SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_111600490
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_native
Genomic region: chr18:9798587-9829688
Size: 31101
Super-enhancer rank 490
Number of SE elements: 12
ChIP density(Case|Control): 50672.8593|6120.6768
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TXNDC2 ;
ROSE Overlap RAB31 ;
ROSE Proximal ;
ROSE Closest TXNDC2 ;
Lasso VAPA ; TXNDC2 ;
PreSTIGE ;
ABC RAB31 ; TXNDC2 ; VAPA ; LOC100192426 ; LINC01254 ; NAPG ; RAB12 ; GACAT2 ; NDUFV2 ; NDUFV2-AS1 ; ANKRD12 ; TWSG1 ; RALBP1 ; PPP4R1 ; PPP4R1-AS1 ;
BETA TXNDC2 ; VAPA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_111600490 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers