SEdb 2.0
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Gene overview

Strategies/Algorithm: lasso Ensembl ID: ENSG00000006712
Gene: PAF1 Gene type: protein_coding
Strand: - External links:
Genomic region: chr19:39385629-39391154 Genome Browser:

Super-enhancer search result of gene-based

GREAT Download bed
SE ID SE Region Sample ID Tissue type Biosample name SE rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_00_001600248 chr19:39389546-39391888 Sample_00_0016 Foreskin iPS-DF-19.11 253 1 67 4 0 32 416 PAF1,MED29,SAMD4B,PLEKHG2,RPS16,ZFP36,AC011500.1,DLL3,IFNL1,IFNL2,IFNL3,LRFN1,ED29,SELV
SE_02_152900084 chr19:39394680-39413666 Sample_02_1529 Peripheral blood neutrophils_0BC75 84 1 477 34 0 233 1597 PLEKHG2,ZFP36,MIR4530,MED29,SUPT5H,RPS16,PAF1,GMFG,LRFN1
SE_02_153000110 chr19:39395893-39413264 Sample_02_1530 Peripheral blood neutrophils_0BA0X 110 1 426 26 0 214 1461 PLEKHG2,ZFP36,MIR4530,MED29,SUPT5H,RPS16,PAF1,GMFG,LRFN1
SE_02_092700071 chr19:39396056-39412965 Sample_02_0927 Peripheral blood neutrophils_US 71 2 421 25 0 212 1386 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,LRFN1
SE_02_153100109 chr19:39397008-39413158 Sample_02_1531 Peripheral blood neutrophils_0B9ZK 109 1 397 24 0 214 1437 PLEKHG2,ZFP36,MIR4530,MED29,SUPT5H,RPS16,PAF1,GMFG,LRFN1
SE_02_047700082 chr19:39397119-39412357 Sample_02_0477 Colon intestinal epithelial organoids_139a 82 3 378 21 0 199 1367 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,TIMM50,LGALS16,GMFG,PAK4,SAMD4B,LRFN1,EID2B,IFNL1,SELV
SE_02_112800113 chr19:39397206-39412077 Sample_02_1128 Adipose visceral adipose_CTL_HCTR10 113 9 359 21 0 196 1329 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,SAMD4B,LRFN1,EID2B,EID2
SE_00_004900007 chr19:39397442-39411931 Sample_00_0049 Small intestine small intestine 30y 7 5 347 21 0 196 1264 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,PAK4,SAMD4B
SE_02_112600065 chr19:39397459-39411681 Sample_02_1126 Adipose visceral adipose_CTL_H425 65 4 341 20 0 196 1261 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,SAMD4B,LRFN1,EID2B,EID2
SE_02_158200149 chr19:39397554-39411877 Sample_02_1582 Renal OS-RC-2 149 6 346 21 0 193 1250 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,SAMD4B
SE_02_151200402 chr19:39397855-39406698 Sample_02_1512 Lung Purified AT2 cells 402 4 205 15 0 80 502 MED29,ZFP36,PLEKHG2,SUPT5H,RPS16,PAF1,MIR4530,TIMM50,GMFG,SAMD4B,LRFN1
SE_02_088201188 chr19:39397865-39410764 Sample_02_0882 Ovary SVOG3e_cells_noDox_transduced with V5-FOXL2 C134W 1188 3 309 16 0 185 1174 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,TIMM50,ZNF780A,IFNL4,GMFG,DYRK1B,SAMD4B,LRFN1,EID2B,EID2,SELV,DLL3
SE_01_011700121 chr19:39397873-39411769 Sample_01_0117 Lung fibroblast of lung 121 3 335 18 0 188 1172 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,TIMM50,GMFG,SAMD4B,LRFN1
SE_02_153300232 chr19:39397877-39411769 Sample_02_1533 Lung purified primary alveolar epithelial type 2 cells 232 4 335 18 0 188 1171 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,TIMM50,GMFG,SAMD4B,LRFN1
SE_02_046500359 chr19:39397898-39411947 Sample_02_0465 Adipose subcutaneous adipocytes 359 5 339 18 0 188 1161 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,SAMD4B,LRFN1,EID2B,EID2
SE_02_112700141 chr19:39397932-39404392 Sample_02_1127 Adipose visceral adipose_CTL_H465 141 3 163 12 0 75 476 MED29,ZFP36,PLEKHG2,SUPT5H,RPS16,PAF1,MIR4530,GMFG,SAMD4B,LRFN1,EID2B,EID2
SE_02_111500906 chr19:39397956-39404904 Sample_02_1115 Liver HepG2 906 2 171 13 0 75 471 MED29,ZFP36,PLEKHG2,SUPT5H,RPS16,PAF1,MIR4530,TIMM50,GMFG,PAK4,SAMD4B,EID2
SE_01_010400040 chr19:39400683-39414705 Sample_01_0104 Lung upper lobe of left lung 40 1 336 16 0 227 1161 PLEKHG2,ZFP36,MIR4530,SUPT5H,RPS16,PAF1,MED29,TIMM50,GMFG,SAMD4B,LRFN1
SE_02_092800094 chr19:39400694-39413785 Sample_02_0928 Peripheral blood neutrophils_Ecoli 94 1 306 15 0 218 1019 PLEKHG2,ZFP36,MIR4530,SUPT5H,RPS16,PAF1,MED29,GMFG,LRFN1
SE_02_092900421 chr19:39428260-39448849 Sample_02_0929 Mid-gestation placenta trophoblast__CytT 421 11 682 66 1 61 532 RPS16,SUPT5H,PLEKHG2,TIMM50,ZFP36,MED29,PAF1,MIR4530,LGALS13,EID2,SAMD4B,IFNL1,AC011500.1
Genomic distribution of SEs associated with PAF1
Genome Browser

The strength of the tissue affected by the gene

Expression of PAF1

Cell line (ENCODE) Primary cell (ENCODE)Tissue (NCBI) Normal tissue (GTEx) Cell line (CCLE)