Sample overview


Search result

SE ID SE Region Size Rank Element Common SNP eQTL Risk SNP TFBS CRISPR Cas9 Gene
SE_02_112600035 chr1:12432210-12481426 49216 35 28 1240 13 1 302 134 VPS13D,SNORA59A
SE_02_112600037 chr1:12587900-12622327 34427 37 19 963 29 3 153 483 DHRS3,AADACL4,MIR6730
SE_02_112600029 chr1:145977764-146009964 32200 29 28 164 73 1 167 722 TXNIP,POLR3GL,LOC101928979,LIX1L,RNVU1-6,HFE2,ANKRD34A,PEX11B,ITGA10,RBM8A
SE_02_112600075 chr1:154999710-155018025 18315 75 15 380 20 2 596 1506 ZBTB7B,CKS1B,PBXIP1,SHC1,DCST2,PYGO2,LENEP,ADAM15,EFNA4,LOC100505666,MIR4258,FLAD1,DCST1,TRIM46,SLC50A1,PMVK,DPM3
SE_02_112600080 chr1:155966598-155989389 22791 80 13 492 21 1 167 973 ARHGEF2,RXFP4,SCARNA4,SSR2,MIR6738,KIAA0907,SNORA80E
SE_02_112600088 chr1:157995516-158025324 29808 88 16 760 19 5 138 0 KIRREL
SE_02_112600068 chr1:201480181-201512453 32272 68 10 927 107 5 126 1516 CSRP1,RPS10P7,PHLDA3,NAV1
SE_02_112600023 chr1:21891045-21934464 43419 23 38 1273 85 2 172 151 HSPG2,CELA3B,USP48
SE_02_112600042 chr1:2189361-2215025 25664 42 9 815 43 0 86 1823 FAAP20,SKI,C1orf86,RER1
SE_02_112600024 chr1:2270583-2331467 60884 24 24 2350 139 8 201 1657 SKI,MORN1,LOC100129534
SE_02_112600078 chr1:234599439-234613433 13994 78 11 391 22 2 0 780 IRF2BP2,LOC101927787,LINC00184,TARBP1
SE_02_112600090 chr1:234969984-234998534 28550 90 14 867 37 2 94 0 LOC101927851,TOMM20
SE_02_112600091 chr1:27402196-27434861 32665 91 15 790 57 1 236 1337 WASF2,FCN3,CD164L2,MAP3K6,GPR3
SE_02_112600007 chr1:27525927-27599540 73613 7 45 1827 81 3 1147 1816 AHDC1,FGR,WASF2
SE_02_112600087 chr1:54271508-54298660 27152 87 10 801 19 5 120 101 SSBP3,SSBP3-AS1
SE_02_112600014 chr10:102599435-102651294 51859 14 29 1200 124 22 468 1661 SUFU,TRIM8
SE_02_112600032 chr10:124696630-124740902 44272 32 18 1296 88 6 171 464 FAM53B-AS1,FAM53B
SE_02_112600049 chr10:44964023-44998131 34108 49 16 1057 93 2 98 2249 C10ORF25,RASSF4,C10ORF10,ZNF22,TMEM72-AS1,TMEM72,C10orf10
SE_02_112600079 chr10:71746087-71771357 25270 79 23 786 66 4 100 1462 CDH23,C10ORF54,C10ORF105,MIR7152
SE_02_112600045 chr10:72243356-72276839 33483 45 18 924 94 1 189 475 DDIT4,ASCC1,ANAPC16,DNAJB12
SE_02_112600061 chr10:72297188-72337166 39978 61 14 1129 78 0 111 807 DNAJB12,DDIT4,ASCC1,ANAPC16
SE_02_112600052 chr10:79070937-79115348 44411 52 16 1322 54 20 226 0 ZMIZ1,ZMIZ1-AS1
SE_02_112600018 chr10:79380548-79438170 57622 18 24 1729 90 7 181 1175 ZCCHC24,PPIF
SE_02_112600004 chr11:114137970-114199018 61048 4 47 1803 44 13 476 439 ZBTB16,RBM7,HTR3B
