-46431554 Sample_02_1483 Bone RD-ES 597 13 1293 161 5 84 798 CCDC8,PPP5C,PNMAL1
SE_02_117900095 chr19:46392034-46488487 Sample_02_1179 Brain GBM08 95 20 3054 409 14 113 1660 PPP5D1,PNMAL1,CCDC8,PNMAL2,PPP5C
SE_02_074501383 chr19:46392049-46426797 Sample_02_0745 Embryo ES derived cardiac progenitor cells_day7 1383 6 1155 141 3 63 798 CCDC8,PPP5C,PNMAL1
SE_02_155800396 chr19:46392170-46428990 Sample_02_1558 Gastrointestinal Stromal GIST-7_PDGFRA e18 396 6 1205 150 4 84 798 CCDC8,PPP5C,PNMAL1
SE_00_002900330 chr19:46392213-46427234 Sample_00_0029 Ovary ovary 330 12 1159 142 4 63 798 CCDC8,PNMAL1,PPP5C,AC011484.1,HIF3A,PNAL1
SE_02_097000156 chr19:46392234-46488478 Sample_02_0970 Brain H3.3K27M_XHSJ019-X1-1-Rx_xenograft 156 25 3049 408 14 113 1660 PPP5D1,PNMAL1,CCDC8,PNMAL2,PPP5C
SE_02_155400479 chr19:46392254-46429305 Sample_02_1554 Gastrointestinal Stromal GIST-3_KIT e11 479 11 1209 151 4 84 798 CCDC8,PPP5C,PNMAL1
SE_02_156500137 chr19:46392290-46428976 Sample_02_1565 Gastrointestinal Stromal Gastrointestinal stromal tumor 137 9 1202 150 4 83 798 CCDC8,PPP5C,PNMAL1
SE_02_074400935 chr19:46392405-46416918 Sample_02_0744 Embryo ES derived cardiac mesoderm_day5 935 8 817 72 2 58 798 CCDC8,PPP5C
SE_02_155700288 chr19:46392482-46426958 Sample_02_1557 Gastrointestinal Stromal GIST-6_KIT e11/16 288 8 1142 142 4 63 798 CCDC8,PPP5C,PNMAL1
SE_02_063000258 chr19:46392679-46427200 Sample_02_0630 Gastrointestinal Stromal GIST-T1_Imatinib 258 8 1135 140 4 63 798 CCDC8,PPP5C,PNMAL1
SE_02_147300946 chr19:46392743-46443780 Sample_02_1473 Bone A-673 946 11 1583 211 9 84 798 CCDC8,PPP5C,PNMAL1
SE_02_105900936 chr19:46392743-46443795 Sample_02_1059 Bone A673_WT 936 11 1584 211 9 84 798 CCDC8,PPP5C,PNMAL1
SE_02_078100081 chr19:46395091-46495833 Sample_02_0781 Lymphoma Pfeiffer_DMSO 81 23 3122 418 14 155 2803 PPP5D1,PNMAL1,PNMAL2,CCDC8,PPP5C
SE_02_001900843 chr19:46395765-46428930 Sample_02_0019 Embryo Neural crest cells 843 8 1059 144 4 80 798 CCDC8,PNMAL1,PPP5C
SE_02_095700040 chr19:46395851-46488452 Sample_02_0957 Brain 429_Tumor_H3.3K27WT 40 25 2904 403 14 113 1660 PPP5D1,PNMAL1,CCDC8,PNMAL2,PPP5C
SE_02_096200646 chr19:46395878-46454787 Sample_02_0962 Brain H3.3K27M_Tumor-derived cell-line_DIPGXIIIp11_cells 646 12 1822 278 12 88 798 CCDC8,PNMAL2,PPP5C,PNMAL1
SE_02_156200110 chr19:46401785-46429010 Sample_02_1562 Gastrointestinal Stromal GIST-11_SDHC deletion 110 8 869 125 4 84 798 CCDC8,PNMAL1
SE_00_005100762 chr19:46402038-46444080 Sample_00_0051 Adrenal gland adrenal gland 30y 762 15 1277 187 9 84 798 CCDC8,PNMAL1
SE_02_097700319 chr19:46402503-46452445 Sample_02_0977 Brain 2089_H3.3K27WT 319 14 1531 243 12 88 798 CCDC8,PNMAL2,PNMAL1
SE_02_098901400 chr19:46402657-46427304 Sample_02_0989 Kidney kidney cortex_WT 1400 9 791 114 4 63 798 CCDC8,PNMAL1
SE_02_004900375 chr19:46403356-46427035 Sample_02_0049 Embryo endodermal CyT49_GTtoH 375 5 758 109 4 63 798 CCDC8,PNMAL1
SE_02_055300440 chr19:46403505-46427519 Sample_02_0553 Other HSSY2 shCt 440 11 769 110 4 63 798 CCDC8,PNMAL1
SE_00_003601512 chr19:46403524-46427103 Sample_00_0036 Small intestine small-intestine_108days 1512 5 756 109 4 63 798 CCDC8,PNMAL1
SE_02_128000462 chr19:46403531-46449422 Sample_02_1280 Bone Mesenchymal stem cells_SPC_mutation_ EF1 462 11 1404 218 9 84 798 CCDC8,PNMAL2,PNMAL1
SE_02_004800224 chr19:46403606-46426899 Sample_02_0048 Embryo endodermal CyT49_HE 224 6 751 109 4 63 798 CCDC8,PNMAL1
SE_02_004400458 chr19:46403612-46426811 Sample_02_0044 Embryo endodermal CyT49_ES_D5 458 6 748 107 3 63 798 CCDC8,PNMAL1
SE_02_027600325 chr19:46403620-46429675 Sample_02_0276 Retina FW15 325 5 820 120 4 84 798 CCDC8,PNMAL1
SE_02_155600575 chr19:46403772-46429042 Sample_02_1556 Gastrointestinal Stromal GIST-5_KIT e9 575 6 800 115 4 84 798 CCDC8,PNMAL1
SE_02_148600582 chr19:46403798-46431549 Sample_02_1486 Bone SK-N-MC 582 11 881 125 5 84 798 CCDC8,PNMAL1
SE_02_101300603 chr19:46403934-46434988 Sample_02_1013 Brain Lateral temporal lobe_6T_AD 603 9 977 145 6 84 798 CCDC8,PNMAL1
SE_02_055800473 chr19:46404019-46416945 Sample_02_0558 iPSCs FX52 iPSCs mock 473 4 411 35 2 58 798 CCDC8
SE_02_062900528 chr19:46407726-46427260 Sample_02_0629 Gastrointestinal Stromal GIST-T1_DMSO 528 5 620 93 4 63 798 CCDC8,PNMAL1
SE_02_063100471 chr19:46407961-46426890 Sample_02_0631 Gastrointestinal Stromal GIST-T1_JQ1 471 6 606 91 3 63 798 CCDC8,PNMAL1
SE_02_117600088 chr19:46408312-46488423 Sample_02_1176 Brain GBM04 88 20 2490 358 14 113 1660 PPP5D1,PNMAL1,CCDC8,PNMAL2
SE_02_156300200 chr19:46408532-46416394 Sample_02_1563 Gastrointestinal Stromal GIST-12_SDHC deletion 200 3 240 21 2 58 798 CCDC8
Genomic distribution of SEs associated with CCDC8
Genome Browser

The strength of the tissue affected by the gene

Expression of CCDC8

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)