SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000101558
Gene: VAPA Gene type: protein_coding
Strand: + External links:
Genomic region: chr18:9914016-9960021 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_076600732 chr18:9707499-9759571 Sample_02_0766 Ovary PEO1 732 13 1531 152 8 54 188 RAB31,VAPA
SE_02_092900127 chr18:9739640-9851572 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 127 54 3376 122 15 92 317 RAB31,TXNDC2,VAPA
SE_02_122900004 chr18:9756905-9959545 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 4 105 6084 395 24 248 1993 RAB31,TXNDC2,VAPA,PPP4R1
SE_01_010400215 chr18:9762267-9861406 Sample_01_0104 Lung upper lobe of left lung 215 28 3013 106 15 94 594 RAB31,TXNDC2,VAPA
SE_04_000100266 chr18:9790397-9831839 Sample_04_0001 Blood heat shocked K562 266 7 1241 16 0 49 218 RAB31,TXNDC2,VAPA
SE_02_054500320 chr18:9796584-9830182 Sample_02_0545 Bone marrow K562 WT 320 10 1011 9 0 49 76 RAB31,TXNDC2,VAPA
SE_04_000200389 chr18:9796935-9830603 Sample_04_0002 Blood cold shocked K562 389 7 1013 10 0 49 143 RAB31,TXNDC2,VAPA
SE_02_103300670 chr18:9797101-9831831 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 670 8 1047 12 0 49 170 RAB31,TXNDC2,VAPA
SE_02_113000600 chr18:9798278-9829765 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 600 9 961 9 0 48 72 RAB31,TXNDC2,VAPA
SE_02_111600490 chr18:9798587-9829688 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 490 12 951 9 0 43 72 RAB31,TXNDC2,VAPA
SE_02_109900326 chr18:9801443-9850721 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 326 12 1531 58 6 61 211 RAB31,TXNDC2,VAPA
SE_02_098800149 chr18:9802014-9850557 Sample_02_0988 Blood K562_EPZ 149 12 1507 56 6 61 211 RAB31,TXNDC2,VAPA
SE_01_003900227 chr18:9802153-9829819 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 227 7 836 8 0 42 72 RAB31,TXNDC2,VAPA
SE_02_098700329 chr18:9802335-9829801 Sample_02_0987 Blood K562_Control_1 329 8 830 8 0 42 72 RAB31,TXNDC2,VAPA
SE_02_054600154 chr18:9802517-9830526 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 154 9 844 9 0 43 134 RAB31,TXNDC2,VAPA
SE_02_151300724 chr18:9823896-9856310 Sample_02_1513 Lung Transitional AT2->1 cells 724 8 1001 64 7 36 139 RAB31,TXNDC2,VAPA
SE_02_151200632 chr18:9824768-9856156 Sample_02_1512 Lung Purified AT2 cells 632 9 981 64 7 31 139 RAB31,TXNDC2,VAPA
SE_04_000100017 chr18:9848661-9954410 Sample_04_0001 Blood heat shocked K562 17 13 3142 300 12 152 1301 RAB31,TXNDC2,VAPA,PPP4R1
SE_04_000200013 chr18:9866350-9955176 Sample_04_0002 Blood cold shocked K562 13 14 2627 241 9 140 965 VAPA,TXNDC2,PPP4R1
SE_02_109900032 chr18:9866511-9929563 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 32 30 1855 173 6 75 675 VAPA,TXNDC2,PPP4R1
SE_02_054600002 chr18:9866535-9931247 Sample_02_0546 Bone marrow K562_MYO1D Non-hub KO 2 18 1915 177 6 75 675 VAPA,TXNDC2,PPP4R1
SE_02_103300040 chr18:9866598-9931800 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 40 15 1932 178 7 75 685 VAPA,TXNDC2,PPP4R1
SE_02_054500008 chr18:9866611-9931715 Sample_02_0545 Bone marrow K562 WT 8 23 1926 178 7 75 681 VAPA,TXNDC2,PPP4R1
SE_01_003900031 chr18:9866681-9927019 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 31 14 1781 165 6 75 675 VAPA,TXNDC2,PPP4R1
SE_02_111600013 chr18:9866707-9932934 Sample_02_1116 Haematopoietic and lymphoid tissue bone marrow K562_native 13 20 1960 179 7 80 715 VAPA,TXNDC2,PPP4R1
SE_02_098700012 chr18:9866873-9931814 Sample_02_0987 Blood K562_Control_1 12 23 1922 176 7 75 686 VAPA,TXNDC2,PPP4R1
SE_02_113000024 chr18:9868261-9930926 Sample_02_1130 Haematopoietic and lymphoid tissue bone marrow K562_??Np63?? expressing 24 23 1842 166 6 75 675 VAPA,TXNDC2,PPP4R1
SE_02_087500274 chr18:9868429-9929516 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 274 15 1776 162 6 75 675 VAPA,TXNDC2,RAB31
SE_02_098800092 chr18:9868838-9900010 Sample_02_0988 Blood K562_EPZ 92 8 951 108 6 32 479 TXNDC2,VAPA,PPP4R1
SE_02_054700096 chr18:9869072-9879523 Sample_02_0547 Bone marrow K562_MYO1D_Hub_KO 96 4 327 44 1 6 0 TXNDC2,VAPA
SE_02_142300526 chr18:9869265-9879371 Sample_02_1423 Haematopoietic and lymphoid tissue bone marrow K562_Triptolide_1h 526 4 316 41 1 6 0 TXNDC2,VAPA
SE_02_076600611 chr18:9890594-9933875 Sample_02_0766 Ovary PEO1 611 26 1199 88 2 53 236 VAPA,TXNDC2
SE_02_149600184 chr18:9898226-9917553 Sample_02_1496 Other monocyte-derived dendritic cells_R848_24h 184 9 497 35 0 38 196 VAPA,TXNDC2
SE_02_149400189 chr18:9898367-9917917 Sample_02_1494 Other monocyte-derived dendritic cells_0h 189 10 503 34 0 38 196 VAPA,TXNDC2
SE_02_076901170 chr18:9905515-9934267 Sample_02_0769 Ovary HEYA8 1170 11 830 54 1 48 236 VAPA,TXNDC2
SE_02_094700612 chr18:9912771-9916071 Sample_02_0947 Tongue Cal27 612 1 88 6 0 32 196 VAPA,TXNDC2,PPP4R1
SE_01_010400793 chr18:9913109-9918915 Sample_01_0104 Lung upper lobe of left lung 793 3 161 9 0 34 196 VAPA,TXNDC2
SE_02_151200670 chr18:9914979-9929635 Sample_02_1512 Lung Purified AT2 cells 670 3 426 26 0 15 0 VAPA,TXNDC2
SE_02_153300499 chr18:9914979-9934283 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 499 4 577 38 1 20 40 VAPA,TXNDC2
Genomic distribution of SEs associated with VAPA
Genome Browser

The strength of the tissue affected by the gene

Expression of VAPA

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)