SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000196182
Gene: STK40 Gene type: protein_coding
Strand: - External links:
Genomic region: chr1:36339624-36385924 Genome Browser:

Super-enhancer search result of gene-based

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SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_122900357 chr1:36126996-36177322 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 357 11 1302 74 3 400 1572 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,RP11-268J15.5,EVA1B,LSM10,STK40,SH3D21
SE_02_087500549 chr1:36127164-36188329 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 549 21 1639 95 4 450 2407 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,THRAP3,STK40
SE_02_087900631 chr1:36128965-36173731 Sample_02_0879 Ovary SVOG3e cells_Dox_12h_control 631 9 1140 68 3 317 1198 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088300447 chr1:36130818-36173091 Sample_02_0883 Ovary SVOG3e_cells_Dox_12h_transduced with V5-FOXL2 C134W 447 8 1089 67 3 298 1102 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_087800501 chr1:36133046-36172943 Sample_02_0878 Ovary SVOG3e cells_noDox_control 501 7 1050 66 3 287 1102 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088100698 chr1:36133395-36164928 Sample_02_0881 Ovary SVOG3e cells_Dox_12h_transduced_V5-FOXL2_WT 698 5 853 56 3 259 812 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088200432 chr1:36133397-36173746 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 432 8 1065 66 3 302 1198 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_02_088000601 chr1:36133789-36163259 Sample_02_0880 Ovary SVOG3e cells_noDox_transduced_V5-FOXL2_WT 601 5 812 56 3 237 812 TRAPPC3,MAP7D1,ADPRHL2,COL8A2,TEKT2,STK40
SE_01_003900556 chr1:36134715-36163276 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 556 4 789 54 2 228 812 MAP7D1,TRAPPC3,ADPRHL2,COL8A2,EVA1B,LS10,RP11-268J15.5,SH3D21,STK40,THRAP3
SE_02_103300557 chr1:36134931-36162428 Sample_02_1033 Haematopoietic and lymphoid tissue bone marrow K562 557 4 762 51 2 223 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,RP11-268J15.5,EVA1B,LSM10,STK40,SH3D21
SE_04_000200456 chr1:36135000-36163139 Sample_04_0002 Blood cold shocked K562 456 4 780 53 2 226 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,RP11-268J15.5,EVA1B,LSM10,STK40,SH3D21
SE_02_151200160 chr1:36135425-36163340 Sample_02_1512 Lung Purified AT2 cells 160 3 770 52 2 230 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_153300163 chr1:36135707-36163361 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 163 3 768 52 2 230 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_01_010400138 chr1:36136143-36166117 Sample_01_0104 Lung upper lobe of left lung 138 8 816 51 2 246 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_151400306 chr1:36136341-36164739 Sample_02_1514 Lung Differentiated AT1-like cells 306 6 783 50 2 246 812 TRAPPC3,MAP7D1,COL8A2,ADPRHL2,THRAP3,TEKT2,STK40
SE_02_153000657 chr1:36147721-36170818 Sample_02_1530 Peripheral blood neutrophils_0BA0X 657 7 567 32 2 219 450 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_02_152900479 chr1:36148428-36188259 Sample_02_1529 Peripheral blood neutrophils_0BC75 479 7 1093 57 2 377 2042 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_02_092700651 chr1:36148620-36163317 Sample_02_0927 Peripheral blood neutrophils_US 651 3 398 21 1 193 447 TRAPPC3,MAP7D1,COL8A2,THRAP3,STK40
SE_02_094700265 chr1:36149764-36163329 Sample_02_0947 Tongue Cal27 265 3 353 20 1 186 285 MAP7D1,TRAPPC3,COL8A2,ADPRHL2,STK40,OSCP1
SE_02_094600188 chr1:36149791-36173991 Sample_02_0946 Tongue HN12 188 3 607 30 1 245 671 MAP7D1,TRAPPC3,COL8A2,ADPRHL2,STK40,OSCP1
SE_02_151300522 chr1:36149804-36164218 Sample_02_1513 Lung Transitional AT2->1 cells 522 2 368 20 1 199 285 MAP7D1,TRAPPC3,COL8A2,THRAP3,TEKT2,ADPRHL2,STK40
SE_02_122900196 chr1:36220057-36302377 Sample_02_1229 Haematopoietic and lymphoid tissue bone marrow K562_Control 196 58 2211 105 0 214 1001 THRAP3,SH3D21,EVA1B,TRAPPC3,MAP7D1,RP11-268J15.5,STK40
SE_02_153000017 chr1:36333674-36422766 Sample_02_1530 Peripheral blood neutrophils_0BA0X 17 17 2621 257 9 275 2405 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15,THRAP3,CSF3R
SE_02_152900020 chr1:36336655-36422208 Sample_02_1529 Peripheral blood neutrophils_0BC75 20 17 2510 251 9 275 2362 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15,THRAP3,CSF3R
