SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID:
Gene: SH5 Gene type:
Strand: External links:
Genomic region: :- Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_01_003900182 chr6:31686072-31704371 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 182 2 386 40 6 104 1636 BAT5,CSNK2B,LY6G6F,LY6G5C,C6ORF47,LY6G6C,APOM,DDAH2,LY6G6E,C6ORF25,GPANK1,BAT3,LY6G5B,MSH5,LY6G6D,CLIC1,ABHD16A,AIF1,APO,ATP6V1G2,BAG6,C2,C6orf25,C6orf47,C6orf48,DDX39B,EHT2,HSPA1B,LS2,EGT1,SH5,SH5-SAPCD1,PRRC2A,VARS,VWA7,SAPCD1
SE_00_003100133 chr6:31794240-31835966 Sample_00_0031 Placenta placenta 133 5 921 102 16 323 2514 HSPA1L,HSPA1B,LSM2,VARS,HSPA1A,C6ORF48,SNORD48,C6ORF26,NEU1,SLC44A4,C6ORF27,SNORD52,C6orf25,C6orf48,DDAH2,LS2,LY6G6C,SH5,SH5-SAPCD1,SAPCD1,VWA7
SE_01_003900298 chr6:31968733-31974176 Sample_01_0039 Haematopoietic and lymphoid tissue bone marrow K562 298 1 141 16 4 77 950 SKIV2L,DOM3Z,STK19,RDBP,C2,CYP21A2,CFB,C4A,TNXB,TNXA,MIR1236,C6orf48,CLIC1,CSNK2B,DDAH2,DDX39B,EHT2,GPANK1,HSPA1A,HSPA1B,HSPA1L,SH5,SH5-SAPCD1,NEU1,PPT2,PRRC2A,PRRT1,VARS,VWA7,ZBTB12,DO3Z,SLC44A4
Genomic distribution of SEs associated with SH5
Genome Browser

The strength of the tissue affected by the gene

Expression of SH5

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)