SE_02_112600074 chr11:117193091-117223484 30393 74 12 905 128 14 164 2762 TAGLN,LOC100652768,PCSK7,SIDT2,RNF214,PAFAH1B2
SE_02_112600056 chr11:118912112-118929234 17122 56 14 395 31 2 269 0 MIR4492,CXCR5,BCL9L,UPK2,FOXR1
SE_02_112600028 chr11:309957-336850 26893 28 10 869 122 2 9 944 IFITM3,IFITM1,ATHL1,B4GALNT4,IFITM5,NLRP6,IFITM2
SE_02_112600051 chr11:62538999-62561124 22125 51 17 517 39 2 227 354 AHNAK,MIR3654,EEF1G,TUT1,MTA2,MIR6747,ASRGL1,UBXN1,B3GAT3,INTS5,GANAB
SE_02_112600086 chr11:64850956-64875881 24925 86 16 793 61 0 109 953 EHD1,ATG2A,MEN1,MIR192,MAP4K2,PPP2R5B,MIR6749,CDC42BPG,MIR6750,MIR194-2
SE_02_112600057 chr11:65416305-65428519 12214 57 8 368 12 2 42 880 NEAT1,SLC25A45,FRMD8,MIR612,EHBP1L1,LTBP3,MAP3K11,POLA2,TM7SF2,SIPA1,SCYL1,PCNXL3,FAM89B
SE_02_112600013 chr11:65470554-65508309 37755 13 17 1096 115 4 50 963 MALAT1,SCYL1,LTBP3,NEAT1,MIR612,SLC25A45,EHBP1L1,RELA,MAP3K11,SSSCA1,SIPA1,CDC42EP2,PCNXL3,TIGD3,FAM89B
SE_02_112600027 chr12:120224817-120264144 39327 27 23 989 62 0 124 251 PXN,SIRT4,RNU4-1,GCN1,PXN-AS1,RPLP0,RNU4-2
SE_02_112600059 chr12:121796460-121812149 15689 59 6 421 24 0 220 1773 SETD1B,LINC01089,RHOF,HPD
SE_02_112600020 chr12:124359280-124423991 64711 20 19 2394 57 7 169 1392 NCOR2,MIR6880
SE_02_112600009 chr12:47775366-47829867 54501 9 41 1565 152 4 437 3503 SLC48A1,HDAC7,RAPGEF3,ENDOU
SE_02_112600044 chr12:6322920-6348109 25189 44 15 739 57 15 133 1766 PLEKHG6,SCNN1A,TNFRSF1A,LTBR
SE_02_112600064 chr14:103696600-103742168 45568 64 13 1633 95 1 120 3515 KLC1,ZFYVE21,PPP1R13B,XRCC3
SE_02_112600050 chr14:77023264-77045615 22351 50 11 602 37 7 454 971 IRF2BPL,LOC283575,LOC102724190,GSTZ1
SE_02_112600085 chr15:75646801-75674077 27276 85 11 714 52 3 185 1047 SNX33,CSPG4,IMP3,ODF3L1,SNUPN
SE_02_112600025 chr15:78012075-78076494 64419 25 24 1684 194 3 125 707 TBC1D2B,SH2D7,LOC91450
SE_02_112600083 chr16:2023937-2044541 20604 83 15 713 41 2 113 1649 NTHL1,SLC9A3R2,GFER,SYNGR3,TSC2,MIR1225,NOXO1,ZNF598,NPW
SE_02_112600076 chr16:75234214-75263757 29543 76 11 1102 102 8 146 1681 BCAR1,CTRB2,CTRB1,LOC100506281
SE_02_112600043 chr17:2058225-2091687 33462 43 24 958 79 3 547 1792 HIC1,SMG6,DPH1,RTN4RL1,MIR132,MIR212,OVCA2,CRK,SRR
SE_02_112600054 chr17:38873121-38912734 39613 54 19 1109 113 5 94 528 LASP1,SNORA21,CWC25,RPL23,MIR6779,MIR4727,C17ORF98,LINC00672
SE_02_112600070 chr17:40089670-40113773 24103 70 16 594 42 1 466 1254 THRA,NR1D1,MSL1,MIR6866,MED24,CASC3,RARA,PSMD3,RAPGEFL1,ORMDL3
SE_02_112600017 chr17:40311132-40356523 45391 17 24 1041 60 0 604 1777 RARA-AS1,RARA,CDC6,GJD3
SE_02_112600081 chr17:42512055-42532240 20185 81 9 540 35 0 39 699 ATP6V0A1,MIR5010,MLX,MIR548AT,PSMC3IP,COASY,NAGLU,HSD17B1
SE_02_112600089 chr17:42653405-42680442 27037 89 7 672 64 1 360 3065 PLEKHH3,CCR10,TUBG2,FAM134C,CNTNAP1,MIR6780A,TUBG1
SE_02_112600002 chr17:43231413-43301332 69919 2 33 0 0 0 0 0 RNU2-1,TMEM106A,LINC00854
SE_02_112600053 chr17:50178041-50221102 43061 53 13 1345 71 3 372 3755 LOC101927230,COL1A1,SGCA,SAMD14,HILS1,PPP1R9B
SE_02_112600047 chr17:81386631-81404638 18007 47 10 594 47 1 303 274 BAHCC1,MIR4740,LOC100130370,MIR3186
SE_02_112600062 chr17:8147852-8164981 17129 62 6 522 43 0 350 1692 PER1,VAMP2,MIR4521,HES7,AURKB,ALOXE3,BORCS6,SNORD118,MIR6883,TMEM107,RANGRF,PFAS,C17orf59
SE_02_112600041 chr19:1244468-1267178 22710 41 14 864 22 1 254 1847 ATP5D,MIDN,C19ORF24,CIRBP,CIRBP-AS1,STK11,CBARP,EFNA2,GAMT,RPS15,GPX4,SBNO2,POLR2E,APC2,C19orf24,NDUFS7,MUM1,C19orf26
SE_02_112600038 chr19:12777981-12796228 18247 38 7 416 34 1 303 517 JUNB,MIR5684,BEST2,RTBDN,ASNA1,HOOK2,RNASEH2A,PRDX2,C19ORF43,MAST1,GCDH,TNPO2,DHPS,RAD23A,DNASE2,CALR,FARSA,WDR83OS,C19orf43,FBXW9,WDR83,GADD45GIP1,ZNF564
SE_02_112600046 chr19:12997649-13038218 40569 46 14 1005 41 0 521 331 NFIX,DAND5,GADD45GIP1
SE_02_112600012 chr19:13052565-13105173 52608 12 27 1256 56 3 585 2867 NFIX,LYL1,TRMT1,IER2,STX10,NACC1
SE_02_112600072 chr19:16256007-16294090 38083 72 12 1159 64 3 60 0 KLF2,FAM32A
SE_02_112600030 chr19:18284775-18329026 44251 30 17 1325 108 7 41 786 LSM4,PDE4C,JUND,PGPEP1,LOC729966,MIR3188,KIAA1683,ISYNA1,SSBP4
SE_02_112600026 chr19:2031817-2064918 33101 26 18 1170 54 2 115 2093 MKNK2,IZUMO4,MOB3A,BTBD2,CSNK1G2,AP3D1,SF3A2,SCAMP4,ADAT3,JSRP1
SE_02_112600015 chr19:3361637-3411793 50156 15 22 1624 69 2 75 355 NFIC,CACTIN,DOHH,GNA11,FZR1
SE_02_112600006 chr19:38649510-38735034 85524 6 44 2599 319 8 433 2723 CAPN12,ACTN4,EIF3K,MAP4K1,LGALS7
SE_02_112600065 chr19:39397459-39411681 14222 65 4 341 20 0 196 1261 ZFP36,MIR4530,MED29,PLEKHG2,SUPT5H,RPS16,PAF1,GMFG,SAMD4B,LRFN1,EID2B,EID2
SE_02_112600077 chr2:201115895-201137231 21336 77 7 482 43 2 39 690 CFLAR,CASP10,FAM126B,CFLAR-AS1,NDUFB3,ORC2,TRAK2,CASP8
SE_02_112600011 chr2:217898583-217955367 56784 11 34 1689 24 2 219 699 TNS1,MIR6809
SE_02_112600034 chr2:43210981-43251759 40778 34 12 1177 57 0 230 1414 THADA,ZFP36L2,LINC01126
SE_02_112600021 chr2:47033259-47087248 53989 21 31 1995 82 13 153 1237 TTC7A,C2ORF61
SE_02_112600066 chr20:50274010-50312401 38391 66 18 1161 123 20 185 704 LINC01272,LINC01271,LINC01270,CEBPB,UBE2V1
SE_02_112600060 chr22:30289932-30318848 28916 60 13 687 59 1 173 956 TBC1D10A,SF3A1,LIF,OSM,GATSL3,CCDC157
SE_02_112600008 chr22:36320075-36388040 67965 8 31 2031 110 7 248 1322 MYH9,MIR6819,APOL1,APOL2
SE_02_112600005 chr3:129554507-129627874 73367 5 43 2249 240 9 422 4061 PLXND1,H1FOO,RHO
SE_02_112600063 chr3:134357290-134381807 24517 63 14 676 29 5 182 1509 AMOTL2,MIR6827
SE_02_112600069 chr3:141393467-141426842 33375 69 14 827 30 13 66 275 ZBTB38,RASA2
SE_02_112600058 chr4:87024940-87057397 32457 58 21 895 88 8 66 259 AFF1
SE_02_112600010 chr5:132412643-132505966 93323 10 26 2356 346 47 321 1757 C5ORF56,IRF1,IL5,SLC22A5,LOC553103,MIR3936
SE_02_112600039 chr5:150130357-150163643 33286 39 19 1001 77 1 185 1000 PDGFRB,CDX1,SLC6A7,CSF1R
SE_02_112600036 chr5:151663591-151699727 36136 36 22 990 91 4 116 1334 CTB-113P19.1,SPARC
SE_02_112600033 chr5:172765049-172801470 36421 33 18 1149 64 2 199 574 DUSP1,LOC101928093,ERGIC1,ATP6V0E1,RPL26L1,CREBRF
SE_02_112600073 chr6:112202804-112245332 42528 73 11 1116 88 5 131 134 LAMA4,LOC101927640
SE_02_112600084 chr6:35718933-35733377 14444 84 9 372 27 1 137 732 LOC285847,FKBP5,CLPSL2,ARMC12,CLPSL1
SE_02_112600055 chr7:5418416-5430754 12338 55 10 370 3 0 255 846 TNRC18
SE_02_112600071 chr7:76291217-76318768 27551 71 13 967 118 2 65 904 HSPB1,YWHAG,DTX2,ZP3
SE_02_112600019 chr8:22548929-22597499 48570 19 12 1595 128 1 311 4477 SORBS3,PDLIM2,C8ORF58,BIN3-IT1,CCAR2
SE_02_112600048 chr8:30537024-30574739 37715 48 19 1142 60 3 92 806 RBPMS,SMIM18,GTF2E2
SE_02_112600016 chr9:121271660-121306260 34600 16 15 927 101 0 146 932 GSN-AS1,GSN
SE_02_112600022 chr9:127509754-127573907 64153 22 24 1884 208 6 197 1000 FAM129B,STXBP1
SE_02_112600040 chr9:127825894-127862359 36465 40 15 1033 75 3 0 872 ENG,ST6GALNAC6,SH2D3C,CDK9,MIR4672,MIR3960,FPGS,MIR2861,AK1
SE_02_112600031 chr9:129479100-129500952 21852 31 17 607 34 0 85 419 LINC00963
SE_02_112600082 chr9:70406597-70422627 16030 82 15 372 17 0 288 385 KLF9,SMC5
SE_02_112600001 chrM:4-16565 16561 1 3 0 0 0 151 1811
SE_02_112600003 chrX:115843588-115889117 45529 3 35 28 0 0 0 0 DANT2,PLS3
SE_02_112600067 chrX:56764168-56783616 19448 67 6 200 13 0 0 0 LINC01420,UQCRBP1

SE annotation visualization


Information description of sample and annotation

Case ID: Name:GSM4663969
Input ID: Name:GSM4663990
Common SNP: dbSNP
eQTL: GTEx, HaploReg v4.1, PancanQTL
Risk SNP : GWAS Catalog, GWASdb v2.0
TFBS: TFBS Conserved of UCSC
CRISPR/Cas9 target site: CRISPR Targets of UCSC

Software and parameters used

Read Mapping: bowtie(v2.4.4) -p 10 -x -S -U
Peak Calling: macs2 callpeak -t -c -f BAM -B -g hs(mm) -q 0.01 --keep-dup=auto
Stitching Distance: 12.5 kb
TSS Exclusive Zone: +/- 2 kb