SE_02_092800180 chr1:36337699-36421740 Sample_02_0928 Peripheral blood neutrophils_Ecoli 180 23 2451 247 9 270 2338 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15,THRAP3,CSF3R
SE_02_092700043 chr1:36338318-36421698 Sample_02_0927 Peripheral blood neutrophils_US 43 21 2430 246 9 270 2338 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15,THRAP3,CSF3R
SE_02_153100027 chr1:36338481-36401744 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 27 17 1857 145 8 258 2128 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,MRPS15,CSF3R
SE_02_132000046 chr1:36339191-36402344 Sample_02_1320 Connective Tissue HT1080_EWS-FLI1 46 16 1851 147 8 258 2128 STK40,LSM10,EVA1B,SH3D21,OSCP1,MRPS15
SE_02_132200016 chr1:36342079-36421614 Sample_02_1322 Connective Tissue HT1080_WT 16 11 2305 244 8 239 1773 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15
SE_02_094900258 chr1:36342167-36388243 Sample_02_0949 Umbilical artery HUAEC_WT 258 22 1352 68 4 219 1242 STK40,EVA1B,SH3D21,LSM10,THRAP3,TRAPPC3,MRPS15,OSCP1
SE_02_046600298 chr1:36342259-36401914 Sample_02_0466 Adipose visceral adipocytes 298 30 1736 144 7 227 1516 STK40,LSM10,EVA1B,SH3D21,OSCP1,MRPS15
SE_02_132100036 chr1:36342480-36421515 Sample_02_1321 Connective Tissue HT1080_FUS-DDIT3 36 23 2281 243 8 239 1678 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15
SE_02_060500246 chr1:36342511-36401673 Sample_02_0605 Skin Skin Fibroblast_DMSO 246 10 1720 143 7 227 1465 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,COL8A2,MRPS15
SE_02_144500247 chr1:36342555-36402479 Sample_02_1445 Adipose SW872_TAZ4SA 247 14 1737 146 7 227 1458 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,MRPS15
SE_01_010700235 chr1:36342933-36401485 Sample_01_0107 Esophagus esophagus squamous epithelium 235 14 1699 143 7 226 1369 STK40,LSM10,EVA1B,SH3D21,OSCP1,MRPS15
SE_00_005500045 chr1:36343014-36402043 Sample_00_0055 Spleen spleen 34y 45 24 1712 144 7 225 1349 STK40,LSM10,EVA1B,SH3D21,OSCP1,MAP7D1,MRPS15
SE_02_060600221 chr1:36343062-36401661 Sample_02_0606 Skin Skin Fibroblast_Nutlin3A 221 8 1703 143 7 225 1341 STK40,LSM10,EVA1B,SH3D21,OSCP1,THRAP3,COL8A2,MRPS15
SE_02_087500265 chr1:36343176-36418017 Sample_02_0875 Peripheral blood Peripheral blood-derived mast cells 265 29 2161 231 8 226 1358 STK40,LSM10,OSCP1,EVA1B,SH3D21,MRPS15,MAP7D1
SE_02_062200551 chr1:36364201-36402270 Sample_02_0622 Blood EOL1_Naive 551 22 1050 114 5 131 539 STK40,LSM10,EVA1B,OSCP1,SH3D21,MRPS15
SE_02_046100509 chr1:36364907-36401965 Sample_02_0461 Blood MV-4-11-B cells 509 9 1033 113 5 129 539 STK40,LSM10,EVA1B,OSCP1,MRPS15
SE_02_112900310 chr1:36365208-36401497 Sample_02_1129 Adipose visceral adipose_CTL_HCTR13 310 11 1013 110 5 129 539 STK40,LSM10,EVA1B,OSCP1,SH3D21,MRPS15
SE_02_112800265 chr1:36365929-36401836 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 265 7 1006 111 4 126 539 STK40,LSM10,EVA1B,OSCP1,SH3D21,MRPS15
SE_02_131900120 chr1:36368302-36421282 Sample_02_1319 Connective Tissue HT1080_DDIT3 120 19 1477 204 5 132 672 STK40,LSM10,OSCP1,EVA1B,MRPS15,SH3D21
SE_02_113200500 chr1:36369392-36402163 Sample_02_1132 Pancreas KLM1 wt 500 9 903 103 4 112 462 STK40,LSM10,EVA1B,OSCP1,SH3D21,TRAPPC3,TEKT2,MRPS15
SE_02_144700477 chr1:36371575-36402017 Sample_02_1447 Adipose SW872_CAMTA1 477 3 845 97 3 111 462 STK40,LSM10,EVA1B,OSCP1,THRAP3,SH3D21,MRPS15
SE_02_144800244 chr1:36372720-36401613 Sample_02_1448 Adipose SW872_YAP5SA 244 4 805 95 3 111 462 STK40,LSM10,EVA1B,OSCP1,THRAP3,SH3D21,MRPS15
SE_00_003101216 chr1:36430735-36444162 Sample_00_0031 Placenta placenta 1216 1 334 62 1 29 216 OSCP1,MRPS15,STK40,LSM10,CSF3R,EVA1B,LS10,RP11-268J15.5,SH3D21
SE_02_153000429 chr1:36478296-36492037 Sample_02_1530 Peripheral blood neutrophils_0BA0X 429 1 365 26 1 33 349 CSF3R,OSCP1,MRPS15,STK40
SE_02_152900431 chr1:36478937-36490150 Sample_02_1529 Peripheral blood neutrophils_0BC75 431 1 304 18 1 33 349 CSF3R,OSCP1,MRPS15,STK40
SE_02_153100467 chr1:36479115-36489816 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 467 1 297 18 1 33 349 CSF3R,OSCP1,MRPS15,STK40
SE_02_092700399 chr1:36480048-36489903 Sample_02_0927 Peripheral blood neutrophils_US 399 1 271 15 1 33 278 CSF3R,OSCP1,MRPS15,STK40
SE_02_109900901 chr1:36486701-36518911 Sample_02_1099 Haematopoietic and lymphoid tissue bone marrow K562_DMSO_noIFNG 901 13 890 72 2 45 0 OSCP1,CSF3R,MRPS15,LSM10,STK40
Genomic distribution of SEs associated with STK40
Genome Browser

The strength of the tissue affected by the gene

Expression of STK40

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)