SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_113000024
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_Np63_expressing
Genomic region: chr18:9868261-9930926
Size: 62665
Super-enhancer rank 24
Number of SE elements: 23
ChIP density(Case|Control): 118098.459|15039.6
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TXNDC2 ;
ROSE Overlap VAPA ; TXNDC2 ;
ROSE Proximal VAPA ;
ROSE Closest TXNDC2 ;
Lasso VAPA ; PPP4R1 ; TXNDC2 ;
PreSTIGE ;
ABC RAB12 ; GACAT2 ; TWSG1 ; RALBP1 ; PPP4R1 ; PPP4R1-AS1 ; RAB31 ; TXNDC2 ; VAPA ; LINC01254 ; LOC100192426 ; NAPG ; CHMP1B ; NDUFV2 ; ANKRD12 ; NDUFV2-AS1 ;
BETA TXNDC2 ; VAPA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_113000024 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers